FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8317, 486 aa 1>>>pF1KB8317 486 - 486 aa - 486 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.2936+/-0.0009; mu= -6.2987+/- 0.055 mean_var=349.3111+/-69.594, 0's: 0 Z-trim(117.2): 31 B-trim: 65 in 1/53 Lambda= 0.068623 statistics sampled from 17918 (17947) to 17918 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.551), width: 16 Scan time: 3.520 The best scores are: opt bits E(32554) CCDS14741.1 MECP2 gene_id:4204|Hs108|chrX ( 486) 3234 333.4 3.3e-91 CCDS48193.1 MECP2 gene_id:4204|Hs108|chrX ( 498) 3177 327.8 1.7e-89 >>CCDS14741.1 MECP2 gene_id:4204|Hs108|chrX (486 aa) initn: 3234 init1: 3234 opt: 3234 Z-score: 1751.0 bits: 333.4 E(32554): 3.3e-91 Smith-Waterman score: 3234; 100.0% identity (100.0% similar) in 486 aa overlap (1-486:1-486) 10 20 30 40 50 60 pF1KB8 MVAGMLGLREEKSEDQDLQGLKDKPLKFKKVKKDKKEEKEGKHEPVQPSAHHSAEPAEAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MVAGMLGLREEKSEDQDLQGLKDKPLKFKKVKKDKKEEKEGKHEPVQPSAHHSAEPAEAG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 KAETSEGSGSAPAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 KAETSEGSGSAPAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKLKQRKSGRSAGKY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 DVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQKPPKKPKSPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 DVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRREQKPPKKPKSPK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 APGTGRGRGRPKGSGTTRPKAATSEGVQVKRVLEKSPGKLLVKMPFQTSPGGKAEGGGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 APGTGRGRGRPKGSGTTRPKAATSEGVQVKRVLEKSPGKLLVKMPFQTSPGGKAEGGGAT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 TSTQVMVIKRPGRKRKAEADPQAIPKKRGRKPGSVVAAAAAEAKKKAVKESSIRSVQETV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 TSTQVMVIKRPGRKRKAEADPQAIPKKRGRKPGSVVAAAAAEAKKKAVKESSIRSVQETV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 LPIKKRKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRKSKESSPKGRSSSASS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 LPIKKRKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRKSKESSPKGRSSSASS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB8 PPKKEHHHHHHHSESPKAPVPLLPPLPPPPPEPESSEDPTSPPEPQDLSSSVCKEEKMPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 PPKKEHHHHHHHSESPKAPVPLLPPLPPPPPEPESSEDPTSPPEPQDLSSSVCKEEKMPR 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB8 GGSLESDGCPKEPAKTQPAVATAATAAEKYKHRGEGERKDIVSSSMPRPNREEPVDSRTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 GGSLESDGCPKEPAKTQPAVATAATAAEKYKHRGEGERKDIVSSSMPRPNREEPVDSRTP 430 440 450 460 470 480 pF1KB8 VTERVS :::::: CCDS14 VTERVS >>CCDS48193.1 MECP2 gene_id:4204|Hs108|chrX (498 aa) initn: 3177 init1: 3177 opt: 3177 Z-score: 1720.3 bits: 327.8 E(32554): 1.7e-89 Smith-Waterman score: 3177; 100.0% identity (100.0% similar) in 477 aa overlap (10-486:22-498) 10 20 30 40 pF1KB8 MVAGMLGLREEKSEDQDLQGLKDKPLKFKKVKKDKKEEKEGKHEPVQP ::::::::::::::::::::::::::::::::::::::: CCDS48 MAAAAAAAPSGGGGGGEEERLEEKSEDQDLQGLKDKPLKFKKVKKDKKEEKEGKHEPVQP 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB8 SAHHSAEPAEAGKAETSEGSGSAPAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 SAHHSAEPAEAGKAETSEGSGSAPAVPEASASPKQRRSIIRDRGPMYDDPTLPEGWTRKL 70 80 90 100 110 120 110 120 130 140 150 160 pF1KB8 KQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 KQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSRR 130 140 150 160 170 180 170 180 190 200 210 220 pF1KB8 EQKPPKKPKSPKAPGTGRGRGRPKGSGTTRPKAATSEGVQVKRVLEKSPGKLLVKMPFQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 EQKPPKKPKSPKAPGTGRGRGRPKGSGTTRPKAATSEGVQVKRVLEKSPGKLLVKMPFQT 190 200 210 220 230 240 230 240 250 260 270 280 pF1KB8 SPGGKAEGGGATTSTQVMVIKRPGRKRKAEADPQAIPKKRGRKPGSVVAAAAAEAKKKAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 SPGGKAEGGGATTSTQVMVIKRPGRKRKAEADPQAIPKKRGRKPGSVVAAAAAEAKKKAV 250 260 270 280 290 300 290 300 310 320 330 340 pF1KB8 KESSIRSVQETVLPIKKRKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRKSKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 KESSIRSVQETVLPIKKRKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRKSKE 310 320 330 340 350 360 350 360 370 380 390 400 pF1KB8 SSPKGRSSSASSPPKKEHHHHHHHSESPKAPVPLLPPLPPPPPEPESSEDPTSPPEPQDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 SSPKGRSSSASSPPKKEHHHHHHHSESPKAPVPLLPPLPPPPPEPESSEDPTSPPEPQDL 370 380 390 400 410 420 410 420 430 440 450 460 pF1KB8 SSSVCKEEKMPRGGSLESDGCPKEPAKTQPAVATAATAAEKYKHRGEGERKDIVSSSMPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS48 SSSVCKEEKMPRGGSLESDGCPKEPAKTQPAVATAATAAEKYKHRGEGERKDIVSSSMPR 430 440 450 460 470 480 470 480 pF1KB8 PNREEPVDSRTPVTERVS :::::::::::::::::: CCDS48 PNREEPVDSRTPVTERVS 490 486 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:41:29 2016 done: Fri Nov 4 11:41:30 2016 Total Scan time: 3.520 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]