Result of FASTA (omim) for pF1KB8453
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8453, 321 aa
  1>>>pF1KB8453 321 - 321 aa - 321 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8350+/-0.000294; mu= 18.8099+/- 0.018
 mean_var=66.2081+/-13.060, 0's: 0 Z-trim(117.9): 23  B-trim: 0 in 0/54
 Lambda= 0.157623
 statistics sampled from 30223 (30244) to 30223 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.355), width:  16
 Scan time:  6.630

The best scores are:                                      opt bits E(85289)
NP_002396 (OMIM: 602577) beta-1,3-N-acetylglucosam ( 321) 2237 517.1  2e-146
NP_001159815 (OMIM: 602577) beta-1,3-N-acetylgluco ( 307) 1541 358.8 8.4e-99
NP_001035257 (OMIM: 602576,609813) beta-1,3-N-acet ( 379) 1241 290.6 3.4e-78
NP_002908 (OMIM: 602578) beta-1,3-N-acetylglucosam ( 331) 1129 265.1 1.4e-70
NP_001035258 (OMIM: 602576,609813) beta-1,3-N-acet ( 361) 1115 262.0 1.4e-69
NP_001159827 (OMIM: 602576,609813) beta-1,3-N-acet ( 308) 1079 253.7 3.6e-67
NP_002295 (OMIM: 602576,609813) beta-1,3-N-acetylg ( 250) 1072 252.0 9.2e-67
XP_011521889 (OMIM: 602578) PREDICTED: beta-1,3-N- ( 205)  833 197.6 1.8e-50


>>NP_002396 (OMIM: 602577) beta-1,3-N-acetylglucosaminyl  (321 aa)
 initn: 2237 init1: 2237 opt: 2237  Z-score: 2749.9  bits: 517.1 E(85289): 2e-146
Smith-Waterman score: 2237; 100.0% identity (100.0% similar) in 321 aa overlap (1-321:1-321)

               10        20        30        40        50        60
pF1KB8 MQCRLPRGLAGALLTLLCMGLLCLRYHLNLSPQRVQGTPELSQPNPGPPKLQLHDVFIAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MQCRLPRGLAGALLTLLCMGLLCLRYHLNLSPQRVQGTPELSQPNPGPPKLQLHDVFIAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KTTRAFHRLRLELLLDTWVSRTREQTFVFTDSPDKGLQERLGSHLVVTNCSAEHSHPALS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KTTRAFHRLRLELLLDTWVSRTREQTFVFTDSPDKGLQERLGSHLVVTNCSAEHSHPALS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 CKMAAEFDTFLASGLRWFCHVDDDNYVNPRALLQLLRAFPLARDVYVGRPSLNRPIHASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CKMAAEFDTFLASGLRWFCHVDDDNYVNPRALLQLLRAFPLARDVYVGRPSLNRPIHASE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PQPHNRTRLVQFWFATGGAGFCINRKLALKMAPWASGSRFMDTSALIRLPDDCTMGYIIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PQPHNRTRLVQFWFATGGAGFCINRKLALKMAPWASGSRFMDTSALIRLPDDCTMGYIIE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 CKLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGVFEGKLNVIKLQGPFSPEEDPSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CKLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGVFEGKLNVIKLQGPFSPEEDPSR
              250       260       270       280       290       300

              310       320 
pF1KB8 FRSLHCLLYPDTPWCPQLGAR
       :::::::::::::::::::::
NP_002 FRSLHCLLYPDTPWCPQLGAR
              310       320 

>>NP_001159815 (OMIM: 602577) beta-1,3-N-acetylglucosami  (307 aa)
 initn: 2109 init1: 1541 opt: 1541  Z-score: 1894.8  bits: 358.8 E(85289): 8.4e-99
Smith-Waterman score: 2081; 95.0% identity (95.3% similar) in 321 aa overlap (1-321:1-307)

