Result of FASTA (ccds) for pF1KB8411
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8411, 866 aa
  1>>>pF1KB8411 866 - 866 aa - 866 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2298+/-0.000902; mu= 5.3560+/- 0.055
 mean_var=238.5945+/-48.196, 0's: 0 Z-trim(114.4): 16  B-trim: 0 in 0/54
 Lambda= 0.083032
 statistics sampled from 14937 (14950) to 14937 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.459), width:  16
 Scan time:  4.950

The best scores are:                                      opt bits E(32554)
CCDS34595.1 RNF216 gene_id:54476|Hs108|chr7        ( 866) 6077 741.3 1.7e-213
CCDS34594.1 RNF216 gene_id:54476|Hs108|chr7        ( 923) 5614 685.9 8.9e-197


>>CCDS34595.1 RNF216 gene_id:54476|Hs108|chr7             (866 aa)
 initn: 6077 init1: 6077 opt: 6077  Z-score: 3946.4  bits: 741.3 E(32554): 1.7e-213
Smith-Waterman score: 6077; 100.0% identity (100.0% similar) in 866 aa overlap (1-866:1-866)

               10        20        30        40        50        60
pF1KB8 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DDVILTEDDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DDVILTEDDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VIILEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VIILEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LNQQPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LNQQPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 EFEDQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EFEDQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 GFIEEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GFIEEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 SKLTPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SKLTPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 ETSGKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ETSGKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 FYEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FYEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKEC
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 LIRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LIRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYAD
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 ELVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ELVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 TSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB8 GAPCQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPVEKVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GAPCQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPVEKVQR
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB8 VEALPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPAPYVPPLPNVRVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VEALPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPAPYVPPLPNVRVN
              790       800       810       820       830       840

              850       860      
pF1KB8 YDFGPIHMPLEHNLPMHFGPQPRHRF
       ::::::::::::::::::::::::::
CCDS34 YDFGPIHMPLEHNLPMHFGPQPRHRF
              850       860      

>>CCDS34594.1 RNF216 gene_id:54476|Hs108|chr7             (923 aa)
 initn: 5614 init1: 5614 opt: 5614  Z-score: 3646.3  bits: 685.9 E(32554): 8.9e-197
Smith-Waterman score: 5765; 93.7% identity (93.7% similar) in 898 aa overlap (26-866:26-923)

               10        20        30        40        50        60
pF1KB8 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
                                :::::::::::::::::::::::::::::::::::
CCDS34 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
               10        20        30        40        50        60

                                                                   
pF1KB8 DDVILTE-----------------------------------------------------
       :::::::                                                     
CCDS34 DDVILTETNKPQRSRPNLIKPAAQWQDLKRLGEERPKKSRAAFESDKSSYFSVCNNPLFD
               70        80        90       100       110       120

            70        80        90       100       110       120   
pF1KB8 ----DDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQKVII
           ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SGAQDDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQKVII
              130       140       150       160       170       180

           130       140       150       160       170       180   
pF1KB8 LEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQSLNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQSLNQ
              190       200       210       220       230       240

           190       200       210       220       230       240   
pF1KB8 QPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLGEFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLGEFE
              250       260       270       280       290       300

           250       260       270       280       290       300   
pF1KB8 DQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVANGFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVANGFI
              310       320       330       340       350       360

           310       320       330       340       350       360   
pF1KB8 EEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDYSKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDYSKL
              370       380       390       400       410       420

           370       380       390       400       410       420   
pF1KB8 TPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSPETS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSPETS
              430       440       450       460       470       480

           430       440       450       460       470       480   
pF1KB8 GKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQEFYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQEFYE
              490       500       510       520       530       540

           490       500       510       520       530       540   
pF1KB8 QKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKECLIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKECLIR
              550       560       570       580       590       600

           550       560       570       580       590       600   
pF1KB8 YAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYADELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYADELV
              610       620       630       640       650       660

           610       620       630       640       650       660   
pF1KB8 RCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYRTSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYRTSI
              670       680       690       700       710       720

           670       680       690       700       710       720   
pF1KB8 EEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSPGAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSPGAP
              730       740       750       760       770       780

           730       740       750       760       770       780   
pF1KB8 CQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPVEKVQRVEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 CQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPVEKVQRVEA
              790       800       810       820       830       840

           790       800       810       820       830       840   
pF1KB8 LPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPAPYVPPLPNVRVNYDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPAPYVPPLPNVRVNYDF
              850       860       870       880       890       900

           850       860      
pF1KB8 GPIHMPLEHNLPMHFGPQPRHRF
       :::::::::::::::::::::::
CCDS34 GPIHMPLEHNLPMHFGPQPRHRF
              910       920   




866 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:42:52 2016 done: Fri Nov  4 12:42:53 2016
 Total Scan time:  4.950 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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