GENSCAN 1.0	Date run:  4-Nov-116	Time: 12:40:35

Sequence gi568815586f:123912145_124112927 : 200783 bp : 46.18% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    954   1171  218  2  2   69   71   228 0.942  16.50
 1.02 Intr +   2185   2406  222  1  0   90   89   470 0.999  44.54
 1.03 Intr +   2708   2855  148  2  1   70   55   213 0.980  16.44
 1.04 Intr +   4313   4592  280  1  1  124   99   294 0.999  31.15
 1.05 Intr +   5440   5693  254  2  2   63   78   596 0.630  53.25
 1.06 Intr +   6532   6805  274  0  1   96   99   512 0.986  50.21
 1.07 Intr +  12134  12288  155  0  2   65   83    32 0.496   0.19
 1.08 Intr +  12906  13060  155  2  2   75  100   228 0.995  21.57
 1.09 Intr +  14493  14676  184  0  1   85   86    90 0.981   8.29
 1.10 Intr +  16027  16164  138  0  0   54   33    89 0.491   0.66
 1.11 Intr +  16243  16443  201  0  0  113   47   222 0.652  20.08
 1.12 Intr +  17131  17340  210  0  0   79   61   297 0.999  25.21
 1.13 Intr +  17520  17615   96  2  0  103   75    88 0.987   9.21
 1.14 Intr +  18258  18429  172  2  1   73   77   344 0.999  31.32
 1.15 Intr +  19197  19328  132  1  0   80   97   138 0.999  14.52
 1.16 Intr +  19492  19703  212  2  2   42   84   304 0.977  24.03
 1.17 Intr +  19797  19964  168  2  0   52  106   110 0.998   9.34
 1.18 Intr +  21187  21367  181  0  1  137   81   293 0.998  32.94
 1.19 Intr +  22477  22622  146  2  2   92   72   229 0.743  21.70
 1.20 Term +  23191  23337  147  0  0  101   37   101 0.777   4.20
 1.21 PlyA +  24239  24244    6                               1.05

 2.06 PlyA -  24378  24373    6                              -3.24
 2.05 Term -  25686  24914  773  1  2   84   48  1048 0.923  93.96
 2.04 Intr -  30641  30600   42  0  0   77  110    28 0.785   2.11
 2.03 Intr -  31349  31203  147  0  0   74   88   237 0.272  22.51
 2.02 Intr -  34923  34650  274  0  1   40   40    93 0.003  -3.19
 2.01 Init -  42738  42616  123  0  0   72   58   139 0.222   7.47
 2.00 Prom -  51835  51796   40                              -6.06

 3.00 Prom +  52256  52295   40                              -4.76
 3.01 Init +  61667  61782  116  1  2  101   64   156 0.731  12.21
 3.02 Intr +  61810  61876   67  1  1   52   97    81 0.531   4.31
 3.03 Intr +  76879  76957   79  0  1   70   88    14 0.012  -1.28
 3.04 Term +  78438  78481   44  1  2  107   53    32 0.047  -1.08
 3.05 PlyA +  79386  79391    6                               1.05

 4.00 Prom +  88391  88430   40                              -3.36
 4.01 Sngl + 100001 100786  786  1  0   71   41   319 0.922  21.45
 4.02 PlyA + 101959 101964    6                               1.05

 5.04 PlyA - 102996 102991    6                               1.05
 5.03 Term - 116423 116138  286  1  1   37   39   224 0.048   7.28
 5.02 Intr - 122270 122193   78  1  0   60  103    45 0.052   1.87
 5.01 Init - 131801 131737   65  2  2   90   70    28 0.151   1.15
 5.00 Prom - 135110 135071   40                               0.54

 6.00 Prom + 138754 138793   40                              -2.46
 6.01 Sngl + 177251 177622  372  1  0   72   39   344 0.660  24.03
 6.02 PlyA + 179588 179593    6                              -0.45

 7.02 PlyA - 179779 179774    6                              -1.75
 7.01 Sngl - 181546 180983  564  1  0   44   43   946 0.864  81.85
 7.00 Prom - 192134 192095   40                              -5.16

