GENSCAN 1.0	Date run:  4-Nov-116	Time: 11:43:45

Sequence gi568815596r:64988496_65204806 : 216311 bp : 44.45% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1149   1675  527  2  2  104   92   758 0.824  72.13
 1.02 Intr +  12953  12995   43  2  1   91  103    16 0.753   1.64
 1.03 Intr +  15458  15520   63  1  0   56   98    67 0.868   3.41
 1.04 Intr +  22102  22268  167  0  2  101   89   158 0.985  15.96
 1.05 Intr +  27945  28178  234  0  0  108  109   122 0.949  13.10
 1.06 Intr +  29576  29770  195  2  0   74   84   286 0.996  25.33
 1.07 Intr +  30050  30184  135  2  0   71   75   154 0.999  12.08
 1.08 Term +  32417  32651  235  2  1   95   45   350 0.556  27.19
 1.09 PlyA +  39013  39018    6                               1.05

 2.00 Prom +  41668  41707   40                              -4.46
 2.01 Init +  42287  42386  100  1  1   42   62    65 0.438  -0.28
 2.02 Intr +  42451  42764  314  2  2   53  111   157 0.485  10.40
 2.03 Term +  55051  55233  183  0  0   74   49   126 0.535   4.84
 2.04 PlyA +  55548  55553    6                               1.05

 3.00 Prom +  65287  65326   40                              -2.66
 3.01 Init +  80950  81306  357  0  0   64   96   141 0.849   9.61
 3.02 Intr +  82959  84485 1527  2  0   90   90   159 0.639   6.05
 3.03 Intr +  85787  85909  123  1  0   99   57    67 0.688   5.48
 3.04 Intr +  89373  89469   97  2  1   26   94   104 0.876   4.38
 3.05 Term +  94041  94210  170  1  2   22   37   140 0.434   0.34
 3.06 PlyA +  94349  94354    6                              -0.45

 4.07 PlyA -  94536  94531    6                               1.05
 4.06 Term -  97375  97350   26  2  2   87   44    39 0.377  -2.21
 4.05 Intr - 100195 100015  181  1  1   88   49   146 0.816  10.14
 4.04 Intr - 100575 100444  132  0  0   56   95    97 0.941   8.04
 4.03 Intr - 102583 102488   96  1  0   29  111    59 0.850   2.51
 4.02 Intr - 109571 109476   96  2  0  103   92    50 0.950   7.11
 4.01 Init - 122594 122562   33  2  0  110   73   -13 0.341  -0.68
 4.00 Prom - 125401 125362   40                              -4.86

 5.00 Prom + 131794 131833   40                              -2.46
 5.01 Init + 140501 140537   37  1  1   69   89    -6 0.551  -2.96
 5.02 Intr + 141302 141493  192  0  0  102   56   134 0.632  11.06
 5.03 Term + 141564 141646   83  1  2   82   41    67 0.356  -0.74
 5.04 PlyA + 142690 142695    6                               1.05

 6.00 Prom + 146604 146643   40                              -7.56
 6.01 Init + 163347 163403   57  2  0   96   94   112 0.994  13.91
 6.02 Term + 167949 167972   24  2  0  110   37    67 0.975   2.02
 6.03 PlyA + 168656 168661    6                               1.05

 7.04 PlyA - 168688 168683    6                               1.05
 7.03 Term - 188290 188223   68  2  2   79   42    59 0.363  -1.50
 7.02 Intr - 189230 189063  168  0  0   75   81    69 0.269   4.82
 7.01 Intr - 211543 211460   84  2  0   66   94    32 0.021   1.39

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:64988496_65204806|GENSCAN_predicted_peptide_1|532_aa
MEKSNETNGYLDSAQAGPAAGPGAPGTAAGRARRCAGFLRRQALVLLTVSGVLAGAGLGA
ALRGLSLSRTQVTYLAFPGEMLLRMLRMIILPLVVCSLVSGAASLDASCLGRLGGIAVAY
FGLTTLSASALAVALAFIIKPGSGAQTLQSSDLGLEDSGPPPVPKETVDSFLDLARNLFP
SNLVVAAFRTYATDYKVVTQNSSSGNVTHEKIPIGTEIEGMNILGLVLFALVLGVALKKL
GSEGEDLIRFFNSLNEATMVLVSWIMWYVPVGIMFLVGSKIVEMKDIIVLVTSLGKYIFA
SILGHVIHGGIVLPLIYFVFTRKNPFRFLLGLLAPFATAFATCSSSATLPSMMKCIEENN
GVDKRISRFILPIGATVNMDGAAIFQCVAAVFIAQLNNVELNAGQIFTILVTATASSVGA
AGVPAGGVLTIAIILEAIGLPTHDLPLILAVDWIVDRTTTVVNVEGDALGAGILHHLNQK
ATKKGEQELAEVKVEAIPNCKSEEETSPLVTHQNPAGPVASAPELESKESVL