               10        20        30        40        50        60
pF1KB8 MQCRLPRGLAGALLTLLCMGLLCLRYHLNLSPQRVQGTPELSQPNPGPPKLQLHDVFIAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQCRLPRGLAGALLTLLCMGLLCLRYHLNLSPQRVQGTPELSQPNPGPPKLQLHDVFIAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KTTRAFHRLRLELLLDTWVSRTREQTFVFTDSPDKGLQERLGSHLVVTNCSAEHSHPALS
       :::::::::::::::::::::::::.             :  ::::::::::::::::::
NP_001 KTTRAFHRLRLELLLDTWVSRTREQV------------TR--SHLVVTNCSAEHSHPALS
               70        80                      90       100      

              130       140       150       160       170       180
pF1KB8 CKMAAEFDTFLASGLRWFCHVDDDNYVNPRALLQLLRAFPLARDVYVGRPSLNRPIHASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CKMAAEFDTFLASGLRWFCHVDDDNYVNPRALLQLLRAFPLARDVYVGRPSLNRPIHASE
        110       120       130       140       150       160      

              190       200       210       220       230       240
pF1KB8 PQPHNRTRLVQFWFATGGAGFCINRKLALKMAPWASGSRFMDTSALIRLPDDCTMGYIIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQPHNRTRLVQFWFATGGAGFCINRKLALKMAPWASGSRFMDTSALIRLPDDCTMGYIIE
        170       180       190       200       210       220      

              250       260       270       280       290       300
pF1KB8 CKLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGVFEGKLNVIKLQGPFSPEEDPSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CKLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGVFEGKLNVIKLQGPFSPEEDPSR
        230       240       250       260       270       280      

              310       320 
pF1KB8 FRSLHCLLYPDTPWCPQLGAR
       :::::::::::::::::::::
NP_001 FRSLHCLLYPDTPWCPQLGAR
        290       300       

>>NP_001035257 (OMIM: 602576,609813) beta-1,3-N-acetylgl  (379 aa)
 initn: 1240 init1: 1014 opt: 1241  Z-score: 1524.8  bits: 290.6 E(85289): 3.4e-78
Smith-Waterman score: 1241; 62.6% identity (82.2% similar) in 286 aa overlap (32-317:91-375)

              10        20        30        40        50        60 
pF1KB8 QCRLPRGLAGALLTLLCMGLLCLRYHLNLSPQRVQGTPELSQPNPGPPKLQLHDVFIAVK
                                     :  .   :  ..: :    :  .:::::::
NP_001 AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK
               70        80        90       100       110       120

              70        80        90       100       110       120 
pF1KB8 TTRAFHRLRLELLLDTWVSRTREQTFVFTDSPDKGLQERLGSHLVVTNCSAEHSHPALSC
       ::. ::: ::.:::.::.:: .:.::.:::. :..: .. :. .:.::::: ::. ::::
NP_001 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGN-VVITNCSAAHSRQALSC
              130       140       150       160        170         

             130       140       150       160       170       180 
pF1KB8 KMAAEFDTFLASGLRWFCHVDDDNYVNPRALLQLLRAFPLARDVYVGRPSLNRPIHASEP
       :::.:.: :. :: .:::::::::::: ::::.:: ..: .::::::.:::.:::.: : 
NP_001 KMAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMER
     180       190       200       210       220       230         

             190       200       210       220       230       240 
pF1KB8 QPHNRTRLVQFWFATGGAGFCINRKLALKMAPWASGSRFMDTSALIRLPDDCTMGYIIEC
         .:..: :.::::::::::::.: :::::.:::::..::.:.  ::::::::.:::.: 
NP_001 VSENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEA
     240       250       260       270       280       290         

             250       260       270       280       290       300 
pF1KB8 KLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGVFEGKLNVIKLQGPFSPEEDPSRF
        ::  :  : :::::::.:: . :..: ::::::::.::.: :.....:::: : :::::
NP_001 LLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRF
     300       310       320       330       340       350         

