Result of FASTA (omim) for pF1KB7630
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7630, 375 aa
  1>>>pF1KB7630 375 - 375 aa - 375 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3004+/-0.000315; mu= 12.8148+/- 0.020
 mean_var=98.2636+/-20.369, 0's: 0 Z-trim(118.5): 34  B-trim: 0 in 0/50
 Lambda= 0.129383
 statistics sampled from 31417 (31451) to 31417 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.369), width:  16
 Scan time:  8.340

The best scores are:                                      opt bits E(85289)
NP_003884 (OMIM: 603451) LIM domain-binding protei ( 375) 2591 493.6  3e-139
NP_001106878 (OMIM: 603451) LIM domain-binding pro ( 411) 2591 493.7 3.2e-139
NP_001308541 (OMIM: 603451) LIM domain-binding pro ( 409) 2562 488.3 1.4e-137
XP_016872356 (OMIM: 603451) PREDICTED: LIM domain- ( 339) 2083 398.8 9.7e-111
XP_016872357 (OMIM: 603451) PREDICTED: LIM domain- ( 337) 2072 396.7  4e-110
NP_001281 (OMIM: 603450) LIM domain-binding protei ( 373) 1984 380.3 3.8e-105
XP_005248254 (OMIM: 603450) PREDICTED: LIM domain- ( 372) 1967 377.2 3.4e-104
NP_001291363 (OMIM: 603450) LIM domain-binding pro ( 371) 1955 374.9 1.6e-103
XP_016864302 (OMIM: 603450) PREDICTED: LIM domain- ( 370) 1938 371.8 1.5e-102
XP_006714038 (OMIM: 603450) PREDICTED: LIM domain- ( 411) 1867 358.5 1.5e-98
XP_016864307 (OMIM: 603450) PREDICTED: LIM domain- ( 330) 1862 357.5 2.5e-98
XP_006714039 (OMIM: 603450) PREDICTED: LIM domain- ( 410) 1850 355.4 1.4e-97
XP_006714040 (OMIM: 603450) PREDICTED: LIM domain- ( 409) 1838 353.1 6.6e-97
XP_016864301 (OMIM: 603450) PREDICTED: LIM domain- ( 408) 1821 349.9 5.9e-96
XP_011512207 (OMIM: 603450) PREDICTED: LIM domain- ( 298) 1639 315.9 7.7e-86
XP_016872358 (OMIM: 603451) PREDICTED: LIM domain- ( 242) 1597 308.0 1.5e-83
NP_001124306 (OMIM: 603450) LIM domain-binding pro ( 331) 1539 297.2 3.5e-80
NP_001291364 (OMIM: 603450) LIM domain-binding pro ( 313) 1526 294.8 1.8e-79
XP_016864306 (OMIM: 603450) PREDICTED: LIM domain- ( 330) 1522 294.1 3.1e-79
XP_005248258 (OMIM: 603450) PREDICTED: LIM domain- ( 330) 1522 294.1 3.1e-79
XP_016864309 (OMIM: 603450) PREDICTED: LIM domain- ( 311) 1514 292.6 8.4e-79
XP_005248259 (OMIM: 603450) PREDICTED: LIM domain- ( 329) 1510 291.8 1.5e-78
XP_016864308 (OMIM: 603450) PREDICTED: LIM domain- ( 312) 1509 291.6 1.6e-78
XP_016864310 (OMIM: 603450) PREDICTED: LIM domain- ( 310) 1497 289.4 7.6e-78
XP_006714041 (OMIM: 603450) PREDICTED: LIM domain- ( 369) 1422 275.4 1.4e-73
XP_006714042 (OMIM: 603450) PREDICTED: LIM domain- ( 369) 1422 275.4 1.4e-73
XP_016864311 (OMIM: 603450) PREDICTED: LIM domain- ( 249) 1416 274.2 2.3e-73
XP_006714045 (OMIM: 603450) PREDICTED: LIM domain- ( 351) 1409 273.0 7.4e-73
XP_006714043 (OMIM: 603450) PREDICTED: LIM domain- ( 368) 1405 272.3 1.3e-72
XP_006714046 (OMIM: 603450) PREDICTED: LIM domain- ( 349) 1397 270.8 3.5e-72
XP_006714044 (OMIM: 603450) PREDICTED: LIM domain- ( 367) 1393 270.0 6.1e-72
XP_016864304 (OMIM: 603450) PREDICTED: LIM domain- ( 350) 1392 269.8 6.7e-72
XP_016864305 (OMIM: 603450) PREDICTED: LIM domain- ( 348) 1380 267.6 3.1e-71
XP_016864303 (OMIM: 603450) PREDICTED: LIM domain- ( 366) 1376 266.8 5.5e-71


