Result of FASTA (ccds) for pF1KB8467
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8467, 449 aa
  1>>>pF1KB8467 449 - 449 aa - 449 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9757+/-0.00101; mu= 19.1444+/- 0.060
 mean_var=61.5016+/-12.026, 0's: 0 Z-trim(103.7): 38  B-trim: 4 in 1/49
 Lambda= 0.163543
 statistics sampled from 7479 (7515) to 7479 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.614), E-opt: 0.2 (0.231), width:  16
 Scan time:  2.760

The best scores are:                                      opt bits E(32554)
CCDS13751.1 TUBA8 gene_id:51807|Hs108|chr22        ( 449) 3014 720.0 1.2e-207
CCDS8782.1 TUBA1C gene_id:84790|Hs108|chr12        ( 449) 2783 665.5  3e-191
CCDS2438.1 TUBA4A gene_id:7277|Hs108|chr2          ( 448) 2782 665.3 3.5e-191
CCDS33290.1 TUBA3D gene_id:113457|Hs108|chr2       ( 450) 2781 665.0 4.2e-191
CCDS9284.1 TUBA3C gene_id:7278|Hs108|chr13         ( 450) 2781 665.0 4.2e-191
CCDS76556.1 TUBA1C gene_id:84790|Hs108|chr12       ( 519) 2776 663.9 1.1e-190
CCDS31792.1 TUBA1B gene_id:10376|Hs108|chr12       ( 451) 2774 663.4 1.3e-190
CCDS58227.1 TUBA1A gene_id:7846|Hs108|chr12        ( 451) 2772 662.9 1.8e-190
CCDS8781.1 TUBA1A gene_id:7846|Hs108|chr12         ( 451) 2772 662.9 1.8e-190
CCDS2158.1 TUBA3E gene_id:112714|Hs108|chr2        ( 450) 2727 652.3 2.9e-187
CCDS63131.1 TUBA4A gene_id:7277|Hs108|chr2         ( 433) 2679 641.0 7.1e-184
CCDS54495.1 TUBA8 gene_id:51807|Hs108|chr22        ( 383) 2553 611.2 5.7e-175
CCDS58226.1 TUBA1A gene_id:7846|Hs108|chr12        ( 416) 2541 608.4 4.4e-174
CCDS7066.2 TUBAL3 gene_id:79861|Hs108|chr10        ( 446) 2305 552.7 2.7e-157
CCDS53491.1 TUBAL3 gene_id:79861|Hs108|chr10       ( 406) 2095 503.2  2e-142
CCDS4687.1 TUBB gene_id:203068|Hs108|chr6          ( 444) 1262 306.6 3.2e-83
CCDS7039.1 TUBB4B gene_id:10383|Hs108|chr9         ( 445) 1251 304.0 1.9e-82
CCDS4484.1 TUBB2A gene_id:7280|Hs108|chr6          ( 445) 1240 301.4 1.2e-81
CCDS10988.1 TUBB3 gene_id:10381|Hs108|chr16        ( 450) 1239 301.2 1.4e-81
CCDS12168.1 TUBB4A gene_id:10382|Hs108|chr19       ( 444) 1238 301.0 1.6e-81
CCDS4485.1 TUBB2B gene_id:347733|Hs108|chr6        ( 445) 1238 301.0 1.6e-81
CCDS11858.1 TUBB6 gene_id:84617|Hs108|chr18        ( 446) 1235 300.3 2.7e-81
CCDS7051.1 TUBB8 gene_id:347688|Hs108|chr10        ( 444) 1220 296.7 3.1e-80
CCDS13475.1 TUBB1 gene_id:81027|Hs108|chr20        ( 451) 1186 288.7 8.1e-78
CCDS78124.1 TUBB gene_id:203068|Hs108|chr6         ( 372) 1058 258.5 8.5e-69
CCDS56012.1 TUBB3 gene_id:10381|Hs108|chr16        ( 378) 1053 257.3   2e-68
CCDS11433.1 TUBG1 gene_id:7283|Hs108|chr17         ( 451)  799 197.4 2.5e-50
CCDS32658.1 TUBG2 gene_id:27175|Hs108|chr17        ( 451)  792 195.7 7.8e-50
CCDS5100.1 TUBE1 gene_id:51175|Hs108|chr6          ( 475)  456 116.5   6e-26
CCDS54154.1 TUBD1 gene_id:51174|Hs108|chr17        ( 396)  400 103.2 4.9e-22
CCDS11620.1 TUBD1 gene_id:51174|Hs108|chr17        ( 453)  400 103.3 5.4e-22
CCDS54153.1 TUBD1 gene_id:51174|Hs108|chr17        ( 398)  387 100.2 4.1e-21
CCDS54152.1 TUBD1 gene_id:51174|Hs108|chr17        ( 351)  379 98.2 1.4e-20
CCDS77153.1 TUBB6 gene_id:84617|Hs108|chr18        ( 104)  245 66.3 1.7e-11


