Result of FASTA (omim) for pF1KB8346
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8346, 127 aa
  1>>>pF1KB8346 127 - 127 aa - 127 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6527+/-0.00028; mu= 9.8713+/- 0.018
 mean_var=82.8738+/-16.810, 0's: 0 Z-trim(119.3): 10  B-trim: 1697 in 1/51
 Lambda= 0.140885
 statistics sampled from 33156 (33166) to 33156 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.389), width:  16
 Scan time:  4.490

The best scores are:                                      opt bits E(85289)
NP_001028284 (OMIM: 605604) polyadenylate-binding  ( 127)  863 184.0 5.6e-47
XP_016865012 (OMIM: 605604) PREDICTED: polyadenyla ( 127)  863 184.0 5.6e-47
NP_057564 (OMIM: 605604) polyadenylate-binding pro ( 127)  863 184.0 5.6e-47
XP_016865011 (OMIM: 605604) PREDICTED: polyadenyla ( 127)  863 184.0 5.6e-47
XP_011541730 (OMIM: 605604) PREDICTED: polyadenyla ( 127)  863 184.0 5.6e-47
NP_065192 (OMIM: 611018) polyadenylate-binding pro ( 123)  531 116.5 1.1e-26
XP_011531145 (OMIM: 611018) PREDICTED: polyadenyla ( 123)  531 116.5 1.1e-26
XP_005264368 (OMIM: 611018) PREDICTED: polyadenyla ( 123)  531 116.5 1.1e-26
XP_005264367 (OMIM: 611018) PREDICTED: polyadenyla ( 123)  531 116.5 1.1e-26
XP_011531144 (OMIM: 611018) PREDICTED: polyadenyla ( 144)  531 116.6 1.3e-26


>>NP_001028284 (OMIM: 605604) polyadenylate-binding prot  (127 aa)
 initn: 863 init1: 863 opt: 863  Z-score: 964.4  bits: 184.0 E(85289): 5.6e-47
Smith-Waterman score: 863; 99.2% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB8 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFVP
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_001 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFVP
               70        80        90       100       110       120

              
pF1KB8 GVKYGNI
       :::::::
NP_001 GVKYGNI
              

>>XP_016865012 (OMIM: 605604) PREDICTED: polyadenylate-b  (127 aa)
 initn: 863 init1: 863 opt: 863  Z-score: 964.4  bits: 184.0 E(85289): 5.6e-47
Smith-Waterman score: 863; 99.2% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB8 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFVP
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
XP_016 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFVP
               70        80        90       100       110       120

              
pF1KB8 GVKYGNI
       :::::::
XP_016 GVKYGNI
              

>>NP_057564 (OMIM: 605604) polyadenylate-binding protein  (127 aa)
 initn: 863 init1: 863 opt: 863  Z-score: 964.4  bits: 184.0 E(85289): 5.6e-47
Smith-Waterman score: 863; 99.2% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB8 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFVP
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
NP_057 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFVP
               70        80        90       100       110       120

              
pF1KB8 GVKYGNI
       :::::::
NP_057 GVKYGNI
              

>>XP_016865011 (OMIM: 605604) PREDICTED: polyadenylate-b  (127 aa)
 initn: 863 init1: 863 opt: 863  Z-score: 964.4  bits: 184.0 E(85289): 5.6e-47
Smith-Waterman score: 863; 99.2% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB8 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFVP
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
XP_016 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFVP
               70        80        90       100       110       120

              
pF1KB8 GVKYGNI
       :::::::
XP_016 GVKYGNI
              

>>XP_011541730 (OMIM: 605604) PREDICTED: polyadenylate-b  (127 aa)
 initn: 863 init1: 863 opt: 863  Z-score: 964.4  bits: 184.0 E(85289): 5.6e-47
Smith-Waterman score: 863; 99.2% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB8 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFVP
       :::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::
XP_011 FQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFVP
               70        80        90       100       110       120

              
pF1KB8 GVKYGNI
       :::::::
XP_011 GVKYGNI
              

>>NP_065192 (OMIM: 611018) polyadenylate-binding protein  (123 aa)
 initn: 287 init1: 268 opt: 531  Z-score: 599.9  bits: 116.5 E(85289): 1.1e-26
Smith-Waterman score: 531; 60.8% identity (85.6% similar) in 125 aa overlap (1-124:1-123)

               10         20        30        40        50         
pF1KB8 MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIER
       :.  . ..::::. . ::  ..::. : .:::::::::::::.::::.:::: :..:..:
NP_065 MNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWMENEEDFNRQVEEELQEQDFLDR
               10        20         30        40        50         

      60        70        80        90       100       110         
pF1KB8 CFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFV
       ::::::.::.. .::::.:::::.: :.:.:.: : .::: . ::.. ::::::.::::.
NP_065 CFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFI
      60        70         80        90       100       110        