>gi568815596r:64988496_65204806|GENSCAN_predicted_CDS_1|1599_bp
atggagaagagcaacgagaccaacggctaccttgacagcgctcaggcggggcctgcggcc
gggcccggagctccggggaccgcggcgggacgcgcacggcgttgcgcgggcttcctgcgg
cgccaagcgctggtgctgctcaccgtgtccggggtgctggcgggcgcgggcctgggcgcg
gcgttgcgcgggctcagcctgagccgcacgcaggtcacctacctggccttccccggcgag
atgctgctccgcatgctgcgcatgatcatcctgccgctggtggtctgcagcctggtgtcg
ggcgccgcctcgctcgatgccagctgcctcgggcgtctgggcggcatcgctgtcgcctac
tttggcctcaccacactgagtgcctcggcgctcgccgtggccttggcgttcatcatcaag
ccaggatccggtgcgcagacccttcagtccagcgacctggggctggaggactcggggcct
cctcctgtccccaaagagacggtggactctttcctcgacctggccagaaacctgtttccc
tccaatcttgtggttgcagctttccgtacgtatgcaaccgattataaagtcgtgacccag
aacagcagctctggaaatgtaacccatgaaaagatccccataggcactgagatagaaggg
atgaacattttaggattggtcctgtttgctctggtgttaggagtggccttaaagaaacta
ggctccgaaggagaagacctcatccgtttcttcaattccctcaacgaggcgacgatggtg
ctggtgtcctggattatgtggtacgtacctgtgggcatcatgttccttgttggaagcaag
atcgtggaaatgaaagacatcatcgtgctggtgaccagcctggggaaatacatcttcgca
tctatattgggccatgttattcatggaggaattgttctgccacttatttattttgttttc
acacgaaaaaacccattcagattcctcctgggcctcctcgccccatttgcgacagcattt
gctacctgctccagctcagcgacccttccctctatgatgaagtgcattgaagagaacaat
ggtgtggacaagaggatcagcaggtttattctccccatcggggccaccgtgaacatggac
ggagcagccatcttccagtgtgtggccgcggtgttcattgcgcaactcaacaacgtagag
ctcaacgcaggacagattttcaccattctagtgactgccacagcgtccagtgttggagca
gcaggcgtgccagctggaggggtcctcaccattgccattatcctggaggccattgggctg
cctactcatgacctgcctctgatcctggctgtggactggattgtggaccggaccaccacg
gtggtgaatgtggaaggggatgccctgggtgcaggcattctccaccacctgaatcagaag
gcaacaaagaaaggcgagcaggaacttgctgaggtgaaagtggaagccatccccaactgc
aagtctgaggaggagacatcgcccctggtgacacaccagaaccccgctggccccgtggcc
agtgccccagaactggaatccaaggagtcggttctgtga

>gi568815596r:64988496_65204806|GENSCAN_predicted_peptide_2|198_aa
MQTFTTCISYSEYSCMLLANASSHGTLYCKLRVGICLLMVPAVKNQASGSARGATKVRRK
CQAGCQNEHLGELDDGTDGKNQLNIRENGGRGQNCEQELEESVAEKDLSQTSRDLEKMMS
KHIFLKPMLSISDLVNFLMQVSKVLVKTAEGIVLQQLPLAFPALHFHAYGNLFPVCSFKH
YIYMIDHPIFISIPDFLT

>gi568815596r:64988496_65204806|GENSCAN_predicted_CDS_2|597_bp
atgcagacttttacaacatgcatcagctacagtgagtattcttgcatgcttttggccaat
gcaagctctcatggcacgctgtactgtaagctccgggtcggcatttgtttgttgatggta
ccagctgtcaaaaaccaagcaagtggcagtgctagaggtgccacaaaagtgcgaaggaag
tgtcaggctggatgtcaaaatgaacaccttggagaactggatgatggaacagacggtaaa
aatcagctaaacatcagagaaaatggaggaagaggtcaaaactgtgaacaggaactagaa
gaaagtgtagcagaaaaagacttgtcacaaacttcgagagatttggagaaaatgatgtca
aaacacatcttcctcaagcccatgctgagtatctctgatttggttaatttcttgatgcaa
gtttccaaagttctggtgaaaacggctgaaggaatagtgttacagcaactgcccttggct
tttccagctttacacttccatgcctatggaaatctcttccctgtctgtagctttaagcat
tacatctatatgatcgaccatcccatcttcatctccatccctgacttcctaacttga