>>CCDS13751.1 TUBA8 gene_id:51807|Hs108|chr22             (449 aa)
 initn: 3014 init1: 3014 opt: 3014  Z-score: 3841.5  bits: 720.0 E(32554): 1.2e-207
Smith-Waterman score: 3014; 100.0% identity (100.0% similar) in 449 aa overlap (1-449:1-449)

               10        20        30        40        50        60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440         
pF1KB8 AREDLAALEKDYEEVGTDSFEEENEGEEF
       :::::::::::::::::::::::::::::
CCDS13 AREDLAALEKDYEEVGTDSFEEENEGEEF
              430       440         

>>CCDS8782.1 TUBA1C gene_id:84790|Hs108|chr12             (449 aa)
 initn: 2783 init1: 2783 opt: 2783  Z-score: 3547.0  bits: 665.5 E(32554): 3e-191
Smith-Waterman score: 2783; 89.8% identity (97.1% similar) in 449 aa overlap (1-449:1-449)

               10        20        30        40        50        60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
       ::::::.::::::::::::::::.::::::: :: . .. .  . ::::.::::::: ::
CCDS87 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
       ::::::..::::::.::::.:::::::::::::::::::::::::::::.::: ::::::
CCDS87 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
       :::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
CCDS87 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
       :::::::::::::::::::::::::::::.::::.:::::::::::.:::::..:::: .
CCDS87 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
       ::::::::::::::::.::::::::::::.:::.::::::::::::::::::::::::::
CCDS87 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       :::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS87 TVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440         
pF1KB8 AREDLAALEKDYEEVGTDSFEEENEGEEF
       ::::.:::::::::::.:: . :.::::.
CCDS87 AREDMAALEKDYEEVGADSADGEDEGEEY
              430       440         

>>CCDS2438.1 TUBA4A gene_id:7277|Hs108|chr2               (448 aa)
 initn: 2782 init1: 2782 opt: 2782  Z-score: 3545.7  bits: 665.3 E(32554): 3.5e-191
Smith-Waterman score: 2782; 90.0% identity (96.4% similar) in 448 aa overlap (1-448:1-448)

               10        20        30        40        50        60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
       :::::::::::::::.:::::::.::::::: :: . .. .  . :::::::: ::: ::
CCDS24 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
       ::::::..::::::.::.: : :::::::::::::::::::::::::::.::: :: :::
CCDS24 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
       :::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
CCDS24 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
       :::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
CCDS24 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
       ::::::::::::::::.::::::::::::.:::::::::.::::::::::::::::::::
CCDS24 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440         
pF1KB8 AREDLAALEKDYEEVGTDSFEEENEGEEF
       ::::.::::::::::: ::.:.:.:::: 
CCDS24 AREDMAALEKDYEEVGIDSYEDEDEGEE 
              430       440         

>>CCDS33290.1 TUBA3D gene_id:113457|Hs108|chr2            (450 aa)
 initn: 2768 init1: 2768 opt: 2781  Z-score: 3544.4  bits: 665.0 E(32554): 4.2e-191
Smith-Waterman score: 2781; 90.7% identity (96.9% similar) in 450 aa overlap (1-449:1-450)

