GENSCAN 1.0	Date run:  4-Nov-116	Time: 11:02:00

Sequence gi568815593r:140145977_140400584 : 254608 bp : 44.95% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 Intr -    508    363  146  1  2   50   80   152 0.181   9.68
 1.03 Intr -   6703   6581  123  1  0   74   85    46 0.444   3.68
 1.02 Intr -  29808  29574  235  2  1   68   76    88 0.200   3.29
 1.01 Init -  37819  37737   83  1  2   54  115    40 0.676   3.74
 1.00 Prom -  41578  41539   40                              -3.86

 2.00 Prom +  44942  44981   40                              -4.26
 2.01 Init +  45458  45467   10  1  1   91   98     5 0.802   2.33
 2.02 Intr +  48470  48676  207  0  0  114   89   132 0.953  14.95
 2.03 Term +  93113  93276  164  0  2   85   54    87 0.129   3.10
 2.04 PlyA +  95456  95461    6                               1.05

 3.14 PlyA -  97994  97989    6                               1.05
 3.13 Term - 100081  99998   84  1  0   95   50   135 0.873   8.05
 3.12 Intr - 135557 135473   85  1  1  109  100    59 0.227   9.02
 3.11 Intr - 154606 154440  167  1  2   43  101   140 0.739   9.56
 3.10 Intr - 157135 157065   71  2  2   40   93    83 0.092   2.90
 3.09 Intr - 157387 157214  174  2  0   40   65    98 0.023   2.61
 3.08 Intr - 173943 173909   35  2  2  102  121    -5 0.086   2.07
 3.07 Intr - 179028 178999   30  2  0  130   75     4 0.071   0.55
 3.06 Intr - 190051 189896  156  0  0   58   95    93 0.938   6.13
 3.05 Intr - 193961 193825  137  2  2   91   77    59 0.369   4.47
 3.04 Intr - 196107 196095   13  2  1   99   59    26 0.347  -4.42
 3.03 Intr - 196836 196659  178  1  1   68  103   199 0.999  18.38
 3.02 Intr - 200108 199935  174  0  0   83   90   225 0.996  22.11
 3.01 Init - 200352 200307   46  0  1  100  110   114 0.632  14.46
 3.00 Prom - 201657 201618   40                              -2.06

 4.03 PlyA - 203363 203358    6                               1.05
 4.02 Term - 208396 208240  157  0  1   60   52   171 0.802   8.11
 4.01 Init - 208794 208775   20  0  2   49   69    14 0.213  -4.91
 4.00 Prom - 213881 213842   40                              -3.36

 5.00 Prom + 214179 214218   40                              -3.26
 5.01 Init + 214267 214490  224  0  2   61  111   155 0.564  13.13
 5.02 Intr + 214836 214996  161  0  2  105   57   141 0.849  12.33
 5.03 Intr + 215832 215887   56  1  2   93   72    14 0.826  -1.00
 5.04 Intr + 216041 216198  158  1  2   57   94    48 0.881   1.11
 5.05 Intr + 216469 216556   88  1  1  100  105    18 0.969   4.67
 5.06 Intr + 216936 217090  155  2  2   66   77   104 0.946   5.97
 5.07 Intr + 217463 217579  117  2  0  112   94    37 0.909   6.28
 5.08 Intr + 217806 217926  121  0  1    4   94   140 0.729   6.70
 5.09 Intr + 218078 218211  134  1  2   78   91    84 0.999   7.14
 5.10 Intr + 218387 218649  263  2  2  113   90   318 0.995  31.63
 5.11 Intr + 219544 219602   59  2  2   90   77   -12 0.829  -3.50
 5.12 Intr + 219858 220046  189  2  0  108   89    63 0.965   8.18
 5.13 Intr + 220175 220288  114  1  0   79  100   104 0.991  11.34
 5.14 Intr + 221444 221605  162  1  0   75  110   175 0.998  18.57
 5.15 Intr + 221744 221922  179  1  2   60   94    64 0.919   2.92
 5.16 Intr + 222611 222683   73  2  1  146   77    45 0.997   8.61
 5.17 Intr + 225119 225187   69  1  0   91   99    64 0.992   7.18
 5.18 Intr + 225475 225648  174  0  0  118  103    78 0.999  12.44
 5.19 Intr + 226266 226421  156  2  0   86   50   143 0.551  10.51

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 129505 129628  124  0  1   66   87    51 0.884   3.13
S.002 Term + 130021 130106   86  2  2   34   45   193 0.997   7.42
S.003 Init - 157097 157065   33  2  0  100   93    65 0.833   8.07