             310       320 
pF1KB8 RSLHCLLYPDTPWCPQLGAR
       ::.:: :::::::::.    
NP_001 RSIHCHLYPDTPWCPRTAIF
     360       370         

>>NP_002908 (OMIM: 602578) beta-1,3-N-acetylglucosaminyl  (331 aa)
 initn: 1102 init1: 568 opt: 1129  Z-score: 1388.0  bits: 265.1 E(85289): 1.4e-70
Smith-Waterman score: 1129; 55.2% identity (76.0% similar) in 317 aa overlap (3-317:9-322)

                     10        20        30        40         50   
pF1KB8       MQCRLPRGLAGALLTLLCMGLLCLRYHLNLSPQRVQGTPELSQPN-PGPPKLQL
               ::   .::.:: .::   :: :      .: :. .    . :. :. :.:. 
NP_002 MSRARGALCRACLALAAALAALL---LLPLPLPRAPAPARTPAPAPRAPPSRPAAPSLRP
               10        20           30        40        50       

            60        70        80        90       100       110   
pF1KB8 HDVFIAVKTTRAFHRLRLELLLDTWVSRTREQTFVFTDSPDKGLQERLGSHLVVTNCSAE
        ::::::::::  :  ::.::: ::.::.:.:::.:::. :  :. . :.... ::::: 
NP_002 DDVFIAVKTTRKNHGPRLRLLLRTWISRARQQTFIFTDGDDPELELQGGDRVINTNCSAV
        60        70        80        90       100       110       

           120       130       140       150       160       170   
pF1KB8 HSHPALSCKMAAEFDTFLASGLRWFCHVDDDNYVNPRALLQLLRAFPLARDVYVGRPSLN
       ... :: :::..:.: :. :: .:::::::::::: :.::.:: .:  ..:::.:::::.
NP_002 RTRQALCCKMSVEYDKFIESGRKWFCHVDDDNYVNARSLLHLLSSFSPSQDVYLGRPSLD
       120       130       140       150       160       170       

           180        190       200       210       220       230  
pF1KB8 RPIHASEPQPHNRT-RLVQFWFATGGAGFCINRKLALKMAPWASGSRFMDTSALIRLPDD
       .::.:.:    .::   :.:::::::::::..: :::::.:::: . ::.:.  .:::::
NP_002 HPIEATERVQGGRTVTTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAEQVRLPDD
       180       190       200       210       220       230       

            240       250       260       270       280       290  
pF1KB8 CTMGYIIECKLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGVFEGKLNVIKLQGPF
       ::.:::.:  ::.::  :::::::::.:: :    : .:::::.:  :.  ::... : :
NP_002 CTVGYIVEGLLGARLLHSPLFHSHLENLQRLPPDTLLQQVTLSHGGPENPHNVVNVAGGF
       240       250       260       270       280       290       

            300       310       320      
pF1KB8 SPEEDPSRFRSLHCLLYPDTPWCPQLGAR     
       : ..::.::.:.:::::::: :::.         
NP_002 SLHQDPTRFKSIHCLLYPDTDWCPRQKQGAPTSR
       300       310       320       330 

>>NP_001035258 (OMIM: 602576,609813) beta-1,3-N-acetylgl  (361 aa)
 initn: 1114 init1: 888 opt: 1115  Z-score: 1370.3  bits: 262.0 E(85289): 1.4e-69
Smith-Waterman score: 1115; 61.1% identity (81.5% similar) in 270 aa overlap (32-301:91-359)

              10        20        30        40        50        60 
pF1KB8 QCRLPRGLAGALLTLLCMGLLCLRYHLNLSPQRVQGTPELSQPNPGPPKLQLHDVFIAVK
                                     :  .   :  ..: :    :  .:::::::
NP_001 AAAPGALVRDVHSLSEYFSLLTRARRDAGPPPGAAPRPADGHPRPLAEPLAPRDVFIAVK
               70        80        90       100       110       120