 8.02 PlyA - 192792 192787    6                               1.05
 8.01 Term - 193766 193557  210  2  0   27   42   183 0.480   4.89

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  93889  93762  128  2  2   57   55   155 0.867   7.54


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586f:123912145_124112927|GENSCAN_predicted_peptide_1|1230_aa
VARLERNFYLTKRELERIQNELAAIQKELETLGAKYEAAILEKQKLQEEAEIMERRLIAA
DKLISGLGSENIRWLNDLDELMHRRVKLLGDCLLCAAFLSYEGAFTWEFRDEMVNRIWQN
DILEREIPLSQPFRLESLLTDDVEISRWGSQGLPPDELSVQNGILTTRASRFPLCIDPQQ
QALNWIKRKEEKNNLRVASFNDPDFLKQLEMSIKYGTPFLFRDVDEYIDPVIDNVLEKNI
KVSQGRQFIILGDKEVDYDSNFRLYLNTKLANPRYSPSVFGKAMVINYTVTLKGLEDQLL
SVLVAYERRELEEQREHLIQETSENKNLLKDLEDSLLRELATSTGNMLDNVDLVHTLEET
KSKATEVATTVEEAVSEKLKLAEKTALDIDRLRDGYRPAARRGAILFFVLSEMALVNSMY
QYSLIAFLEVFRLSLKKSLPDSILMKRLRNIMDTLTFSIYNHGCTGNISLEKSKRKKPCA
WLSDQGWEDIILLSEMFSDNFGQLPDDVENNQTVWQEWYDLDSLEQFPVPLGYDNNITPF
QKLLILRCFRVDRVYRAVTDYVTVTMGEKYVQPPMISFEAIFEQSTPHSPIVFILSPGSD
PATDLMKLAERSGFGGNRLKFLAMGQGQEKAGCDQLSAPTGPMGFLKDGLFEGSTCSSWI
LGLLLASAGAAIALLWVALQLLETAVARGQWLMLQNCHLLVKWLKDLEKSLERITKPHPD
FRLWLTTDPTKGFPIGILQKSLKVVTEPPNGLKLNMRATYFKISHEMLDQCPHPAFKPLV
YVLAFFHAVVQERRKFGKIGWNVYYDFNESDFQVCMEILNTYLTKAFQQRDPRIPWGSLK
YLIGEVMYGGRAIDSFDRRILTIYMDEYLGDFIFDTFQPFHFFRNKEVDYKIPVGDEKEK
FVEAIEALPLANTPEVFGLHPNAEIGYYTQAARDMWAHLLELQPQTGESSSGISRDDYIG
QVAKEIENKMPKVFDLDQVRKRLGTGLSPTSVVLLQELERFNKLVVRMTKSLAELQRALA
GEVGMSNELDDVARSLFIGHIPNIWRRLAPDTLKSLGNWMVYFLRRFSQYMLWVTESEPS
VMWLSGLHIPESYLTALVQATCRKNGWPLDRSTLFTQVTKFQDADEVNERAGQGCFVSGL
YLEGADWDIEKGCLIKSKPKVLVVDLPILKIIPIEAHRLKLQNTFRTPVYTTSMRRNAMG
VGLVFEADLFTTRHISHWVLQGVCLTLNSD