               10        20        30        40        50        60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
       ::::::.::::::::::::::::.::::::: :: . .. .  . ::::.::::::: ::
CCDS33 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
       ::::::..:::::::::::.:::::::::::::::::::::::::::::.::: .:::::
CCDS33 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
       :::::.: :.:::::::::::::::::::.::::::::.:::::::::::::::::::::
CCDS33 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS33 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
       :::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
CCDS33 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
       :::::::::::::::::::::::::::::.:::.::::::::::::::::::::::::::
CCDS33 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440          
pF1KB8 AREDLAALEKDYEEVGTDSFEEE-NEGEEF
       ::::::::::::::::.:: : : .::::.
CCDS33 AREDLAALEKDYEEVGVDSVEAEAEEGEEY
              430       440       450

>>CCDS9284.1 TUBA3C gene_id:7278|Hs108|chr13              (450 aa)
 initn: 2768 init1: 2768 opt: 2781  Z-score: 3544.4  bits: 665.0 E(32554): 4.2e-191
Smith-Waterman score: 2781; 90.7% identity (96.9% similar) in 450 aa overlap (1-449:1-450)

               10        20        30        40        50        60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
       ::::::.::::::::::::::::.::::::: :: . .. .  . ::::.::::::: ::
CCDS92 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
       ::::::..:::::::::::.:::::::::::::::::::::::::::::.::: .:::::
CCDS92 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
       :::::.: :.:::::::::::::::::::.::::::::.:::::::::::::::::::::
CCDS92 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS92 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
       :::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
CCDS92 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
       :::::::::::::::::::::::::::::.:::.::::::::::::::::::::::::::
CCDS92 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440          
pF1KB8 AREDLAALEKDYEEVGTDSFEEE-NEGEEF
       ::::::::::::::::.:: : : .::::.
CCDS92 AREDLAALEKDYEEVGVDSVEAEAEEGEEY
              430       440       450

>>CCDS76556.1 TUBA1C gene_id:84790|Hs108|chr12            (519 aa)
 initn: 2776 init1: 2776 opt: 2776  Z-score: 3537.1  bits: 663.9 E(32554): 1.1e-190
Smith-Waterman score: 2776; 89.7% identity (97.1% similar) in 448 aa overlap (2-449:72-519)

                                            10        20        30 
pF1KB8                              MRECISVHVGQAGVQIGNACWELFCLEHGIQ
                                     :::::.::::::::::::::::.:::::::
CCDS76 IYFTRTLQLPAPFNTCTSSKSRGEPGCDSKRECISIHVGQAGVQIGNACWELYCLEHGIQ
              50        60        70        80        90       100 

              40        50        60        70        80        90 
pF1KB8 ADGTFDAQASKINDDDSFTTFFSETGNGKHVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQ
        :: . .. .  . ::::.::::::: ::::::::..::::::.::::.:::::::::::
CCDS76 PDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQ
             110       120       130       140       150       160 

             100       110       120       130       140       150 
pF1KB8 LITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTS
       ::::::::::::::::::.::: :::::::::::.: :.::::::.::::::::::::::
CCDS76 LITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTS
             170       180       190       200       210       220 

             160       170       180       190       200       210 
pF1KB8 LLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD
       :::::::.::::::::::.:::::::::::::::::::::::::::::::::::::::::
CCDS76 LLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD
             230       240       250       260       270       280 

             220       230       240       250       260       270 
pF1KB8 ICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS76 ICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLAT
             290       300       310       320       330       340 

             280       290       300       310       320       330 
pF1KB8 YAPIISAEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVA
       :::.:::::::::::.:::::..:::: .::::::::::::::::.::::::::::::.:
CCDS76 YAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAA
             350       360       370       380       390       400 

             340       350       360       370       380       390 
pF1KB8 IAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARL
       ::.:::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
CCDS76 IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARL
             410       420       430       440       450       460 

             400       410       420       430       440         
pF1KB8 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTDSFEEENEGEEF
       :::::::::::::::::::::::::::::::::.:::::::::::.:: . :.::::.
CCDS76 DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSADGEDEGEEY
             470       480       490       500       510         

>>CCDS31792.1 TUBA1B gene_id:10376|Hs108|chr12            (451 aa)
 initn: 2767 init1: 2767 opt: 2774  Z-score: 3535.5  bits: 663.4 E(32554): 1.3e-190
Smith-Waterman score: 2774; 89.8% identity (96.7% similar) in 451 aa overlap (1-449:1-451)