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593r:140145977_140400584|GENSCAN_predicted_peptide_1|196_aa
MYGPLQKLEDCLDAVFPSAFSLWKGPHSYFQSLVTSAPLPPAGLATCPLPPAGPARNRQS
SASEIAAQGEEIQKPPADVPRDGVWRAPLRARRLLVRREPQRRGDPVGPPLCPTKLPQKL
ERKKLWVSRQRSGESLRIWKSPLLPGLPHPEPEDAENGLRTARGCFGGVRGYSEKQSCVS
LVPSLNSGVLQSQCPS

>gi568815593r:140145977_140400584|GENSCAN_predicted_CDS_1|588_bp
atgtatggtcctctgcaaaagctagaggactgcctggatgcagtattcccctctgcattc
agcttatggaagggtccccacagttacttccagtcactagttacttccgctccgctccca
cccgcgggactcgcgacctgccccctgcccccggctggcccagctcggaataggcagagc
agcgcctcagaaatcgcagcccaaggcgaagaaatccagaagcctcccgcggacgtcccc
cgggacggggtgtggcgagccccgctccgagcccgccgactcctcgtgagacgagaaccg
cagcgacgcggagaccctgtggggccacccctctgccccaccaagttgccccagaagctg
gagaggaaaaaactctgggtctccagacaacggtctggagaatccttgaggatctggaag
tccccgctgctgcctggcctgcctcacccagagcccgaggacgcagagaacggcctgcgc
accgcccgcggctgcttcggaggggtgagggggtacagcgagaaacagagctgcgtctcc
ctcgtcccctccttaaattccggcgtcctccagtcacagtgtcccagn

>gi568815593r:140145977_140400584|GENSCAN_predicted_peptide_2|126_aa
MMRGALYRSPMNQENPPPYPGPGPTAPYPPYPPQPMGPGPMGGPYPPPQGYPYQGYPQYG
WQGGPQEPPKTTALLGWDWYRHLQKQEGPNKAQLPHQGTRFIIYKVPAMQMKVSDARMGL
RIGAFT

>gi568815593r:140145977_140400584|GENSCAN_predicted_CDS_2|381_bp
atgatgaggggtgcactttacaggtccccgatgaaccaagagaaccctccaccatatcca
ggccctggtccaacggccccatacccaccttatccaccacaaccaatgggtccaggacct
atggggggaccctacccacctcctcaagggtacccctaccaaggatacccacagtacggc
tggcagggtggacctcaggagcctcctaaaaccacagctctcttgggttgggactggtac
agacacttgcaaaaacaagaaggacctaataaggctcaattaccacatcaaggcactcga
ttcatcatttacaaagtcccagccatgcagatgaaggtttcagatgccagaatggggctg
agaattggagccttcacctga

>gi568815593r:140145977_140400584|GENSCAN_predicted_peptide_3|449_aa
MKLLPSVVLKLFLAAVLSALVTGESLERLRRGLAAGTSNPDPPTVSTDQLLPLGGGRDRK
VRDLQEADLDLLRVTLSSKPQALATPNKEEHGKRKKKGKGLGKKRDPCLRKYKDFCIHGE
CKYVKELRAPSCIKDEEGRKQQEDRNPGLGECDICARSSGDLCGSCLTPDPGTTSQGVSR
LLCCHPGYHGERCHGLSLPVENRLYTYDHTTILAVVAVVLSSVCLLVIVGLLMFSILAIT
NQQGMCLHRYRTDRSEAHIKLAGKLLKATWEICALGYVWKIRRSKPDLTGQVVKTRNPKP
KYFRSQFSEKDKKPVQLPLRRRLQCTKMAAPVDLELKKAFTELQAKVIDTQQKVKLADIQ
IEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFILQSKEAIHSQLLEKQKIAEEKIKE
LEQKKSYLERSVKEAEDNIREMLMARRAQ