     120       
pF1KB8 PGVKYGNI
       :: ::   
NP_065 PGEKY   
      120      

>>XP_011531145 (OMIM: 611018) PREDICTED: polyadenylate-b  (123 aa)
 initn: 287 init1: 268 opt: 531  Z-score: 599.9  bits: 116.5 E(85289): 1.1e-26
Smith-Waterman score: 531; 60.8% identity (85.6% similar) in 125 aa overlap (1-124:1-123)

               10         20        30        40        50         
pF1KB8 MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIER
       :.  . ..::::. . ::  ..::. : .:::::::::::::.::::.:::: :..:..:
XP_011 MNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWMENEEDFNRQVEEELQEQDFLDR
               10        20         30        40        50         

      60        70        80        90       100       110         
pF1KB8 CFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFV
       ::::::.::.. .::::.:::::.: :.:.:.: : .::: . ::.. ::::::.::::.
XP_011 CFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFI
      60        70         80        90       100       110        

     120       
pF1KB8 PGVKYGNI
       :: ::   
XP_011 PGEKY   
      120      

>>XP_005264368 (OMIM: 611018) PREDICTED: polyadenylate-b  (123 aa)
 initn: 287 init1: 268 opt: 531  Z-score: 599.9  bits: 116.5 E(85289): 1.1e-26
Smith-Waterman score: 531; 60.8% identity (85.6% similar) in 125 aa overlap (1-124:1-123)

               10         20        30        40        50         
pF1KB8 MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIER
       :.  . ..::::. . ::  ..::. : .:::::::::::::.::::.:::: :..:..:
XP_005 MNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWMENEEDFNRQVEEELQEQDFLDR
               10        20         30        40        50         

      60        70        80        90       100       110         
pF1KB8 CFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFV
       ::::::.::.. .::::.:::::.: :.:.:.: : .::: . ::.. ::::::.::::.
XP_005 CFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFI
      60        70         80        90       100       110        

     120       
pF1KB8 PGVKYGNI
       :: ::   
XP_005 PGEKY   
      120      

>>XP_005264367 (OMIM: 611018) PREDICTED: polyadenylate-b  (123 aa)
 initn: 287 init1: 268 opt: 531  Z-score: 599.9  bits: 116.5 E(85289): 1.1e-26
Smith-Waterman score: 531; 60.8% identity (85.6% similar) in 125 aa overlap (1-124:1-123)

               10         20        30        40        50         
pF1KB8 MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIER
       :.  . ..::::. . ::  ..::. : .:::::::::::::.::::.:::: :..:..:
XP_005 MNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWMENEEDFNRQVEEELQEQDFLDR
               10        20         30        40        50         

      60        70        80        90       100       110         
pF1KB8 CFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISEGSSLEDLVVKSNLNPNAKEFV
       ::::::.::.. .::::.:::::.: :.:.:.: : .::: . ::.. ::::::.::::.
XP_005 CFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSEGHDSEDILSKSNLNPDAKEFI
      60        70         80        90       100       110        

     120       
pF1KB8 PGVKYGNI
       :: ::   
XP_005 PGEKY   
      120      

>>XP_011531144 (OMIM: 611018) PREDICTED: polyadenylate-b  (144 aa)
 initn: 290 init1: 268 opt: 531  Z-score: 599.0  bits: 116.6 E(85289): 1.3e-26
Smith-Waterman score: 531; 60.8% identity (85.6% similar) in 125 aa overlap (1-124:22-144)

                                    10         20        30        
pF1KB8                      MKDPSRSSTSPSIIN-EDVIINGHSHEDDNPFAEYMWME
                            :.  . ..::::. . ::  ..::. : .::::::::::
XP_011 MPHLPGRRSPLLLCLAVRSIIMNGSNMANTSPSVKSKEDQGLSGHD-EKENPFAEYMWME
               10        20        30        40         50         

       40        50        60        70        80        90        
pF1KB8 NEEEFNRQIEEELWEEEFIERCFQEMLEEEEEHEWFIPARDLPQTMDQIQDQFNDLVISE
       :::.::::.:::: :..:..:::::::.::.. .::::.:::::.: :.:.:.: : .::
XP_011 NEEDFNRQVEEELQEQDFLDRCFQEMLDEEDQ-DWFIPSRDLPQAMGQLQQQLNGLSVSE
      60        70        80        90        100       110        

      100       110       120       
pF1KB8 GSSLEDLVVKSNLNPNAKEFVPGVKYGNI
       : . ::.. ::::::.::::.:: ::   
XP_011 GHDSEDILSKSNLNPDAKEFIPGEKY   
      120       130       140       




127 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 11:58:19 2016 done: Fri Nov  4 11:58:20 2016
 Total Scan time:  4.490 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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