Result of FASTA (ccds) for pF1KB8242
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8242, 198 aa
  1>>>pF1KB8242 198 - 198 aa - 198 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1940+/-0.000802; mu= 11.4447+/- 0.049
 mean_var=136.4322+/-27.290, 0's: 0 Z-trim(113.4): 43  B-trim: 118 in 1/51
 Lambda= 0.109803
 statistics sampled from 13992 (14034) to 13992 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.431), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS5612.1 SRI gene_id:6717|Hs108|chr7             ( 198) 1386 229.9 8.1e-61
CCDS47638.1 SRI gene_id:6717|Hs108|chr7            ( 183) 1249 208.1 2.6e-54
CCDS59063.1 SRI gene_id:6717|Hs108|chr7            ( 180) 1194 199.4 1.1e-51
CCDS82527.1 GCA gene_id:25801|Hs108|chr2           ( 198)  811 138.8 2.1e-33
CCDS2218.1 GCA gene_id:25801|Hs108|chr2            ( 217)  811 138.8 2.3e-33
CCDS345.1 PEF1 gene_id:553115|Hs108|chr1           ( 284)  418 76.7 1.5e-14
CCDS3854.1 PDCD6 gene_id:10016|Hs108|chr5          ( 191)  414 75.9 1.8e-14
CCDS58940.1 PDCD6 gene_id:10016|Hs108|chr5         ( 189)  402 74.0 6.6e-14
CCDS45246.1 CAPN3 gene_id:825|Hs108|chr15          ( 309)  362 67.9 7.5e-12
CCDS12489.1 CAPNS1 gene_id:826|Hs108|chr19         ( 268)  359 67.3 9.4e-12
CCDS10085.1 CAPN3 gene_id:825|Hs108|chr15          ( 729)  362 68.3 1.3e-11
CCDS32207.1 CAPN3 gene_id:825|Hs108|chr15          ( 815)  362 68.3 1.4e-11
CCDS45245.1 CAPN3 gene_id:825|Hs108|chr15          ( 821)  362 68.3 1.5e-11
CCDS54010.1 CAPNS2 gene_id:84290|Hs108|chr16       ( 248)  339 64.1   8e-11


>>CCDS5612.1 SRI gene_id:6717|Hs108|chr7                  (198 aa)
 initn: 1386 init1: 1386 opt: 1386  Z-score: 1205.3  bits: 229.9 E(32554): 8.1e-61
Smith-Waterman score: 1386; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)

               10        20        30        40        50        60
pF1KB8 MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 DPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQ
              130       140       150       160       170       180

              190        
pF1KB8 QGVVNFPYDDFIQCVMSV
       ::::::::::::::::::
CCDS56 QGVVNFPYDDFIQCVMSV
              190        

>>CCDS47638.1 SRI gene_id:6717|Hs108|chr7                 (183 aa)
 initn: 1249 init1: 1249 opt: 1249  Z-score: 1088.4  bits: 208.1 E(32554): 2.6e-54
Smith-Waterman score: 1249; 100.0% identity (100.0% similar) in 181 aa overlap (18-198:3-183)

               10        20        30        40        50        60
pF1KB8 MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQ
                        :::::::::::::::::::::::::::::::::::::::::::
CCDS47                MQYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQ
                              10        20        30        40     

               70        80        90       100       110       120
pF1KB8 SGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTV
          50        60        70        80        90       100     

              130       140       150       160       170       180
pF1KB8 DPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQ
         110       120       130       140       150       160     

              190        
pF1KB8 QGVVNFPYDDFIQCVMSV
       ::::::::::::::::::
CCDS47 QGVVNFPYDDFIQCVMSV
         170       180   

>>CCDS59063.1 SRI gene_id:6717|Hs108|chr7                 (180 aa)
 initn: 1194 init1: 1194 opt: 1194  Z-score: 1041.4  bits: 199.4 E(32554): 1.1e-51
Smith-Waterman score: 1194; 100.0% identity (100.0% similar) in 173 aa overlap (18-190:3-175)

               10        20        30        40        50        60
pF1KB8 MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQ
                        :::::::::::::::::::::::::::::::::::::::::::
CCDS59                MQYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQ
                              10        20        30        40     

               70        80        90       100       110       120
pF1KB8 SGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTV
          50        60        70        80        90       100     

              130       140       150       160       170       180
pF1KB8 DPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALTDSFRRRDTAQ
         110       120       130       140       150       160     