>gi568815586f:123912145_124112927|GENSCAN_predicted_CDS_1|3693_bp
gtggccaggctggagcggaatttttacctcactaaacgggaactggaaaggatccagaat
gagttggcagcaattcagaaagagctggaaacattgggtgccaaatatgaggccgccata
ctggaaaagcagaagctgcaggaagaagccgagatcatggagaggcggctgattgccgca
gacaaactcatctcgggtctggggtcagaaaacatcaggtggctgaacgacctggatgag
ctgatgcaccggcgcgtgaagctgctgggggactgcctgctctgcgcggctttcctcagc
tacgagggagccttcacctgggagttccgtgacgagatggtcaatcggatttggcaaaat
gacatcctggagcgggagatccccctgagccagcctttccggctggaaagcctgctcacg
gatgatgttgagatcagcagatggggatcccagggccttccccccgatgagctctccgtt
cagaatggcatcctcaccacccgggccagccgcttccctctgtgtatcgacccccagcag
caggccctcaactggatcaagagaaaagaggagaagaacaatctgcgggtcgcttccttt
aatgaccctgacttcctcaagcagctagagatgtccataaagtacgggacccctttcctg
ttccgcgatgttgatgaatacatcgatcctgtgattgacaacgtcttagaaaaaaatata
aaagtctcccaaggacggcagtttattatcctgggagacaaggaagtggactatgattca
aatttcagactgtacctgaacaccaagctggccaatcccagatattccccatccgtgttt
gggaaagctatggtgatcaattacactgtcacgctgaagggcctggaggaccagctgctg
agcgtgctggtggcttacgagaggcgggagctggaggagcagcgggagcacctcatccag
gagaccagcgagaacaagaacctgctcaaggacctggaagattccctccttcgggagctg
gccacgtccacggggaacatgctggacaatgtggacctggtgcacaccctggaggagacc
aaatccaaggcaacagaggtagcaaccacagtggaagaggccgtctcagagaaactcaag
ctggcggagaagacagccttggacatcgacaggctgcgggatggctaccggccagcagcc
aggaggggggccatcctgttcttcgtcctgtctgagatggccctggtgaactccatgtac
cagtactccctgattgccttcttagaggtcttcaggctgtcactgaagaagtcgctgcct
gattccatcctcatgaaacgcctgaggaacatcatggacacgctgaccttcagcatctat
aaccacggctgcacaggaaacatttccctggagaaaagcaaaagaaaaaagccctgcgct
tggttgtctgaccaaggatgggaagatatcattcttttatcagaaatgttttcagacaac
tttgggcaacttcctgatgatgttgagaataatcagactgtctggcaggagtggtatgac
ctggattcactggagcagtttcccgtccccttgggttacgataacaacatcacccctttc
cagaagttgcttattttgcgctgtttccgtgtggatcgggtctatcgggccgtgactgac
tatgtgactgtaacaatgggagagaagtatgtgcagcccccaatgatcagctttgaagct
atttttgagcagagcactccacattcgcccattgtgtttatcctgagtcctggctccgac
cctgccactgatcttatgaaattagcagagcgaagtggttttggaggaaatcgcctcaaa
ttccttgcaatgggtcaaggtcaagaaaaggctgggtgtgaccagctcagtgcacccacg
gggcccatggggtttctcaaagatggtttatttgaaggctccacctgtagctcctggatc
ctcggcttgcttttggcttctgctggagctgccatcgcccttctgtgggtggccctgcag
ctgctggagacggcggtggctcgggggcagtggctgatgctgcagaactgccacctcctg
gtcaagtggctgaaagatctggagaagtccctggagaggatcaccaagccccacccagac
ttccgcctgtggctcaccacggaccccaccaagggcttccccattgggattctgcagaag
tccctaaaggttgtcaccgagccacccaatgggctgaaactcaacatgagggcaacttac
ttcaagatctctcacgaaatgctggaccagtgcccgcaccctgccttcaagccgctggtc
tacgtgctggcgttctttcatgctgtggtgcaggagagaaggaagtttgggaagattggc
tggaacgtgtactatgacttcaatgagtctgacttccaggtctgcatggaaattctgaac
acgtacttaacgaaagccttccagcaacgggacccaaggatcccgtggggcagcctcaag
tacctaattggagaggtcatgtatggaggacgggccatcgacagctttgatcgccgcatc
ctgaccatctacatggatgagtacctgggggacttcatttttgatactttccagccattc
cacttcttccggaacaaggaagtggactacaaaatccctgttggtgatgaaaaggagaaa
tttgttgaagccatcgaggccctcccgcttgccaacacgccagaagtgtttggtctccac
cccaacgctgagattggctattacacgcaggcggctcgagacatgtgggctcacctgctg
gagctgcagcctcagacaggggaatccagcagtggtatcagccgcgatgattatattggc
caagtggccaaagaaatagaaaacaagatgcccaaagtctttgacttggaccaggtgagg
aagcgcctcggaacaggactctcccccacttcggtggtgctcctgcaggaactggaacgc
ttcaacaagcttgtggtccggatgacgaagtctctggctgaacttcaaagggccttggct
ggagaagttggaatgagcaatgagttagatgatgtggccaggtctctttttatcgggcat
atccctaatatctggagaaggcttgctcctgacaccttaaagtcccttggaaactggatg
gtctacttcctgcggcggttcagccagtacatgttgtgggtgaccgagagcgagcccagc
gtgatgtggctctcggggctgcacatccctgagtcctacctcacggcgctggtgcaggcc
acctgccggaagaacggctggccactggaccgctccaccttgttcacacaagtgaccaag
ttccaggatgcagatgaagtgaatgagcgggcgggacaaggatgctttgtctcaggactg
tacctggaaggtgctgactgggatatagaaaaaggatgtcttatcaagagcaaacccaag
gtgctggttgtggacctgccgatcctgaagatcatccccattgaagcccatcgcctcaag
ctgcagaatactttccggacccccgtctacaccacctccatgagaaggaacgccatggga
gtcggcttggtttttgaagctgatctctttaccacgaggcacatttctcactgggtgctg
caaggagtatgcctcaccctgaattctgattaa