>>NP_003884 (OMIM: 603451) LIM domain-binding protein 1   (375 aa)
 initn: 2591 init1: 2591 opt: 2591  Z-score: 2621.0  bits: 493.6 E(85289): 3e-139
Smith-Waterman score: 2591; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375)

               10        20        30        40        50        60
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPS
              310       320       330       340       350       360

              370     
pF1KB7 SQESKSENPTSQASQ
       :::::::::::::::
NP_003 SQESKSENPTSQASQ
              370     

>>NP_001106878 (OMIM: 603451) LIM domain-binding protein  (411 aa)
 initn: 2591 init1: 2591 opt: 2591  Z-score: 2620.4  bits: 493.7 E(85289): 3.2e-139
Smith-Waterman score: 2591; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:37-411)

                                             10        20        30
pF1KB7                               MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
                                     ::::::::::::::::::::::::::::::
NP_001 CPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KB7 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KB7 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
        130       140       150       160       170       180      

              160       170       180       190       200       210
pF1KB7 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
        190       200       210       220       230       240      

              220       230       240       250       260       270
pF1KB7 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
        250       260       270       280       290       300      

              280       290       300       310       320       330
pF1KB7 MSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQF
        310       320       330       340       350       360      

              340       350       360       370     
pF1KB7 DAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ
       :::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ
        370       380       390       400       410 

>>NP_001308541 (OMIM: 603451) LIM domain-binding protein  (409 aa)
 initn: 2068 init1: 2068 opt: 2562  Z-score: 2591.2  bits: 488.3 E(85289): 1.4e-137
Smith-Waterman score: 2562; 99.5% identity (99.5% similar) in 375 aa overlap (1-375:37-409)

                                             10        20        30
pF1KB7                               MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
                                     ::::::::::::::::::::::::::::::
NP_001 CPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KB7 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KB7 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
        130       140       150       160       170       180      

              160       170       180       190       200       210
pF1KB7 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
        190       200       210       220       230       240      

              220       230       240       250       260       270
pF1KB7 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
        250       260       270       280       290       300      

              280       290       300       310       320       330
pF1KB7 MSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQF
       :::::::::::::::::::::::::::  :::::::::::::::::::::::::::::::
NP_001 MSSGGGNTNNSNSKKKSPASTFALSSQ--DVMVVGEPTLMGGEFGDEDERLITRLENTQF
        310       320       330         340       350       360    

              340       350       360       370     
pF1KB7 DAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ
       :::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ
          370       380       390       400         

>>XP_016872356 (OMIM: 603451) PREDICTED: LIM domain-bind  (339 aa)
 initn: 2083 init1: 2083 opt: 2083  Z-score: 2109.1  bits: 398.8 E(85289): 9.7e-111
Smith-Waterman score: 2083; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:37-335)

                                             10        20        30
pF1KB7                               MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
                                     ::::::::::::::::::::::::::::::
XP_016 CPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KB7 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KB7 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
        130       140       150       160       170       180      

              160       170       180       190       200       210
pF1KB7 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
        190       200       210       220       230       240      

              220       230       240       250       260       270
pF1KB7 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
        250       260       270       280       290       300      

              280       290       300       310       320       330
pF1KB7 MSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQF
       :::::::::::::::::::::::::::::                               
XP_016 MSSGGGNTNNSNSKKKSPASTFALSSQVPIWPA                           
        310       320       330                                    

>>XP_016872357 (OMIM: 603451) PREDICTED: LIM domain-bind  (337 aa)
 initn: 2122 init1: 2072 opt: 2072  Z-score: 2098.1  bits: 396.7 E(85289): 4e-110
Smith-Waterman score: 2072; 99.7% identity (100.0% similar) in 298 aa overlap (1-298:37-334)

                                             10        20        30
pF1KB7                               MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
                                     ::::::::::::::::::::::::::::::
XP_016 CPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KB7 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KB7 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
        130       140       150       160       170       180      

              160       170       180       190       200       210
pF1KB7 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
        190       200       210       220       230       240      

              220       230       240       250       260       270
pF1KB7 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
        250       260       270       280       290       300      

              280       290       300       310       320       330
pF1KB7 MSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQF
       :::::::::::::::::::::::::::.                                
XP_016 MSSGGGNTNNSNSKKKSPASTFALSSQIWPA                             
        310       320       330                                    

