Result of FASTA (ccds) for pF1KB8355
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8355, 651 aa
  1>>>pF1KB8355 651 - 651 aa - 651 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.0822+/-0.00104; mu= -18.3461+/- 0.063
 mean_var=496.0282+/-104.011, 0's: 0 Z-trim(117.1): 16  B-trim: 418 in 1/54
 Lambda= 0.057587
 statistics sampled from 17740 (17755) to 17740 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.545), width:  16
 Scan time:  4.350

The best scores are:                                      opt bits E(32554)
CCDS4421.1 DBN1 gene_id:1627|Hs108|chr5            ( 651) 4374 377.7 2.7e-104
CCDS4420.1 DBN1 gene_id:1627|Hs108|chr5            ( 649) 4149 359.0 1.1e-98
CCDS47579.1 DBNL gene_id:28988|Hs108|chr7          ( 439)  629 66.5 8.9e-11


>>CCDS4421.1 DBN1 gene_id:1627|Hs108|chr5                 (651 aa)
 initn: 4374 init1: 4374 opt: 4374  Z-score: 1985.9  bits: 377.7 E(32554): 2.7e-104
Smith-Waterman score: 4374; 99.7% identity (99.8% similar) in 651 aa overlap (1-651:1-651)

               10        20        30        40        50        60
pF1KB8 MAGHPWHGTAALASSQAWRDGRERQALVSCRALYTYEDGSDDLKLAASGEGGLQELSGHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAGHPWHGTAALASSQAWRDGRERQALVSCRALYTYEDGSDDLKLAASGEGGLQELSGHF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ENQKVMYGFCSVKDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQGVDVIVNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ENQKVMYGFCSVKDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQGVDVIVNA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SSVEDIDAGAIGQRLSNGLARLSSPVLHRLRLREDENAEPVGTTYQKTDAAVEMKRINRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SSVEDIDAGAIGQRLSNGLARLSSPVLHRLRLREDENAEPVGTTYQKTDAAVEMKRINRE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 QFWEQAKKEEELRKEEERKKALDERLRFEQERMEQERQEQEERERRYREREQQIEEHRRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QFWEQAKKEEELRKEEERKKALDERLRFEQERMEQERQEQEERERRYREREQQIEEHRRK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 QQTLEAEEAKRRLKEQSIFGDHRDEEEETHMKKSESEVEEAAAIIAQRPDNPREFFKQQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QQTLEAEEAKRRLKEQSIFGDHRDEEEETHMKKSESEVEEAAAIIAQRPDNPREFFKQQE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 RVASASAGSCDVPSPFNHRPGSHLDSHRRMAPTPIPTRSPSDSSTASTPVAEQIERALDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RVASASAGSCDVPSPFNHRPGSHLDSHRRMAPTPIPTRSPSDSSTASTPVAEQIERALDE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 VTSSQPPPLPPPPPPAQETQEPSPILDSEETRAAAPQAWAGPMEEPPQAQAPPRGPGSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VTSSQPPPLPPPPPPAQETQEPSPILDSEETRAAAPQAWAGPMEEPPQAQAPPRGPGSPA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 EDLMFMESAEQAVLAAPVEPATADATEVHDAADTIETDTATADTTVANNVPPAATSLIDL
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS44 EDLMFMESAEQAVLAAPVEPATADATEIHDAADTIETDTATADTTVANNVPPAATSLIDL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 WPGNGEGASTLQGEPRAPTPPSGTEVTLAEVPLLDEVAPEPLLPAGEGCATLLNFDELPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WPGNGEGASTLQGEPRAPTPPSGTEVTLAEVPLLDEVAPEPLLPAGEGCATLLNFDELPE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 PPATFCDPEEVEGEPLAAPQTPTLPSALEELEQEQEPEPHLLTNGETTQKEGTQASEGYF
       :::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PPATFCDPEEVEGESLAAPQTPTLPSALEELEQEQEPEPHLLTNGETTQKEGTQASEGYF
              550       560       570       580       590       600