>gi568815586f:123912145_124112927|GENSCAN_predicted_peptide_2|452_aa
MECWCSLLLGWGLPPAGLLAVRNPNFHEAQDTPRRHHTTQMGWQGRPAGCSECGARQAHA
HPELQLACKRRRTQPRFCLRLSLHTSLQAEGAGSGLGQPRKGLPQCSGGLKGSSSAAKVG
AQAEEVLRASEGCPLDVSMAATNLENQLHSAQKNLLFLQREHASTLKGLHSEIRRLQQHC
TDLTYELTVKSSEQTGDGTSKSSELKKRCEELEAQLKVKENENAELLKELEQKNAMITVL
ENTIKEREKKYLEELKAKSHKLTLLSSELEQRASTIAYLTSQLHAAKKKLMSSSGTSDAS
PSGSPVLASYKPAPPKDKLPETPRRRMKKSLSAPLHPEFEEVYRFGAESRKLLLREPVDA
MPDPTPFLLARESAEVHLIKERPLVIPPIASDRSGEQHSPAREKPHKAHVGVAHRIHHAT
PPQAQPEVKTLAVDQVNGGKVVRKHSGTDRTV

>gi568815586f:123912145_124112927|GENSCAN_predicted_CDS_2|1359_bp
atggaatgctggtgctccctcctcctggggtggggtctgccgcccgctggcctcctggcg
gttaggaacccaaacttccatgaggcccaggacactcccagaaggcaccacacgacacag
atgggctggcagggccggcccgctggctgctctgagtgcggggcccgccaagcccacgcc
cacccagaactccagctggcctgcaagcgccgccgcacgcagccccggttctgcttgcgc
ctctccctccacacctccctgcaagctgagggagcgggctccggccttggccagcccaga
aaggggctcccacagtgcagcggtgggctgaagggctcctcaagtgccgccaaagtggga
gcccaggcagaggaggtgctgagagcaagcgagggctgtcctctggatgtcagcatggca
gccacaaacctggagaaccagctgcacagcgcacagaagaacctcctgttccttcagcgg
gagcatgccagcacgctcaaggggctgcactccgagatcaggcggctgcagcagcactgc
acagatttaacatatgagctgacagtcaaaagttcggaacagacaggagacgggacttct
aaaagcagtgaattaaagaaaagatgtgaagagctggaagcccaactgaaagtgaaagag
aacgaaaatgctgagttgttgaaagaactggagcagaaaaacgcgatgatcacagtgctg
gagaacaccatcaaggagcgagagaagaagtacctggaggagctgaaggccaagagtcac
aagctgaccctgctgtctagcgagctggagcagcgggccagcaccatcgcctacctgacc
tcccagctgcacgccgccaagaagaagctcatgagctccagcgggacctcagatgccagc
ccgtcagggagccccgtgctggccagctacaagccagcgccccccaaagacaagctaccc
gaaacgcctcgccgccgcatgaaaaagagcctctcagcccccttgcacccggaatttgaa
gaggtctacagattcggggcagagagcaggaaactccttttgcgggaaccagtggatgct
atgcccgaccccaccccatttctgctggctagggagtccgccgaggtccacctcatcaaa
gagaggcccctcgtcatcccccccatcgcctccgaccgaagcggcgagcagcacagcccg
gcccgcgaaaagccgcacaaggcccacgtcggggtggcacatcggatccaccacgccacc
ccgccgcaggcccagcccgaggtgaagaccctggcggtcgaccaggtgaacggaggcaag
gtggtgaggaagcactcagggacggacagaactgtgtga