               10        20        30        40        50        60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
       ::::::.::::::::::::::::.::::::: :: . .. .  . ::::.::::::: ::
CCDS31 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
       ::::::..::::::.::::.:::::::::::::::::::::::::::::.::: ::::::
CCDS31 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
       :::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
CCDS31 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
       :::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
CCDS31 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
       ::::::::::::::::.::::::::::::.:::.:::::.::::::::::::::::::::
CCDS31 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440           
pF1KB8 AREDLAALEKDYEEVGTDSFEEENE--GEEF
       ::::.:::::::::::.:: : :.:  :::.
CCDS31 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
              430       440       450 

>>CCDS58227.1 TUBA1A gene_id:7846|Hs108|chr12             (451 aa)
 initn: 2765 init1: 2765 opt: 2772  Z-score: 3532.9  bits: 662.9 E(32554): 1.8e-190
Smith-Waterman score: 2772; 89.8% identity (96.7% similar) in 451 aa overlap (1-449:1-451)

               10        20        30        40        50        60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
       ::::::.::::::::::::::::.::::::: :: . .. .  . ::::.::::::: ::
CCDS58 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
       ::::::..::::::.::::.:::::::::::::::::::::::::::::.::: ::::::
CCDS58 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
       :::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
CCDS58 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS58 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
       :::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
CCDS58 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
       ::::::::::::::::.::::::::::::.:::.::::::::::::::::::::::::::
CCDS58 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440           
pF1KB8 AREDLAALEKDYEEVGTDSFEEENE--GEEF
       ::::.:::::::::::.:: : :.:  :::.
CCDS58 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
              430       440       450 

>>CCDS8781.1 TUBA1A gene_id:7846|Hs108|chr12              (451 aa)
 initn: 2765 init1: 2765 opt: 2772  Z-score: 3532.9  bits: 662.9 E(32554): 1.8e-190
Smith-Waterman score: 2772; 89.8% identity (96.7% similar) in 451 aa overlap (1-449:1-451)

               10        20        30        40        50        60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
       ::::::.::::::::::::::::.::::::: :: . .. .  . ::::.::::::: ::
CCDS87 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
       ::::::..::::::.::::.:::::::::::::::::::::::::::::.::: ::::::
CCDS87 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
       :::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
CCDS87 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS87 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
       :::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
CCDS87 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
       ::::::::::::::::.::::::::::::.:::.::::::::::::::::::::::::::
CCDS87 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440           
pF1KB8 AREDLAALEKDYEEVGTDSFEEENE--GEEF
       ::::.:::::::::::.:: : :.:  :::.
CCDS87 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
              430       440       450 

>>CCDS2158.1 TUBA3E gene_id:112714|Hs108|chr2             (450 aa)
 initn: 2721 init1: 2721 opt: 2727  Z-score: 3475.6  bits: 652.3 E(32554): 2.9e-187
Smith-Waterman score: 2727; 89.3% identity (96.0% similar) in 450 aa overlap (1-449:1-450)

               10        20        30        40        50        60
pF1KB8 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
       ::::::.::::::::::::::::.::::::: :: . .. .  . ::::.::::::: ::
CCDS21 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
       ::::::..:::::::::::.::::::::::::::::::::.::::::::.::: .:::::
CCDS21 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAASNYARGHYTIGKEIVDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
       :::::.: :.:::::::::::::::::::.::::::::.::.::::::::::::::::::
CCDS21 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYSKKSKLEFAIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS21 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
       :::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
CCDS21 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
       :::::::::::::::::::::::::::::.:::.::::::::::::::::::::::::::
CCDS21 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::: ::::::::: ::::::::::::::::::
CCDS21 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLVHKFDLMYAKWAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440          
pF1KB8 AREDLAALEKDYEEVGTDSFEEE-NEGEEF
       ::::::::::: ::::.:: : : .::: .
CCDS21 AREDLAALEKDCEEVGVDSVEAEAEEGEAY
              430       440       450




449 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:11:54 2016 done: Fri Nov  4 13:11:54 2016
 Total Scan time:  2.760 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com