              190        
pF1KB8 QGVVNFPYDDFIQCVMSV
       ::::::::::        
CCDS59 QGVVNFPYDDVSLRN   
         170       180   

>>CCDS82527.1 GCA gene_id:25801|Hs108|chr2                (198 aa)
 initn: 817 init1: 782 opt: 811  Z-score: 713.0  bits: 138.8 E(32554): 2.1e-33
Smith-Waterman score: 811; 59.4% identity (82.3% similar) in 192 aa overlap (7-198:8-198)

                10        20        30        40        50         
pF1KB8  MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLT
              : .: .    ::.: :.     ... : .: ::.:::::::..::.:::::::
CCDS82 MQMGQPVPETGPAILLDGYSG-PAYSDTYSSAGDSVYTYFSAVAGQDGEVDAEELQRCLT
               10        20         30        40        50         

      60        70        80        90       100       110         
pF1KB8 QSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGT
       :::: : :.::.:::::.:..::::: .: :::: ::::::.::.:...:.. : : :::
CCDS82 QSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNAWKENFMTVDQDGSGT
      60        70        80        90       100       110         

     120       130       140       150       160       170         
pF1KB8 VDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACCVKLRALTDSFRRRDTA
       :. .::..:.  ::.:::::....:.:::: ::.: ::::.::::::::::: ::.::  
CCDS82 VEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVACCVKLRALTDFFRKRDHL
     120       130       140       150       160       170         

     180       190        
pF1KB8 QQGVVNFPYDDFIQCVMSV
       ::: .:: ::::.: .:..
CCDS82 QQGSANFIYDDFLQGTMAI
     180       190        

>>CCDS2218.1 GCA gene_id:25801|Hs108|chr2                 (217 aa)
 initn: 860 init1: 782 opt: 811  Z-score: 712.6  bits: 138.8 E(32554): 2.3e-33
Smith-Waterman score: 833; 56.2% identity (77.4% similar) in 217 aa overlap (1-198:1-217)

               10           20                        30        40 
pF1KB8 MAYPGHPGAGGGY---YPGGYGGAP-------------GGPAFP---GQTQDPLYGYFAA
       :::::. :. :..    ::   : :             .:::.    ... : .: ::.:
CCDS22 MAYPGYGGGFGNFSIQVPGMQMGQPVPETGPAILLDGYSGPAYSDTYSSAGDSVYTYFSA
               10        20        30        40        50        60

              50        60        70        80        90       100 
pF1KB8 VAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAV
       ::::::..::.::::::::::: : :.::.:::::.:..::::: .: :::: ::::::.
CCDS22 VAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAA
               70        80        90       100       110       120

             110       120       130       140       150       160 
pF1KB8 LNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIA
       ::.:...:.. : : ::::. .::..:.  ::.:::::....:.:::: ::.: ::::.:
CCDS22 LNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVA
              130       140       150       160       170       180

             170       180       190        
pF1KB8 CCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV
       :::::::::: ::.::  ::: .:: ::::.: .:..
CCDS22 CCVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI
              190       200       210       

>>CCDS345.1 PEF1 gene_id:553115|Hs108|chr1                (284 aa)
 initn: 422 init1: 252 opt: 418  Z-score: 374.7  bits: 76.7 E(32554): 1.5e-14
Smith-Waterman score: 432; 35.9% identity (62.7% similar) in 217 aa overlap (5-197:65-281)

                                         10           20           
pF1KB8                           MAYPGHPGAG--GGYYPGG-YGGA-PGGP-AFP-
                                     :::. :   .  ::: :::: :::: . : 
CCDS34 QYGSGLPPGGGYGGPAPGGPYGPPAGGGPYGHPNPGMFPSGTPGGPYGGAAPGGPYGQPP
           40        50        60        70        80        90    

           30        40               50            60        70   
pF1KB8 ----GQTQDPLYGYFAAVAGQDGQ-------IDADEL----QRCLTQSGIAGGYKPFNLE
           :  :  :::  .:  . : .       .:.:.     .. : :. .  ... :: :
CCDS34 PSSYGAQQPGLYGQGGAPPNVDPEAYSWFQSVDSDHSGYISMKELKQALVNCNWSSFNDE
          100       110       120       130       140       150    

