Result of FASTA (ccds) for pF1KB7630
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7630, 375 aa
  1>>>pF1KB7630 375 - 375 aa - 375 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9703+/-0.000728; mu= 14.5606+/- 0.044
 mean_var=87.8116+/-17.477, 0's: 0 Z-trim(111.1): 15  B-trim: 0 in 0/51
 Lambda= 0.136867
 statistics sampled from 12093 (12103) to 12093 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.372), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS7528.1 LDB1 gene_id:8861|Hs108|chr10           ( 375) 2591 521.1 6.2e-148
CCDS44472.1 LDB1 gene_id:8861|Hs108|chr10          ( 411) 2591 521.1 6.7e-148
CCDS3420.1 LDB2 gene_id:9079|Hs108|chr4            ( 373) 1984 401.3 7.4e-112
CCDS77903.1 LDB2 gene_id:9079|Hs108|chr4           ( 371) 1955 395.5 3.9e-110
CCDS47031.1 LDB2 gene_id:9079|Hs108|chr4           ( 331) 1539 313.4 1.9e-85
CCDS77902.1 LDB2 gene_id:9079|Hs108|chr4           ( 313) 1526 310.8 1.1e-84


>>CCDS7528.1 LDB1 gene_id:8861|Hs108|chr10                (375 aa)
 initn: 2591 init1: 2591 opt: 2591  Z-score: 2769.4  bits: 521.1 E(32554): 6.2e-148
Smith-Waterman score: 2591; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375)

               10        20        30        40        50        60
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPS
              310       320       330       340       350       360

              370     
pF1KB7 SQESKSENPTSQASQ
       :::::::::::::::
CCDS75 SQESKSENPTSQASQ
              370     

>>CCDS44472.1 LDB1 gene_id:8861|Hs108|chr10               (411 aa)
 initn: 2591 init1: 2591 opt: 2591  Z-score: 2768.8  bits: 521.1 E(32554): 6.7e-148
Smith-Waterman score: 2591; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:37-411)

                                             10        20        30
pF1KB7                               MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
                                     ::::::::::::::::::::::::::::::
CCDS44 CPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQ
         10        20        30        40        50        60      

               40        50        60        70        80        90
pF1KB7 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPR
         70        80        90       100       110       120      

              100       110       120       130       140       150
pF1KB7 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEF
        130       140       150       160       170       180      

              160       170       180       190       200       210
pF1KB7 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLC
        190       200       210       220       230       240      

              220       230       240       250       260       270
pF1KB7 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGST
        250       260       270       280       290       300      

              280       290       300       310       320       330
pF1KB7 MSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQF
        310       320       330       340       350       360      

              340       350       360       370     
pF1KB7 DAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ
        370       380       390       400       410 

>>CCDS3420.1 LDB2 gene_id:9079|Hs108|chr4                 (373 aa)
 initn: 1489 init1: 1468 opt: 1984  Z-score: 2121.7  bits: 401.3 E(32554): 7.4e-112
Smith-Waterman score: 1984; 77.1% identity (91.3% similar) in 367 aa overlap (10-375:8-373)

               10        20        30        40        50        60
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
                :.:   .  :   :::::  : .:::.:.:::::. ::. ::::::::.::
CCDS34   MSSTPHDPFYSSPF-GPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATE
                 10         20        30        40        50       

               70        80        90       100       110       120
pF1KB7 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
       :::::: ::..::::::::::::::::::::: ..::::.:.:::.::: ::..:.. ..
CCDS34 FFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSIT
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KB7 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
       .:::: .:::::::::::.::.:::: ::: :::.::::::::.:::.:::.::::::::
CCDS34 VDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KB7 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
       :::::.:::::::::: ::.: ::::::::::::::::::::::::.:::::::::::::
CCDS34 AQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQ
       180       190       200       210       220       230       

              250       260       270        280       290         
pF1KB7 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVP
       :::::::::::::::  .:::::: : .::  ::.:.:.:...::::. :....::::::
CCDS34 KWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVP
       240       250       260       270       280       290       

     300       310       320       330       340       350         
pF1KB7 DVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPP
       ::::::::::::::::::::::::::::::.:::::.:::..:::::::: :::::::::
CCDS34 DVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPP
       300       310       320       330       340       350       

     360       370     
pF1KB7 SSQESKSENPTSQASQ
       ..::.:::::  ::::
CCDS34 ATQETKSENPPPQASQ
       360       370   

>>CCDS77903.1 LDB2 gene_id:9079|Hs108|chr4                (371 aa)
 initn: 1489 init1: 1468 opt: 1955  Z-score: 2090.8  bits: 395.5 E(32554): 3.9e-110
Smith-Waterman score: 1955; 76.6% identity (90.7% similar) in 367 aa overlap (10-375:8-371)