>gi568815593r:140145977_140400584|GENSCAN_predicted_CDS_3|1350_bp
atgaagctgctgccgtcggtggtgctgaagctctttctggctgcagttctctcggcactg
gtgactggcgagagcctggagcggcttcggagagggctagctgctggaaccagcaacccg
gaccctcccactgtatccacggaccagctgctacccctaggaggcggccgggaccggaaa
gtccgtgacttgcaagaggcagatctggaccttttgagagtcactttatcctccaagcca
caagcactggccacaccaaacaaggaggagcacgggaaaagaaagaagaaaggcaagggg
ctagggaagaagagggacccatgtcttcggaaatacaaggacttctgcatccatggagaa
tgcaaatatgtgaaggagctccgggctccctcctgcatcaaggacgaggagggcagaaag
cagcaagaagacagaaatcctggtttgggggaatgtgacatctgtgcacgttcatctggg
gatctttgtggctcttgtttgactccagacccaggaaccactagccagggtgtgtccagg
ctgctgtgctgccacccgggttaccatggagagaggtgtcatgggctgagcctcccagtg
gaaaatcgcttatatacctatgaccacacaaccatcctggccgtggtggctgtggtgctg
tcatctgtctgtctgctggtcatcgtggggcttctcatgtttagcatcttggctattact
aaccaacagggcatgtgtttacacagatacaggacagacagaagtgaagcacatattaag
ctagctggcaaactgcttaaagccacatgggaaatctgcgcgttgggctatgtctggaag
atacggaggagcaagccagacctgaccggtcaggtagtgaagacacggaatccgaaaccc
aaatatttcaggagtcaattctcagagaaagataagaagcccgtccaactcccactgcgc
aggcgcttacagtgcaccaagatggccgcccccgtggatctagagctgaagaaggccttc
acagagcttcaagccaaagttattgacactcaacagaaggtgaagctcgcagacatacag
attgaacagctaaacagaacgaaaaagcatgcacatcttacagatacagagatcatgact
ttggtagatgagactaacatgtatgaaggtgtaggaagaatgtttattcttcagtccaag
gaagcaattcacagtcagctgttagagaagcagaaaatagcagaagaaaaaattaaagaa
ctagaacagaaaaagtcctacctggagcgaagcgttaaggaagctgaggacaacatccgg
gagatgctgatggcacgaagggcccagtag

>gi568815593r:140145977_140400584|GENSCAN_predicted_peptide_4|58_aa
MRITNPRPPRSNQDLEWALIAGICFDSSQCPHSFTKVKTVEGKEDEVSETSSLQDETT

>gi568815593r:140145977_140400584|GENSCAN_predicted_CDS_4|177_bp
atgagaattaccaatccaaggccaccaagatccaaccaagacttggagtgggctctgata
gctggaatctgcttcgactcctcacagtgcccacactccttcacaaaggtgaagaccgtt
gaggggaaagaggatgaggtgtcagagacatctagtctgcaggatgagaccacctga

>gi568815593r:140145977_140400584|GENSCAN_predicted_peptide_5|884_aa
MKLPGQEGFEASSAPRNIPSGELDSNPDPGTGPSPDGPSDTESKELGVPKDPLLFIQLNE
LLGWPQALEWRETGRWVLFEEKLEVAAGRWSAPHVPTLALPSLQKLRSLLAEGLVLLDCP
AQSLLELVGSTHPRKASDNEEAPLREQCQNPLRQKLPPGAEAGTVLAGELGFLAQPLGAF
VRLRNPVVLGSLTEVSLPSRFFCLLLGPCMLGKGYHEMGRAAAVLLSDPQFQWSVRRASN
LHDLLAALDAFLEEVTVLPPGRWDPTARIPPPKCLPSQHKRLPSQQREIRGPAVPRLTSA
EDRHRHGPHAHSPELQRTGSDFLDALHLQCFSAVLYIYLATVTNAITFGGLLGDATDGAQ
GVLESFLGTAVAGAAFCLMAGQPLTILSSTGPVLVFERLLFSFSRDYSLDYLPFRLWVGI
WVATFCLVLVATEASVLVRYFTRFTEEGFCALISLIFIYDAVGKMLNLTHTYPIQKPGSS
AYGCLCQYPGPGGNESQWIRTRPKDRDDIVSMDLGLINASLLPPPECTRQGGHPRGPGCH
TVPDIAFFSLLLFLTSFFFAMALKCVKTSRFFPSVVRKGLSDFSSVLAILLGCGLDAFLG
LATPKLMVPREFKPTLPGRGWLVSPFGANPWWWSVAAALPALLLSILIFMDQQITAVILN
RMEYRLQKGAGFHLDLFCVAVLMLLTSALGLPWYVSATVISLAHMDSLRRESRACAPGER
PNFLGIREQRLTGLVVFILTGASIFLAPVLKFIPMPVLYGIFLYMGVAALSSIQFTNRVK
LLLMPAKHQPDLLLLRHVPLTRVHLFTAIQLACLGLLWIIKSTPAAIIFPLMLLGLVGVR
KALERVFSPQELLWLDELMPEEERSIPEKGLEPEHSFSGSDSED