>gi568815586f:123912145_124112927|GENSCAN_predicted_peptide_3|101_aa
MAAPGDRGAGRLRRSRLHGVLCVFQGALRPAEEASIPLSAEGCCRRTPPLFDHNKGRILT
QRLVSQALGFCLPRLHFPMQQGGLAVGGLTTTVEGGNKFSK

>gi568815586f:123912145_124112927|GENSCAN_predicted_CDS_3|306_bp
atggccgcgccaggggaccggggagccgggcggctgcggaggagccggctgcatggggtg
ctgtgtgtttttcagggcgccctgcgtccggcagaggaggcgagcatcccgctcagcgca
gaaggctgctgccgccggacgcctccattgtttgaccacaacaagggccggattctcacc
cagaggctggtttctcaggccctgggcttctgccttcccagacttcactttcccatgcaa
caaggaggattggctgtgggaggtcttactaccacagtggaaggaggaaacaagtttagt
aaatga

>gi568815586f:123912145_124112927|GENSCAN_predicted_peptide_4|261_aa
MIYKCPMCREFFSERADLFMHQKIHTAEKPHKCDKCDKGFFHISELHIHWRDHTGEKVYK
CDDCGKDFSTTTKLNRHKKIHTVEKPYKCYECGKAFNWSSHLQIHMRVHTGEKPYVCSEC
GRGFSNSSNLCMHQRVHTGEKPFKCEECGKAFRHTSSLCMHQRVHTGEKPYKCYECGKAF
SQSSSLCIHQRVHTGEKPYRCCGCGKAFSQSSSLCIHQRVHTGEKPFKCDECGKAFSQST
SLCIHQRVHTKERNHLKISVI

>gi568815586f:123912145_124112927|GENSCAN_predicted_CDS_4|786_bp
atgatctacaagtgccccatgtgtagggaatttttctctgagagagcagatctttttatg
catcagaaaattcacacagctgagaagccccataaatgtgacaagtgtgataagggtttc
tttcatatatcagaacttcatattcattggagagaccatacaggagagaaggtctataaa
tgtgatgattgtggtaaggattttagcactacaacaaaacttaatagacataagaaaatc
cacacagtggagaagccctataaatgttacgagtgtggcaaagccttcaattggagctcc
catcttcaaattcatatgagagttcatacaggtgagaaaccgtatgtctgtagtgagtgt
ggaaggggctttagtaatagttcaaacctttgcatgcatcagagagtccacaccggagag
aagccctttaaatgtgaagagtgtgggaaggccttcaggcacacctccagcctctgcatg
catcaaagagtccacacaggagagaaaccctataaatgttatgagtgtgggaaggcgttc
agtcagagttcgagcctctgcatccaccagagagtccacactggagagaaaccctataga
tgttgtggatgtgggaaggccttcagtcagagttcgagcctgtgcatccaccagagagtc
cacacaggagagaaacctttcaaatgtgatgagtgcggaaaggccttcagtcagagtacg
agcctctgcatccaccagagagtccacacaaaggagagaaaccatctcaaaatatcagtt
atataa

>gi568815586f:123912145_124112927|GENSCAN_predicted_peptide_5|142_aa
MIQSAATWLSEVLCPLLSETVRQFKFQQQRGSYSSPDAGCDFMLQFFMSGVTRDHLPVPS
NTGLLGSTLGPQRFACRQMTTTPLPTHCCHHASSYSQVCQTLLPLPDAGSAVVTFTGTAS
SDGQCQPFCKITTLGTTATSWG