               10        20        30        40        50        60
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
                :.:   .  :   :::::  : .:::.:.:::::. ::. ::::::::.::
CCDS77   MSSTPHDPFYSSPF-GPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATE
                 10         20        30        40        50       

               70        80        90       100       110       120
pF1KB7 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
       :::::: ::..::::::::::::::::::::: ..::::.:.:::.::: ::..:.. ..
CCDS77 FFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSIT
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KB7 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
       .:::: .:::::::::::.::.:::: ::: :::.::::::::.:::.:::.::::::::
CCDS77 VDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KB7 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
       :::::.:::::::::: ::.: ::::::::::::::::::::::::.:::::::::::::
CCDS77 AQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQ
       180       190       200       210       220       230       

              250       260       270        280       290         
pF1KB7 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVP
       :::::::::::::::  .:::::: : .::  ::.:.:.:...::::. :....::::  
CCDS77 KWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQ--
       240       250       260       270       280       290       

     300       310       320       330       340       350         
pF1KB7 DVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPP
       ::::::::::::::::::::::::::::::.:::::.:::..:::::::: :::::::::
CCDS77 DVMVVGEPTLMGGEFGDEDERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPP
         300       310       320       330       340       350     

     360       370     
pF1KB7 SSQESKSENPTSQASQ
       ..::.:::::  ::::
CCDS77 ATQETKSENPPPQASQ
         360       370 

>>CCDS47031.1 LDB2 gene_id:9079|Hs108|chr4                (331 aa)
 initn: 1468 init1: 1468 opt: 1539  Z-score: 1647.5  bits: 313.4 E(32554): 1.9e-85
Smith-Waterman score: 1539; 71.8% identity (88.3% similar) in 308 aa overlap (10-316:8-314)

               10        20        30        40        50        60
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
                :.:   .  :   :::::  : .:::.:.:::::. ::. ::::::::.::
CCDS47   MSSTPHDPFYSSPF-GPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATE
                 10         20        30        40        50       

               70        80        90       100       110       120
pF1KB7 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
       :::::: ::..::::::::::::::::::::: ..::::.:.:::.::: ::..:.. ..
CCDS47 FFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSIT
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KB7 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
       .:::: .:::::::::::.::.:::: ::: :::.::::::::.:::.:::.::::::::
CCDS47 VDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KB7 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
       :::::.:::::::::: ::.: ::::::::::::::::::::::::.:::::::::::::
CCDS47 AQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQ
       180       190       200       210       220       230       

              250       260       270        280       290         
pF1KB7 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVP
       :::::::::::::::  .:::::: : .::  ::.:.:.:...::::. :....::::::
CCDS47 KWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVP
       240       250       260       270       280       290       

     300       310       320       330       340       350         
pF1KB7 DVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPP
        . .. . .:  :. ::                                           
CCDS47 GLGAIPNCSLNPGRDGDLCHSTAVTPSGQFKEKH                          
       300       310       320       330                           

>>CCDS77902.1 LDB2 gene_id:9079|Hs108|chr4                (313 aa)
 initn: 1468 init1: 1468 opt: 1526  Z-score: 1634.0  bits: 310.8 E(32554): 1.1e-84
Smith-Waterman score: 1526; 72.9% identity (89.0% similar) in 299 aa overlap (10-307:8-305)

               10        20        30        40        50        60
pF1KB7 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
                :.:   .  :   :::::  : .:::.:.:::::. ::. ::::::::.::
CCDS77   MSSTPHDPFYSSPF-GPFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATE
                 10         20        30        40        50       

               70        80        90       100       110       120
pF1KB7 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
       :::::: ::..::::::::::::::::::::: ..::::.:.:::.::: ::..:.. ..
CCDS77 FFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSIT
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KB7 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
       .:::: .:::::::::::.::.:::: ::: :::.::::::::.:::.:::.::::::::
CCDS77 VDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMH
       120       130       140       150       160       170       

              190       200       210       220       230       240
pF1KB7 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
       :::::.:::::::::: ::.: ::::::::::::::::::::::::.:::::::::::::
CCDS77 AQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQ
       180       190       200       210       220       230       

              250       260       270        280       290         
pF1KB7 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVP
       :::::::::::::::  .:::::: : .::  ::.:.:.:...::::. :....::::::
CCDS77 KWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVP
       240       250       260       270       280       290       

     300       310       320       330       340       350         
pF1KB7 DVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPP
        . ..  :                                                    
CCDS77 IASIARSPVSGCALRT                                            
       300       310                                               




375 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:31:40 2016 done: Fri Nov  4 12:31:40 2016
 Total Scan time:  2.640 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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