Result of FASTA (ccds) for pF1KB8245
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8245, 180 aa
  1>>>pF1KB8245 180 - 180 aa - 180 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3419+/-0.00106; mu= 12.6660+/- 0.065
 mean_var=80.8293+/-18.183, 0's: 0 Z-trim(104.5): 168  B-trim: 543 in 2/48
 Lambda= 0.142656
 statistics sampled from 7751 (7956) to 7751 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.244), width:  16
 Scan time:  1.440

The best scores are:                                      opt bits E(32554)
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3             ( 180) 1173 250.9   3e-67
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7            ( 180) 1096 235.1 1.8e-62
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1             ( 181)  975 210.2 5.6e-55
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12            ( 181)  960 207.1 4.8e-54
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14            ( 175)  797 173.6 5.8e-44
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12           ( 181)  699 153.4 7.1e-38
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5           ( 574)  664 146.6 2.5e-35
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5          ( 569)  580 129.3   4e-30
CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2          ( 179)  569 126.6 7.9e-30
CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10        ( 179)  564 125.6 1.6e-29
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11            ( 184)  547 122.1 1.9e-28
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5           ( 546)  552 123.5 2.1e-28
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3          ( 192)  528 118.2 2.9e-27
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7          ( 200)  515 115.6 1.9e-26
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10            ( 182)  505 113.5 7.4e-26
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2          ( 192)  503 113.1   1e-25
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2         ( 201)  503 113.1 1.1e-25
CCDS73510.1 ARL1 gene_id:400|Hs108|chr12           ( 135)  482 108.6 1.6e-24
CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17       ( 179)  460 104.2 4.5e-23
CCDS46425.1 ARL5A gene_id:26225|Hs108|chr2         ( 142)  452 102.5 1.2e-22
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17          ( 201)  452 102.6 1.5e-22
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3           ( 186)  441 100.3   7e-22
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13        ( 196)  427 97.4 5.3e-21
CCDS74086.1 ARL17A gene_id:51326|Hs108|chr17       (  88)  399 91.4 1.6e-19
CCDS74087.1 ARL17A gene_id:51326|Hs108|chr17       ( 141)  399 91.6 2.3e-19
CCDS45718.1 ARL17A gene_id:51326|Hs108|chr17       ( 177)  399 91.6 2.7e-19
CCDS58557.1 ARL17B gene_id:100506084|Hs108|chr17   ( 177)  399 91.6 2.7e-19
CCDS45717.1 ARL17A gene_id:51326|Hs108|chr17       ( 125)  393 90.3 4.8e-19
CCDS54137.1 ARL17B gene_id:100506084|Hs108|chr17   ( 125)  393 90.3 4.8e-19
CCDS82146.1 ARL17A gene_id:51326|Hs108|chr17       (  95)  391 89.8 5.2e-19
CCDS82144.1 ARL17B gene_id:100506084|Hs108|chr17   (  95)  391 89.8 5.2e-19
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3          ( 186)  372 86.1 1.3e-17
CCDS55770.1 ARL2 gene_id:402|Hs108|chr11           ( 157)  362 84.0 4.8e-17
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1         ( 186)  360 83.6 7.3e-17
CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20       ( 201)  348 81.2 4.3e-16
CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20       ( 173)  305 72.3 1.8e-13
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3        ( 428)  304 72.4   4e-13
CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5         ( 204)  299 71.1 4.7e-13
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5         ( 244)  297 70.8 7.1e-13
CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5          ( 198)  284 68.0 3.9e-12
CCDS68172.1 ARFRP1 gene_id:10139|Hs108|chr20       ( 154)  280 67.1 5.7e-12
CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1        ( 147)  275 66.1 1.1e-11
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10         ( 198)  268 64.7 3.8e-11


>>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3                  (180 aa)
 initn: 1173 init1: 1173 opt: 1173  Z-score: 1320.8  bits: 250.9 E(32554): 3e-67
Smith-Waterman score: 1173; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
              130       140       150       160       170       180

>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7                 (180 aa)
 initn: 1096 init1: 1096 opt: 1096  Z-score: 1235.1  bits: 235.1 E(32554): 1.8e-62
Smith-Waterman score: 1096; 90.0% identity (97.2% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       ::::.:.::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
       ::::::::::::.:::::.::::::::::::::::::::.:: ::::::::  :::::::
CCDS34 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
       ::.::::::.:::: .::.::::::: ::.:::::::::::::::::.::::::.:::::
CCDS34 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR
              130       140       150       160       170       180

>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1                  (181 aa)
 initn: 975 init1: 975 opt: 975  Z-score: 1100.5  bits: 210.2 E(32554): 5.6e-55
Smith-Waterman score: 975; 81.9% identity (94.4% similar) in 177 aa overlap (1-177:1-177)

               10        20        30        40        50        60
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       ::  ...::. :::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
       : ::::::::::.:::::.::::::::::::::::::::..:. .::..::  :::::::
CCDS15 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
       ::.:::::::::::  .:.::::::.:::.:.::.::::::.: :::::::::::.:   
CCDS15 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
              130       140       150       160       170       180

CCDS15 K
        

>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12                 (181 aa)
 initn: 960 init1: 960 opt: 960  Z-score: 1083.8  bits: 207.1 E(32554): 4.8e-54
Smith-Waterman score: 960; 78.9% identity (94.4% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       ::  ...:.. :.:::.:::::::::::::::::::::::::::::::::::::::::::
CCDS87 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
       : ::::::::::.:::::.::::::::::::::::::::..:. .::..::  :::::::
CCDS87 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
       ::.:::::::::::  .:.::::::.:::.:.::.::::::.: :::::::::.:.:...
CCDS87 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
              130       140       150       160       170       180