>gi568815596r:64988496_65204806|GENSCAN_predicted_peptide_3|757_aa
MALGEEKAEAEASEDTKAQSYGRGSCRERELDIPGPMSGEQPPRLEAEGGLISPVWGAEG
IPAPTCWIGTDPGGPSRAHQPQASDANREPVAERSEPALSGLPPATMGSGDLLLSGESQV
EKTKLSSSEEFPQTLSLPRTTTICSGHDADTEDDPSLADLPQALDLSQQPHSSGLSCLSQ
WKSVLSPGSAAQPSSCSISASSTGSSLQGHQERAEPRGGSLAKVSSSLEPVVPQEPSSVV
GLGPRPQWSPQPVFSGGDASGLGRRRLSFQAEYWACVLPDSLPPSPDRHSPLWNPNKEYE
DLLDYTYPLRPGPQLPKHLDSRVPADPVLQDSGVDLDSFSVSPASTLKSPTNVSPNCPPA
EATALPFSGPREPSLKQWPSRVPQKQGGMGLASWSQLASTPRAPGSRDARWERREPALRG
AKDRLTIGKHLDMGSPQLRTRDRGWPSPRPEREKRTSQSARRPTCTESRWKSEEEVESDD
EYLALPARLTQVSSLVSYLGSISTLVTLPTGDIKGQSPLEVSDSDGPASFPSSSSQSQLP
PGAALQGSGDPEGQNPCFLRSFVRAHDSAGEGSLGSSQALGVSSGLLKTRPSLPARLDRW
PFSDPDVEGQLPRKGGEQGKESLVQCVKTFCCQLEELICWLYNVADVTDHGTAARSNLTS
LKSSLQLYRQFKKDIDEHQSLTESVLQKGEILLQCLLENTPVLEDVLGRIAKQSGELESH
ADRLYDSILASLDMLAGCTLIPDKKPMAAMEHPCEGV

>gi568815596r:64988496_65204806|GENSCAN_predicted_CDS_3|2274_bp
atggccctgggtgaagaaaaggcagaagcggaagcatctgaagacacaaaggcccagtcc
tatgggagagggagctgcagggagcgggagctggacatcccagggcccatgagtggggag
cagcccccacgcctggaagctgagggagggctcatctcccctgtatggggggcagaaggg
atacctgcccctacttgctggattgggactgaccctggcggcccctctagagcccaccag
ccacaggccagtgatgccaacagagagcccgtagctgagaggtctgagcctgcactcagt
ggcctgcctcctgccaccatggggtctggagaccttctgctctccggggaaagccaggtg
gagaagaccaagctttcttcctccgaggagttccctcagactctgagccttcccagaaca
acaactatttgctcaggacatgatgctgataccgaagatgatccatccctagcagatttg
ccccaggcactggacctcagccagcagcctcacagctcaggtctctcttgcctgtcacag
tggaagtccgtgctgagcccaggttccgcagctcagccttccagctgcagcatctctgct
tcctccacaggcagcagtctccagggtcaccaggagagggcggagcctcgtggtggttct
ctggccaaggtctcctcctccctggagccggtcgtcccccaggaaccttcctctgtggtg
gggctaggacctcggccccagtggtcaccacagcctgtgttctctgggggtgatgcttct
gggctaggcaggagacgcctctccttccaggctgagtactgggcctgtgtgctgccagat
tccctgcctccatcacccgaccgccactcccctctctggaacccaaataaagagtatgaa
gatctgcttgactatacttacccactgaggcccgggcctcagctcccaaagcaccttgat
agccgtgtgccagctgaccctgtcctgcaggactccggggtagacctggatagcttctct
gtctctccagcaagcaccctcaaatcacctactaatgtctcccccaactgcccaccagca
gaggccactgccctgccattttctgggcccagagagccaagccttaagcagtggccctcc
agagtaccccagaaacagggtggcatgggcttggcatcttggagccaacttgcatctacc
cccagagccccaggcagtagggatgctcgttgggagcgcagagagccagccctgaggggt
gcgaaggaccggctgactataggcaagcaccttgatatgggctctccccagctaaggaca
cgggacagagggtggccctcgcccaggccagagagggagaagaggaccagccagagtgcc
cggcgccctacctgcacagagtctaggtggaaatcagaagaggaagtggaaagtgatgac
gagtatcttgccctccccgctcggctgacacaggtttctagcctggtttcgtatctagga
tccatttctaccttggttaccctgcccactggggatatcaaagggcagagccccttggaa
gtgtcagacagtgatgggccagcttccttcccttcaagctccagccaaagccagcttccc
cctggagctgccctccaaggatctggggatcctgagggccagaatccctgtttcctgcgc
tccttcgtccgtgcccacgactccgcaggggaaggcagtctggggagcagccaggccctc
ggggtctcctctggactgctgaaaacacgcccctccttgccagctaggttggaccggtgg
ccattctcagacccagatgttgaagggcagcttcccaggaaaggaggagaacagggaaaa
gaatcactggtgcaatgtgtgaagacattttgctgtcagctggaagagctgatctgctgg
ctgtataatgttgcagatgttactgaccacgggactgcagccaggtccaatcttacaagt
ctcaagtcttctctgcagctttaccggcaatttaagaaagatatagatgaacatcagtct
ctgacggagagtgtcttacagaagggggagattcttcttcagtgcctgttggagaacacc
ccagttttagaggatgtccttgggaggatcgcaaagcagtctggtgagctggagagccac
gcagatcgcctgtatgactctatcttggcctctctggacatgctggctggctgcaccctt
atccctgacaaaaagcccatggcggcaatggagcacccatgtgaaggggtttaa