              70        80        90       100       110       120 
pF1KB8 TTRAFHRLRLELLLDTWVSRTREQTFVFTDSPDKGLQERLGSHLVVTNCSAEHSHPALSC
       ::. ::: ::.:::.::.:: .:.::.:::. :..: .. :. .:.::::: ::. ::::
NP_001 TTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGN-VVITNCSAAHSRQALSC
              130       140       150       160        170         

             130       140       150       160       170       180 
pF1KB8 KMAAEFDTFLASGLRWFCHVDDDNYVNPRALLQLLRAFPLARDVYVGRPSLNRPIHASEP
       :::.:.: :. :: .:::::::::::: ::::.:: ..: .::::::.:::.:::.: : 
NP_001 KMAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAMER
     180       190       200       210       220       230         

             190       200       210       220       230       240 
pF1KB8 QPHNRTRLVQFWFATGGAGFCINRKLALKMAPWASGSRFMDTSALIRLPDDCTMGYIIEC
         .:..: :.::::::::::::.: :::::.:::::..::.:.  ::::::::.:::.: 
NP_001 VSENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYIVEA
     240       250       260       270       280       290         

             250       260       270       280       290       300 
pF1KB8 KLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGVFEGKLNVIKLQGPFSPEEDPSRF
        ::  :  : :::::::.:: . :..: ::::::::.::.: :.....:::: : ::::.
NP_001 LLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADPSRW
     300       310       320       330       340       350         

             310       320 
pF1KB8 RSLHCLLYPDTPWCPQLGAR
                           
NP_001 GN                  
     360                   

>>NP_001159827 (OMIM: 602576,609813) beta-1,3-N-acetylgl  (308 aa)
 initn: 1071 init1: 1014 opt: 1079  Z-score: 1327.0  bits: 253.7 E(85289): 3.6e-67
Smith-Waterman score: 1079; 65.4% identity (85.5% similar) in 234 aa overlap (84-317:72-304)

            60        70        80        90       100       110   
pF1KB8 HDVFIAVKTTRAFHRLRLELLLDTWVSRTREQTFVFTDSPDKGLQERLGSHLVVTNCSAE
                                     .:::.:::. :..: .. :. .:.::::: 
NP_001 TDRWTDGWMDGWMDEWSPTPALRSYGGGLSQQTFIFTDGEDEALARHTGN-VVITNCSAA
              50        60        70        80        90        100

           120       130       140       150       160       170   
pF1KB8 HSHPALSCKMAAEFDTFLASGLRWFCHVDDDNYVNPRALLQLLRAFPLARDVYVGRPSLN
       ::. :::::::.:.: :. :: .:::::::::::: ::::.:: ..: .::::::.:::.
NP_001 HSRQALSCKMAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLD
              110       120       130       140       150       160

           180       190       200       210       220       230   
pF1KB8 RPIHASEPQPHNRTRLVQFWFATGGAGFCINRKLALKMAPWASGSRFMDTSALIRLPDDC
       :::.: :   .:..: :.::::::::::::.: :::::.:::::..::.:.  :::::::
NP_001 RPIQAMERVSENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDC
              170       180       190       200       210       220

           240       250       260       270       280       290   
pF1KB8 TMGYIIECKLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGVFEGKLNVIKLQGPFS
       :.:::.:  ::  :  : :::::::.:: . :..: ::::::::.::.: :.....::::
NP_001 TIGYIVEALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFS
              230       240       250       260       270       280

           300       310       320 
pF1KB8 PEEDPSRFRSLHCLLYPDTPWCPQLGAR
        : :::::::.:: :::::::::.    
NP_001 VEADPSRFRSIHCHLYPDTPWCPRTAIF
              290       300        

>>NP_002295 (OMIM: 602576,609813) beta-1,3-N-acetylgluco  (250 aa)
 initn: 1064 init1: 1014 opt: 1072  Z-score: 1319.6  bits: 252.0 E(85289): 9.2e-67
Smith-Waterman score: 1072; 65.2% identity (85.4% similar) in 233 aa overlap (85-317:15-246)