>>NP_001281 (OMIM: 603450) LIM domain-binding protein 2   (373 aa)
 initn: 1489 init1: 1468 opt: 1984  Z-score: 2008.7  bits: 380.3 E(85289): 3.8e-105
Smith-Waterman score: 1984; 77.1% identity (91.3% similar) in 367 aa overlap (10-375:8-373)

               10        20        30        40        50        60
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
                :.:   .  :   :::::  : .:::.:.:::::. ::. ::::::::.::
NP_001   MSSTPHDPFYSSPF-GPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATE
                 10         20        30        40        50       

               70        80        90       100       110       120
pF1KB7 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
       :::::: ::..::::::::::::::::::::: ..::::.:.:::.::: ::..:.. ..
NP_001 FFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSIT
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KB7 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
       .:::: .:::::::::::.::.:::: ::: :::.::::::::.:::.:::.::::::::
NP_001 VDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KB7 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
       :::::.:::::::::: ::.: ::::::::::::::::::::::::.:::::::::::::
NP_001 AQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQ
       180       190       200       210       220       230       

              250       260       270        280       290         
pF1KB7 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVP
       :::::::::::::::  .:::::: : .::  ::.:.:.:...::::. :....::::::
NP_001 KWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVP
       240       250       260       270       280       290       

     300       310       320       330       340       350         
pF1KB7 DVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPP
       ::::::::::::::::::::::::::::::.:::::.:::..:::::::: :::::::::
NP_001 DVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPP
       300       310       320       330       340       350       

     360       370     
pF1KB7 SSQESKSENPTSQASQ
       ..::.:::::  ::::
NP_001 ATQETKSENPPPQASQ
       360       370   

>>XP_005248254 (OMIM: 603450) PREDICTED: LIM domain-bind  (372 aa)
 initn: 1917 init1: 1917 opt: 1967  Z-score: 1991.5  bits: 377.2 E(85289): 3.4e-104
Smith-Waterman score: 1967; 76.8% identity (91.0% similar) in 367 aa overlap (10-375:8-372)

               10        20        30        40        50        60
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
                :.:   .  :   :::::  : .:::.:.:::::. ::. ::::::::.::
XP_005   MSSTPHDPFYSSPF-GPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATE
                 10         20        30        40        50       

               70        80        90       100       110       120
pF1KB7 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
       :::::: ::..::::::::::::::::::::: ..::::.:.:::.::: ::..:.. ..
XP_005 FFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSIT
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KB7 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
       .:::: .:::::::::::.::.:::: ::: :::.::::::::.:::.:::.::::::::
XP_005 VDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KB7 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
       :::::.:::::::::: ::.: ::::::::::::::::::::::::.:::::::::::::
XP_005 AQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQ
       180       190       200       210       220       230       

              250       260       270        280       290         
pF1KB7 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVP
       ::::::::: :::::  .:::::: : .::  ::.:.:.:...::::. :....::::::
XP_005 KWQRMVAPP-EPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVP
       240        250       260       270       280       290      

     300       310       320       330       340       350         
pF1KB7 DVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPP
       ::::::::::::::::::::::::::::::.:::::.:::..:::::::: :::::::::
XP_005 DVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPP
        300       310       320       330       340       350      

     360       370     
pF1KB7 SSQESKSENPTSQASQ
       ..::.:::::  ::::
XP_005 ATQETKSENPPPQASQ
        360       370  

>>NP_001291363 (OMIM: 603450) LIM domain-binding protein  (371 aa)
 initn: 1489 init1: 1468 opt: 1955  Z-score: 1979.4  bits: 374.9 E(85289): 1.6e-103
Smith-Waterman score: 1955; 76.6% identity (90.7% similar) in 367 aa overlap (10-375:8-371)

               10        20        30        40        50        60
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
                :.:   .  :   :::::  : .:::.:.:::::. ::. ::::::::.::
NP_001   MSSTPHDPFYSSPF-GPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATE
                 10         20        30        40        50       

               70        80        90       100       110       120
pF1KB7 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
       :::::: ::..::::::::::::::::::::: ..::::.:.:::.::: ::..:.. ..
NP_001 FFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSIT
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KB7 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
       .:::: .:::::::::::.::.:::: ::: :::.::::::::.:::.:::.::::::::
NP_001 VDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KB7 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
       :::::.:::::::::: ::.: ::::::::::::::::::::::::.:::::::::::::
NP_001 AQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQ
       180       190       200       210       220       230       