>gi568815596r:64988496_65204806|GENSCAN_predicted_peptide_4|187_aa
MPGQYFEGYTLDDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY
RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE
FADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSE
MLLAASY

>gi568815596r:64988496_65204806|GENSCAN_predicted_CDS_4|564_bp
atgcctggccaatattttgagggatatactttggatgatacatatacagaaagctacatc
agcacaattggtgtggatttcaaaataagaactatagagttagacgggaaaacaatcaag
cttcaaatatgggacacagcaggccaggaaagatttcgaacaatcacctccagttattac
agaggagcccatggcatcatagttgtgtatgatgtgacagatcaggagtccttcaataat
gttaaacagtggctgcaggaaatagatcgttatgccagtgaaaatgtcaacaaattgttg
gtagggaacaaatgtgatctgaccacaaagaaagtagtagactacacaacagcgaaggaa
tttgctgattcccttggaattccgtttttggaaaccagtgctaagaatgcaacgaatgta
gaacagtctttcatgacgatggcagctgagattaaaaagcgaatgggtcccggagcaaca
gctggtggtgctgagaagtccaatgttaaaattcagagcactccagtcaagcagtcagaa
atgctgctggcagcatcttactag

>gi568815596r:64988496_65204806|GENSCAN_predicted_peptide_5|103_aa
MEPHSLSASIQAADAPTSAPTLLDPFKIPQAGPRTQPTGALLNSLFGIHAGHVTAAAAAA
TAALAAAAAALTLRATEHNQQPPPLSYRFHPKWPPANQEIGKP

>gi568815596r:64988496_65204806|GENSCAN_predicted_CDS_5|312_bp
atggaacctcattccctatctgcaagcatccaagcagccgatgccccgacttctgcccca
accctcctcgacccctttaagatcccccaagctggcccacggacccagccgaccggtgct
ctcctgaactcactattcgggattcatgctggacatgtcactgcagctgccgccgccgcc
accgccgcccttgctgccgcagccgccgccctgactctccgcgccacggaacacaatcag
cagccgccgccactcagctatcgcttccacccaaaatggccgccggcgaaccaggaaata
gggaagccttag

>gi568815596r:64988496_65204806|GENSCAN_predicted_peptide_6|26_aa
MRPQTATVDEEDPNLEKTQIVDEIYA

>gi568815596r:64988496_65204806|GENSCAN_predicted_CDS_6|81_bp
atgaggccacagacagcaactgtggatgaagaggatccaaatctggagaagacgcagatt
gtggacgagatctatgcatga

>gi568815596r:64988496_65204806|GENSCAN_predicted_peptide_7|106_aa
XPKALQSAAGKSSQACPFLQGSKLPPTPDCGRLMSMGGRLSGGRRQLDVGLQVLFGMNSL
GAMGTMDGRVMAAGGRQAPGQKKAVVCIPRSSWMQDKNSGPTEWQD

>gi568815596r:64988496_65204806|GENSCAN_predicted_CDS_7|321_bp
ngaccaaaggctctacaatcagcagctggcaaatccagccaggcttgtcctttccttcag
ggcagcaagctccccccaaccccagactgtgggcgcctaatgagcatgggagggaggctg
agtgggggccgaaggcagcttgatgtgggcctgcaggtgctctttggcatgaacagcctg
ggtgccatgggcaccatggatggcagagtgatggcagcaggaggcagacaggctcctggg
cagaaaaaggcagttgtctgcatacctcgttcttcctggatgcaggacaagaactcagga
cccactgaatggcaggactaa