           60        70        80        90       100       110    
pF1KB8 DVFIAVKTTRAFHRLRLELLLDTWVSRTREQTFVFTDSPDKGLQERLGSHLVVTNCSAEH
                                     .::.:::. :..: .. :. .:.::::: :
NP_002                 MTPGRCCLAADIQVETFIFTDGEDEALARHTGN-VVITNCSAAH
                               10        20        30         40   

          120       130       140       150       160       170    
pF1KB8 SHPALSCKMAAEFDTFLASGLRWFCHVDDDNYVNPRALLQLLRAFPLARDVYVGRPSLNR
       :. :::::::.:.: :. :: .:::::::::::: ::::.:: ..: .::::::.:::.:
NP_002 SRQALSCKMAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDR
            50        60        70        80        90       100   

          180       190       200       210       220       230    
pF1KB8 PIHASEPQPHNRTRLVQFWFATGGAGFCINRKLALKMAPWASGSRFMDTSALIRLPDDCT
       ::.: :   .:..: :.::::::::::::.: :::::.:::::..::.:.  ::::::::
NP_002 PIQAMERVSENKVRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCT
           110       120       130       140       150       160   

          240       250       260       270       280       290    
pF1KB8 MGYIIECKLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGVFEGKLNVIKLQGPFSP
       .:::.:  ::  :  : :::::::.:: . :..: ::::::::.::.: :.....:::: 
NP_002 IGYIVEALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSV
           170       180       190       200       210       220   

          300       310       320 
pF1KB8 EEDPSRFRSLHCLLYPDTPWCPQLGAR
       : :::::::.:: :::::::::.    
NP_002 EADPSRFRSIHCHLYPDTPWCPRTAIF
           230       240       250

>>XP_011521889 (OMIM: 602578) PREDICTED: beta-1,3-N-acet  (205 aa)
 initn: 826 init1: 568 opt: 833  Z-score: 1027.1  bits: 197.6 E(85289): 1.8e-50
Smith-Waterman score: 833; 60.7% identity (81.1% similar) in 196 aa overlap (123-317:1-196)

            100       110       120       130       140       150  
pF1KB8 PDKGLQERLGSHLVVTNCSAEHSHPALSCKMAAEFDTFLASGLRWFCHVDDDNYVNPRAL
                                     :..:.: :. :: .:::::::::::: :.:
XP_011                               MSVEYDKFIESGRKWFCHVDDDNYVNARSL
                                             10        20        30

            160       170       180        190       200       210 
pF1KB8 LQLLRAFPLARDVYVGRPSLNRPIHASEPQPHNRT-RLVQFWFATGGAGFCINRKLALKM
       :.:: .:  ..:::.:::::..::.:.:    .::   :.:::::::::::..: :::::
XP_011 LHLLSSFSPSQDVYLGRPSLDHPIEATERVQGGRTVTTVKFWFATGGAGFCLSRGLALKM
               40        50        60        70        80        90

             220       230       240       250       260       270 
pF1KB8 APWASGSRFMDTSALIRLPDDCTMGYIIECKLGGRLQPSPLFHSHLETLQLLRTAQLPEQ
       .:::: . ::.:.  .:::::::.:::.:  ::.::  :::::::::.:: :    : .:
XP_011 SPWASLGSFMSTAEQVRLPDDCTVGYIVEGLLGARLLHSPLFHSHLENLQRLPPDTLLQQ
              100       110       120       130       140       150

             280       290       300       310       320      
pF1KB8 VTLSYGVFEGKLNVIKLQGPFSPEEDPSRFRSLHCLLYPDTPWCPQLGAR     
       ::::.:  :.  ::... : :: ..::.::.:.:::::::: :::.         
XP_011 VTLSHGGPENPHNVVNVAGGFSLHQDPTRFKSIHCLLYPDTDWCPRQKQGAPTSR
              160       170       180       190       200     




321 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:01:38 2016 done: Fri Nov  4 13:01:39 2016
 Total Scan time:  6.630 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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