              610       620       630       640       650 
pF1KB8 SQSQEEEFAQSEELCAKAPPPVFYNKPPEIDITCWDADPVPEEEEGFEGGD
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SQSQEEEFAQSEELCAKAPPPVFYNKPPEIDITCWDADPVPEEEEGFEGGD
              610       620       630       640       650 

>>CCDS4420.1 DBN1 gene_id:1627|Hs108|chr5                 (649 aa)
 initn: 4149 init1: 4149 opt: 4149  Z-score: 1884.9  bits: 359.0 E(32554): 1.1e-98
Smith-Waterman score: 4149; 99.7% identity (99.8% similar) in 620 aa overlap (32-651:30-649)

              10        20        30        40        50        60 
pF1KB8 AGHPWHGTAALASSQAWRDGRERQALVSCRALYTYEDGSDDLKLAASGEGGLQELSGHFE
                                     ::::::::::::::::::::::::::::::
CCDS44  MAGVSFSGHRLELLAAYEEVIREESAADWALYTYEDGSDDLKLAASGEGGLQELSGHFE
                10        20        30        40        50         

              70        80        90       100       110       120 
pF1KB8 NQKVMYGFCSVKDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQGVDVIVNAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NQKVMYGFCSVKDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQGVDVIVNAS
      60        70        80        90       100       110         

             130       140       150       160       170       180 
pF1KB8 SVEDIDAGAIGQRLSNGLARLSSPVLHRLRLREDENAEPVGTTYQKTDAAVEMKRINREQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SVEDIDAGAIGQRLSNGLARLSSPVLHRLRLREDENAEPVGTTYQKTDAAVEMKRINREQ
     120       130       140       150       160       170         

             190       200       210       220       230       240 
pF1KB8 FWEQAKKEEELRKEEERKKALDERLRFEQERMEQERQEQEERERRYREREQQIEEHRRKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FWEQAKKEEELRKEEERKKALDERLRFEQERMEQERQEQEERERRYREREQQIEEHRRKQ
     180       190       200       210       220       230         

             250       260       270       280       290       300 
pF1KB8 QTLEAEEAKRRLKEQSIFGDHRDEEEETHMKKSESEVEEAAAIIAQRPDNPREFFKQQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QTLEAEEAKRRLKEQSIFGDHRDEEEETHMKKSESEVEEAAAIIAQRPDNPREFFKQQER
     240       250       260       270       280       290         

             310       320       330       340       350       360 
pF1KB8 VASASAGSCDVPSPFNHRPGSHLDSHRRMAPTPIPTRSPSDSSTASTPVAEQIERALDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VASASAGSCDVPSPFNHRPGSHLDSHRRMAPTPIPTRSPSDSSTASTPVAEQIERALDEV
     300       310       320       330       340       350         

             370       380       390       400       410       420 
pF1KB8 TSSQPPPLPPPPPPAQETQEPSPILDSEETRAAAPQAWAGPMEEPPQAQAPPRGPGSPAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TSSQPPPLPPPPPPAQETQEPSPILDSEETRAAAPQAWAGPMEEPPQAQAPPRGPGSPAE
     360       370       380       390       400       410         

             430       440       450       460       470       480 
pF1KB8 DLMFMESAEQAVLAAPVEPATADATEVHDAADTIETDTATADTTVANNVPPAATSLIDLW
       ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS44 DLMFMESAEQAVLAAPVEPATADATEIHDAADTIETDTATADTTVANNVPPAATSLIDLW
     420       430       440       450       460       470         

             490       500       510       520       530       540 
pF1KB8 PGNGEGASTLQGEPRAPTPPSGTEVTLAEVPLLDEVAPEPLLPAGEGCATLLNFDELPEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PGNGEGASTLQGEPRAPTPPSGTEVTLAEVPLLDEVAPEPLLPAGEGCATLLNFDELPEP
     480       490       500       510       520       530         

             550       560       570       580       590       600 
pF1KB8 PATFCDPEEVEGEPLAAPQTPTLPSALEELEQEQEPEPHLLTNGETTQKEGTQASEGYFS
       ::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PATFCDPEEVEGESLAAPQTPTLPSALEELEQEQEPEPHLLTNGETTQKEGTQASEGYFS
     540       550       560       570       580       590         

