FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8315, 254 aa 1>>>pF1KB8315 254 - 254 aa - 254 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3997+/-0.000315; mu= 10.0804+/- 0.020 mean_var=101.5258+/-20.569, 0's: 0 Z-trim(118.8): 8 B-trim: 537 in 1/52 Lambda= 0.127288 statistics sampled from 32071 (32079) to 32071 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.376), width: 16 Scan time: 6.750 The best scores are: opt bits E(85289) NP_000108 (OMIM: 300384,310300) emerin [Homo sapie ( 254) 1690 320.2 2.2e-87 XP_005269189 (OMIM: 188380,613740) PREDICTED: thym ( 382) 220 50.4 5.7e-06 >>NP_000108 (OMIM: 300384,310300) emerin [Homo sapiens] (254 aa) initn: 1690 init1: 1690 opt: 1690 Z-score: 1689.7 bits: 320.2 E(85289): 2.2e-87 Smith-Waterman score: 1690; 100.0% identity (100.0% similar) in 254 aa overlap (1-254:1-254) 10 20 30 40 50 60 pF1KB8 MDNYADLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQRRRLSPPSSSAASSYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MDNYADLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEYETQRRRLSPPSSSAASSYS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 FSDLNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTYGEPESAGPSRAVRQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 FSDLNSTRGDADMYDLPKKEDALLYQSKGYNDDYYEESYFTTRTYGEPESAGPSRAVRQS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 VTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 VTSFPDADAFHHQVHDDDLLSSSEEECKDRERPMYGRDSAYQSITHYRPVSASRSSLDLS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 YYPTSSSTSFMSSSSSSSSWLTRRAIRPENRAPGAGLGQDRQVPLWGQLLLFLVFVIVLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 YYPTSSSTSFMSSSSSSSSWLTRRAIRPENRAPGAGLGQDRQVPLWGQLLLFLVFVIVLF 190 200 210 220 230 240 250 pF1KB8 FIYHFMQAEEGNPF :::::::::::::: NP_000 FIYHFMQAEEGNPF 250 >>XP_005269189 (OMIM: 188380,613740) PREDICTED: thymopoi (382 aa) initn: 225 init1: 120 opt: 220 Z-score: 228.2 bits: 50.4 E(85289): 5.7e-06 Smith-Waterman score: 228; 24.6% identity (55.4% similar) in 276 aa overlap (3-254:111-370) 10 20 30 pF1KB8 MDNYADLSDTELTTLLRRYNIPHGPVVGSTRR . ..:.. .: : .:.. ::.::.::. XP_005 AAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDLLDQLVKYGVNPGPIVGTTRK 90 100 110 120 130 140 40 50 60 70 80 pF1KB8 LYEKKIFEYETQ--RRRLSPPSSSAASSYSFSDLNSTRGDADMYDLPKKEDALLYQS--- :::::... . : . : : : . .:: . :.. .:.: :. ..::. . . XP_005 LYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGS-NDSDRYS-DNEEDSKIELKLEK 150 160 170 180 190 90 100 110 120 130 pF1KB8 ----KGY-------NDDYYEESYFTTRTYGEPESAGPSRAVRQSVTSFPDAD--AFHHQV :: .. :.. ..:. :. . :.: .: : : : .. . XP_005 REPLKGRAKTPVTLKQRRVEHNQVVNRVTGNFKHASPI----LPITEFSDIPRRAPKKPL 200 210 220 230 240 250 140 150 160 170 180 pF1KB8 HDDDLLSSSEEECKDRE--RPMYGRDSAYQ---SITHYRPVS-ASRSSLDLSYYPTSSST .. ..::. .:. . :. ... : . ::.. :. :.:: XP_005 TRAEVGEKTEERRVERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELS-------- 260 270 280 290 300 190 200 210 220 230 240 pF1KB8 SFMSSSSSSSSWLTRRAIRPENRAPGAGLGQDRQVPLWGQLLLFLVFVIVLFFIYHFMQA .: : ::... . . : . . . :..:.: ..:::.: .. ::..:. :.. XP_005 DFRMEESFSSKYVPKYV--PLADVKSEKTKKGRSIPVWIKILLFVVVAVFLFLVYQAMET 310 320 330 340 350 360 250 pF1KB8 EEGNPF .. ::: XP_005 NQVNPFSNFLHVDPRKSN 370 380 254 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:40:53 2016 done: Fri Nov 4 11:40:54 2016 Total Scan time: 6.750 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]