CCDS87 K
        

>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14                 (175 aa)
 initn: 810 init1: 783 opt: 797  Z-score: 902.7  bits: 173.6 E(32554): 5.8e-44
Smith-Waterman score: 797; 65.5% identity (88.9% similar) in 171 aa overlap (5-175:1-171)

               10        20        30        40        50        60
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
           .....:..::.:.:::::.:::::::::::::::::. ::::::.::::::: :::
CCDS96     MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN
                   10        20        30        40        50      

               70        80        90       100       110       120
pF1KB8 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
       . :.::::::::.:::::.::. .:::::::::  ::.::.:. .::....   :.:::.
CCDS96 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
         60        70        80        90       100       110      

              130       140       150       160       170       180
pF1KB8 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
       .:.::::::::.::   :. .::::  .:.:.:::: .:::.: :::::: ::..     
CCDS96 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 
        120       130       140       150       160       170      

>>CCDS44958.1 ARL1 gene_id:400|Hs108|chr12                (181 aa)
 initn: 699 init1: 699 opt: 699  Z-score: 793.5  bits: 153.4 E(32554): 7.1e-38
Smith-Waterman score: 699; 58.3% identity (82.2% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       ::  .::.:: ::: ..::::..:::.::::::::.:..::.:::::::::::::: :::
CCDS44 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
       . : :::.:::  ::: :. :..::...:.:::: ::.::    .::  ::  .::: :.
CCDS44 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
       :..::::::. .::. :::...::: .:..: : .  : ::.:::: :...:: . :..:
CCDS44 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR
              130       140       150       160       170       180

CCDS44 Q
        

>>CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5                (574 aa)
 initn: 676 init1: 532 opt: 664  Z-score: 747.7  bits: 146.6 E(32554): 2.5e-35
Smith-Waterman score: 664; 59.1% identity (84.8% similar) in 164 aa overlap (15-177:402-565)

                               10        20        30        40    
pF1KB8                 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT
                                     : ..:.. .:::.:::::::.:::  :.. 
CCDS39 QQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQ
             380       390       400       410       420       430 

           50        60        70        80        90       100    
pF1KB8 TIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVA
        :::::::::::::::. ::.:::::. ..:::::::. :::...:::::. :.::.:. 
CCDS39 PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAH
             440       450       460       470       480       490 

          110       120       130       140        150       160   
pF1KB8 DELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLR-NRTWYVQATCATQG
       .:: :.:   :::::.::.::::::. .:... :.:. :.:..:  .:.::.:.  : .:
CCDS39 SELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSG
             500       510       520       530       540       550 

           170       180      
pF1KB8 TGLYEGLDWLSNELSKR      
        :::::::::: .:         
CCDS39 MGLYEGLDWLSRQLVAAGVLDVA
             560       570    

>>CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5               (569 aa)
 initn: 591 init1: 532 opt: 580  Z-score: 654.3  bits: 129.3 E(32554): 4e-30
Smith-Waterman score: 580; 58.2% identity (85.6% similar) in 146 aa overlap (15-159:402-546)

                               10        20        30        40    
pF1KB8                 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT
                                     : ..:.. .:::.:::::::.:::  :.. 
CCDS43 QQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQ
             380       390       400       410       420       430 

           50        60        70        80        90       100    
pF1KB8 TIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVA
        :::::::::::::::. ::.:::::. ..:::::::. :::...:::::. :.::.:. 
CCDS43 PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAH
             440       450       460       470       480       490 

          110       120       130       140        150       160   
pF1KB8 DELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLR-NRTWYVQATCATQG
       .:: :.:   :::::.::.::::::. .:... :.:. :.:..:  .:.::.:. :    
CCDS43 SELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQG-CDARS
             500       510       520       530       540        550

           170       180  
pF1KB8 TGLYEGLDWLSNELSKR  
                          
CCDS43 VFQIICDQYTGKEVVTEKG
              560         

>>CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2               (179 aa)
 initn: 561 init1: 561 opt: 569  Z-score: 649.0  bits: 126.6 E(32554): 7.9e-30
Smith-Waterman score: 569; 46.1% identity (77.2% similar) in 180 aa overlap (1-180:1-179)

               10        20        30        40        50        60
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       ::. .. .. :::.... ....:::: ::::::::.....:.: : :::: ::: .  .:
CCDS21 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB8 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
         : .::.:::. .:  :. :. ::. .: ::::.:::::. . .:: :::  ..:: : 
CCDS21 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB8 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
       ::.::::::. . :...:... : : :.... :..:: ::  : :: .::.:. ..:. :
CCDS21 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR
     120       130       140       150       160       170         

>>CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10             (179 aa)
 initn: 576 init1: 545 opt: 564  Z-score: 643.4  bits: 125.6 E(32554): 1.6e-29
Smith-Waterman score: 564; 45.0% identity (77.2% similar) in 180 aa overlap (1-180:1-179)

               10        20        30        40        50        60
pF1KB8 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
       ::: ...:.: :: ... ....:::: ::::::::.. ..:.: : :::: ::: .  ::
CCDS71 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN
               10         20        30        40        50         

               70        80        90       100       110       120
pF1KB8 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
         : .::.:::. .:  :. :..::. .:.:::: ::::.  . .:: .::  ..:: :.
CCDS71 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB8 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
       .:.::::::. . :. .:..  : :.:.... :..:. ::  : :: .::.:...... :
CCDS71 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
     120       130       140       150       160       170         




180 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:56:58 2016 done: Fri Nov  4 10:56:58 2016
 Total Scan time:  1.440 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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