             610       620       630       640       650 
pF1KB8 QSQEEEFAQSEELCAKAPPPVFYNKPPEIDITCWDADPVPEEEEGFEGGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QSQEEEFAQSEELCAKAPPPVFYNKPPEIDITCWDADPVPEEEEGFEGGD
     600       610       620       630       640         

>>CCDS47579.1 DBNL gene_id:28988|Hs108|chr7               (439 aa)
 initn: 695 init1: 595 opt: 629  Z-score: 306.9  bits: 66.5 E(32554): 8.9e-11
Smith-Waterman score: 686; 34.7% identity (64.0% similar) in 369 aa overlap (32-387:29-370)

              10        20        30        40        50        60 
pF1KB8 AGHPWHGTAALASSQAWRDGRERQALVSCRALYTYEDGSDDLKLAASGEGGLQELSGHFE
                                     ::.::: .:.:...:..:::::.:.  ...
CCDS47   MAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEEMVEELN
                 10        20        30        40        50        

              70        80        90       100       110       120 
pF1KB8 NQKVMYGFCSVKDSQAALPKYVLINWVGEDVPDARKCACASHVAKVAEFFQGVDVIVNAS
       . ::::.:: ::: ...:::.:::::.:: : :.:: ::::::. .: :..:. : .:: 
CCDS47 SGKVMYAFCRVKDPNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINAR
       60        70        80        90       100       110        

             130       140       150         160       170         
pF1KB8 SVEDIDAGAIGQRLSNGLARLSSPVLHRLRLR-EDENAE-PVGTTYQKTDAAVEMKRINR
       . ::..   : .....  :  ..  .:.   : .: . . :::..::::.:. :.::...
CCDS47 AEEDVEPECIMEKVAK--ASGANYSFHKESGRFQDVGPQAPVGSVYQKTNAVSEIKRVGK
      120       130         140       150       160       170      

     180       190       200       210       220       230         
pF1KB8 EQFWEQAKKEEELRKEEERKKALDERLRFEQERMEQERQEQEERERRYREREQQIEEHRR
       ..:: .:.:::: :. ::...: . . ..:::: :.: .:  .::.::.:.  .   . :
CCDS47 DSFWAKAEKEEENRRLEEKRRAEEAQRQLEQERRERELREAARREQRYQEQGGEASPQSR
        180       190       200       210       220       230      

     240       250       260       270       280       290         
pF1KB8 KQQTLEAEEAKRRLKEQSIFGDHRDEEEETHMKKSESEVEEAAAIIAQRPDNPREFFKQQ
         .           ..: . . .:.:.  :  . .:: :            .:::.:::.
CCDS47 TWE-----------QQQEVVSRNRNEQGSTCASLQESAV------------HPREIFKQK
                   240       250       260                   270   

     300       310           320       330           340       350 
pF1KB8 ERVASASAGSCDVP----SPFNHRPGSHLDSHRRMAPTPIPTRS----PSDSSTASTPVA
       ::. :... :   :    ::: ..  .. ..:    :.   .:     :..  . :::  
CCDS47 ERAMSTTSISSPQPGKLRSPFLQKQLTQPETHFGREPAAAISRPRADLPAEEPAPSTPPC
           280       290       300       310       320       330   

             360          370       380       390       400        
pF1KB8 EQIERALDEVTSSQPPP---LPPPPPPAQETQEPSPILDSEETRAAAPQAWAGPMEEPPQ
         . .: .:..  .::    .   :: .:.    :  .:                     
CCDS47 --LVQAEEEAVYEEPPEQETFYEQPPLVQQQGAGSEHIDHHIQGQGLSGQGLCARALYDY
             340       350       360       370       380       390 

      410       420       430       440       450       460        
pF1KB8 AQAPPRGPGSPAEDLMFMESAEQAVLAAPVEPATADATEVHDAADTIETDTATADTTVAN
                                                                   
CCDS47 QAADDTEISFDPENLITGIEVIDEGWWRGYGPDGHFGMFPANYVELIE            
             400       410       420       430                     




651 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:02:54 2016 done: Fri Nov  4 12:02:55 2016
 Total Scan time:  4.350 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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