>gi568815593r:140145977_140400584|GENSCAN_predicted_CDS_5|2652_bp
atgaagctgccaggccaggaagggtttgaagcctccagtgctcctagaaatattccttca
ggggagctggacagcaaccctgaccctggcaccggccccagccctgatggcccctcagac
acagagagcaaggaactgggagtacccaaagaccctctgctcttcattcagctgaatgag
ctgctgggctggccccaggcgctggagtggagagagacaggcaggtgggtactgtttgag
gagaagttggaggtggctgcaggccggtggagtgccccccacgtgcccaccctggcactg
cccagcctccagaagctccgcagcctgctggccgagggccttgtactgctggactgccca
gctcagagcctcctggagctcgtgggctctactcatccaagaaaggcttctgacaatgag
gaagcccccctgagggaacagtgtcagaaccccctgagacagaagctacctccaggagct
gaggcagggactgtgctggcaggggagctgggcttcctggcacagccactgggagccttt
gttcgactgcggaaccctgtggtactggggtcccttactgaggtgtccctcccaagcagg
tttttctgccttctcctgggcccctgtatgctgggaaagggctaccatgagatgggacgg
gcagcagctgtcctcctcagtgacccgcaattccagtggtcagttcgtcgggccagcaac
cttcatgaccttctggcagccctggatgcattcctagaggaggtgacagtgcttccccca
ggtcggtgggacccaacagcccggattcccccgcccaaatgtctgccatctcagcacaaa
aggcttccctcgcaacagcgggagatcagaggtcccgccgtcccgcgcctgacctcggct
gaggacaggcaccgccatgggccacacgcacacagcccggagttgcagcggaccggcagc
gatttcttggacgccctgcatctccagtgcttctcggccgtactctacatttacctggcc
actgtcactaatgccatcacttttgggggtctgctgggagatgccactgatggtgcccag
ggagtgctggaaagtttcctgggcacagcagtggctggagctgccttctgcctgatggca
ggccagcccctcaccattctgagcagcacggggccagtgctggtctttgagcgcctgctc
ttctctttcagcagagattacagcctggactacctgcccttccgcctatgggtgggcatc
tgggtggctaccttttgcctggtgctggtggccacagaggccagtgtgctggtgcgctac
ttcacccgcttcactgaggaaggtttctgtgccctcatcagcctcatcttcatctacgat
gctgtgggcaaaatgctgaacttgacccatacctatcctatccagaagcctgggtcctct
gcctacgggtgcctctgccaatacccaggcccaggaggaaatgagtctcaatggataagg
acaaggccaaaagacagagacgacattgtaagcatggacttaggcctgatcaatgcatcc
ttgctgccgccacctgagtgcacccggcagggaggccaccctcgtggccctggctgtcat
acagtcccagacattgccttcttctcccttctcctcttccttacttctttcttctttgct
atggccctcaagtgtgtaaagaccagccgcttcttcccctctgtggtgcgcaaagggctc
agcgacttctcctcagtcctggccatcctgctcggctgtggccttgatgctttcctgggc
ctagccacaccaaagctcatggtacccagagagttcaagcccacactccctgggcgtggc
tggctggtgtcaccttttggagccaacccctggtggtggagtgtggcagctgccctgcct
gccctgctgctgtctatcctcatcttcatggaccaacagatcacagcagtcatcctcaac
cgcatggaatacagactgcagaagggagctggcttccacctggacctcttctgtgtggct
gtgctgatgctactcacatcagcgcttggactgccttggtatgtctcagccactgtcatc
tccctggctcacatggacagtcttcggagagagagcagagcctgtgcccccggggagcgc
cccaacttcctgggtatcagggaacagaggctgacaggcctggtggtgttcatccttaca
ggagcctccatcttcctggcacctgtgctcaagttcattccaatgcctgtgctctatggc
atcttcctgtatatgggggtggcagcgctcagcagcattcagttcactaatagggtgaag
ctgttgttgatgccagcaaaacaccagccagacctgctactcttgcggcatgtgcctctg
accagggtccacctcttcacagccatccagcttgcctgtctggggctgctttggataatc
aagtctacccctgcagccatcatcttccccctcatgttgctgggccttgtgggggtccga
aaggccctggagagggtcttctcaccacaggaactcctctggctggatgagctgatgcca
gaggaggagagaagcatccctgagaaggggctggagccagaacactcattcagtggaagt
gacagtgaagat