              250       260       270        280       290         
pF1KB7 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVP
       :::::::::::::::  .:::::: : .::  ::.:.:.:...::::. :....::::  
NP_001 KWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQ--
       240       250       260       270       280       290       

     300       310       320       330       340       350         
pF1KB7 DVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPP
       ::::::::::::::::::::::::::::::.:::::.:::..:::::::: :::::::::
NP_001 DVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPP
         300       310       320       330       340       350     

     360       370     
pF1KB7 SSQESKSENPTSQASQ
       ..::.:::::  ::::
NP_001 ATQETKSENPPPQASQ
         360       370 

>>XP_016864302 (OMIM: 603450) PREDICTED: LIM domain-bind  (370 aa)
 initn: 1440 init1: 1440 opt: 1938  Z-score: 1962.3  bits: 371.8 E(85289): 1.5e-102
Smith-Waterman score: 1938; 76.3% identity (90.5% similar) in 367 aa overlap (10-375:8-370)

               10        20        30        40        50        60
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
                :.:   .  :   :::::  : .:::.:.:::::. ::. ::::::::.::
XP_016   MSSTPHDPFYSSPF-GPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATE
                 10         20        30        40        50       

               70        80        90       100       110       120
pF1KB7 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
       :::::: ::..::::::::::::::::::::: ..::::.:.:::.::: ::..:.. ..
XP_016 FFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSIT
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KB7 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
       .:::: .:::::::::::.::.:::: ::: :::.::::::::.:::.:::.::::::::
XP_016 VDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KB7 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
       :::::.:::::::::: ::.: ::::::::::::::::::::::::.:::::::::::::
XP_016 AQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQ
       180       190       200       210       220       230       

              250       260       270        280       290         
pF1KB7 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVP
       ::::::::: :::::  .:::::: : .::  ::.:.:.:...::::. :....::::  
XP_016 KWQRMVAPP-EPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQ--
       240        250       260       270       280       290      

     300       310       320       330       340       350         
pF1KB7 DVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPP
       ::::::::::::::::::::::::::::::.:::::.:::..:::::::: :::::::::
XP_016 DVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPP
          300       310       320       330       340       350    

     360       370     
pF1KB7 SSQESKSENPTSQASQ
       ..::.:::::  ::::
XP_016 ATQETKSENPPPQASQ
          360       370

>>XP_006714038 (OMIM: 603450) PREDICTED: LIM domain-bind  (411 aa)
 initn: 1477 init1: 1352 opt: 1867  Z-score: 1890.0  bits: 358.5 E(85289): 1.5e-98
Smith-Waterman score: 1902; 70.1% identity (83.0% similar) in 405 aa overlap (10-375:8-411)

               10        20        30        40                    
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEE---------C--
                :.:   .  :   :::::  : .:::.:.:::::. ::.         :  
XP_006   MSSTPHDPFYSSPF-GPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDLYMASENQLCHI
                 10         20        30        40        50       

                                 50        60        70        80  
pF1KB7 ---------------------------DNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYT
                                  ::::::::.:::::::: ::..:::::::::::
XP_006 IGNYDDDDDDDDDTLILDSISKLNNDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYT
        60        70        80        90       100       110       

             90       100       110       120       130       140  
pF1KB7 IGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCV
       :::::::::: ..::::.:.:::.::: ::..:.. ...:::: .:::::::::::.::.
XP_006 IGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCT
       120       130       140       150       160       170       

            150       160       170       180       190       200  
pF1KB7 EGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNS
       :::: ::: :::.::::::::.:::.:::.:::::::::::::.:::::::::: ::.: 
XP_006 EGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNF
       180       190       200       210       220       230       

            210       220       230       240       250       260  
pF1KB7 TLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRK
       ::::::::::::::::::::::::.::::::::::::::::::::::::::::  .::::
XP_006 TLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTTKRRK
       240       250       260       270       280       290       

            270        280       290       300       310       320 
pF1KB7 RKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERL
       :: : .::  ::.:.:.:...::::. :....::::::::::::::::::::::::::::
XP_006 RKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDERL
       300       310       320       330       340       350       

             330       340       350       360       370     
pF1KB7 ITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ
       ::::::::.:::::.:::..:::::::: :::::::::..::.:::::  ::::
XP_006 ITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQETKSENPPPQASQ
       360       370       380       390       400       410 




375 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:31:40 2016 done: Fri Nov  4 12:31:42 2016
 Total Scan time:  8.340 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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