>gi568815586f:123912145_124112927|GENSCAN_predicted_CDS_5|429_bp
atgatccagagtgcagccacgtggctttctgaggtgctgtgtcccctgctctctgagact
gtaagacaattcaaattccagcaacaacgaggtagttacagttccccagacgcaggctgt
gacttcatgcttcagttcttcatgtctggagtcaccagggaccacctcccagtgccttca
aacacggggctcttgggcagcactctgggacctcagcgcttcgcctgccggcaaatgacc
accacaccgctgccaacccactgctgccaccacgcttccagctacagccaggtctgccag
accctgctccctctgccagatgcaggctcagctgttgtcaccttcactgggacagccagc
tctgacgggcagtgccagcctttctgcaagatcacaacacttgggaccactgccacttcc
tggggatag

>gi568815586f:123912145_124112927|GENSCAN_predicted_peptide_6|123_aa
MSQPGNQHRHRYVNNSAMSQPGNQHRHRYVNNSAMSQPGNQHRHRYVNNSAMSQPGNQHR
HRYVNNSAMSQPGNQHRHRYVNNSAMSQPGNQHRHRYVNNSAMSQPGNQHRHRYASVVKP
FSF

>gi568815586f:123912145_124112927|GENSCAN_predicted_CDS_6|372_bp
atgtcacaaccaggaaatcagcacagacacaggtatgtcaacaatagcgccatgtcacaa
ccaggaaatcagcacagacacaggtatgtcaacaatagcgccatgtcacaaccaggaaat
cagcacagacacaggtatgtcaacaatagcgccatgtcacaaccaggaaatcagcacaga
cacaggtatgtcaacaatagcgccatgtcacaaccaggaaatcagcacagacacaggtat
gtcaacaatagcgccatgtcacaaccaggaaatcagcacagacacaggtatgtcaacaat
agcgccatgtcacaaccaggaaatcagcacagacacaggtatgcctctgtcgtcaagccc
ttcagcttctag

>gi568815586f:123912145_124112927|GENSCAN_predicted_peptide_7|187_aa
MIFSITIITITIITITIIITIMITITIIIITITTTIIITITITTIITNTITTIIITITII
TTIMTTITIIITSSPSSHHHHHHHHHHHIHHHHHHHHHHTITIITITITIITITIITTIM
ITITIIITPSPSSHHHHHHHHHHHHNHHYHHDHHHHHHTITINIITPSPSSPLPSPSPSP
SSSSLPS

>gi568815586f:123912145_124112927|GENSCAN_predicted_CDS_7|564_bp
atgatcttctccatcactatcatcaccatcaccatcatcaccatcaccatcatcatcacc
atcatgatcaccatcaccatcattatcatcaccatcaccaccaccatcatcatcaccatc
accatcaccaccatcatcaccaacaccatcaccaccatcatcatcaccatcaccatcatc
actaccatcatgaccaccatcaccatcatcatcacatcatcaccatcatcacaccaccat
caccatcaccatcatcaccatcacattcatcaccaccaccatcaccatcatcatcacacc
attaccatcatcaccatcaccatcaccatcatcaccatcacaatcatcactaccatcatg
atcaccatcaccatcatcatcacaccatcaccatcatcacaccatcaccatcaccaccat
caccatcatcatcacaatcatcactaccatcatgatcaccatcaccatcatcataccatc
accatcaacatcatcacaccatcaccatcatcaccattaccatcaccatcaccatcacca
tcatcatcatcactaccatcatga

>gi568815586f:123912145_124112927|GENSCAN_predicted_peptide_8|69_aa
RLAIVPVRAKCRGFVLIELNRAIMLTAWPKIPFLGICEAKNPRSENERLAAILEAARSHL
GSSKNKDPR

>gi568815586f:123912145_124112927|GENSCAN_predicted_CDS_8|210_bp
aggctcgccattgttcctgtgcgggctaagtgccgggggttcgtcctaatcgagctgaat
agagccataatgctcaccgcatggcccaagattccattccttggaatctgtgaggccaag
aaccccaggtcagagaacgagaggcttgccgccatcttggaagcagcccgcagccatctt
gggagttctaagaacaaggatccccggtaa