            80        90       100       110       120       130   
pF1KB8 TCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMG
       :: .:..:.:.  :: .    :. ::  .. :.. : ..: ::::...  :::.::. ::
CCDS34 TCLMMINMFDKTKSGRIDVYGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMG
          160       170       180       190       200       210    

           140          150       160       170       180       190
pF1KB8 FRLSPQAVNSIAKRY---STNGKITFDDYIACCVKLRALTDSFRRRDTAQQGVVNFPYDD
       . :::: .. ...::   :.:  . .: .:  :..:..::..::..::: :: . . ..:
CCDS34 YNLSPQFTQLLVSRYCPRSANPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFED
          220       230       240       250       260       270    

                 
pF1KB8 FIQCVMSV  
       :.  . :   
CCDS34 FVTMTASRML
          280    

>>CCDS3854.1 PDCD6 gene_id:10016|Hs108|chr5               (191 aa)
 initn: 446 init1: 212 opt: 414  Z-score: 373.3  bits: 75.9 E(32554): 1.8e-14
Smith-Waterman score: 419; 36.5% identity (66.0% similar) in 200 aa overlap (2-198:3-190)

                10        20        30        40         50        
pF1KB8  MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAV-AGQDGQIDADELQRCL
         ::  .:: :.:  ::  .::    :.: :.   :.. :  :   ..: :.  :::. :
CCDS38 MAAYSYRPGPGAG--PGPAAGA----ALPDQSF--LWNVFQRVDKDRSGVISDTELQQAL
               10          20              30        40        50  

       60        70        80        90       100       110        
pF1KB8 TQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSG
       ..    : . :::  : : ..::.::. .. ..:.::  .:  .. :.. : ..: : ::
CCDS38 SN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSG
                 60        70        80        90       100        

      120       130       140       150         160       170      
pF1KB8 TVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIACCVKLRALTDSFRRR
        .: .::..::. .:.::: :  . . .... .:.  :.:::.:  :. :. ::: ::: 
CCDS38 MIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRY
      110       120       130       140       150       160        

        180       190         
pF1KB8 DTAQQGVVNFPYDDFIQCVMSV 
       :: :.: ..  :..... :.:. 
CCDS38 DTDQDGWIQVSYEQYLSMVFSIV
      170       180       190 

>>CCDS58940.1 PDCD6 gene_id:10016|Hs108|chr5              (189 aa)
 initn: 440 init1: 298 opt: 402  Z-score: 363.1  bits: 74.0 E(32554): 6.6e-14
Smith-Waterman score: 407; 36.5% identity (65.5% similar) in 200 aa overlap (2-198:3-188)

                10        20        30        40         50        
pF1KB8  MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAV-AGQDGQIDADELQRCL
         ::  .:: :.:  ::  .::    :.: :.   :.. :  :   ..: :.  :::. :
CCDS58 MAAYSYRPGPGAG--PGPAAGA----ALPDQSF--LWNVFQRVDKDRSGVISDTELQQAL
               10          20              30        40        50  

       60        70        80        90       100       110        
pF1KB8 TQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSG
       ..    : . :::  : : ..::.::. .. ..:.::  .:  .. :.. : ..: : ::
CCDS58 SN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSG
                 60        70        80        90       100        

      120       130       140       150         160       170      
pF1KB8 TVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIACCVKLRALTDSFRRR
        .: .::..::.  :.::: :  . . .... .:.  :.:::.:  :. :. ::: ::: 
CCDS58 MIDKNELKQALS--GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRY
      110       120         130       140       150       160      

        180       190         
pF1KB8 DTAQQGVVNFPYDDFIQCVMSV 
       :: :.: ..  :..... :.:. 
CCDS58 DTDQDGWIQVSYEQYLSMVFSIV
        170       180         

>>CCDS45246.1 CAPN3 gene_id:825|Hs108|chr15               (309 aa)
 initn: 316 init1: 250 opt: 362  Z-score: 326.3  bits: 67.9 E(32554): 7.5e-12
Smith-Waterman score: 362; 31.5% identity (68.0% similar) in 181 aa overlap (22-196:129-307)

                        10        20        30        40        50 
pF1KB8          MAYPGHPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDA
                                     ::.    .. :. . . :  .::.: .: :
CCDS45 SNKELGVDQESEEGKGKTSPDKQKQSPQPQPGSSDQESEEQQQFRNIFKQIAGDDMEICA
      100       110       120       130       140       150        

              60             70        80        90       100      
pF1KB8 DELQRCLTQSGIAGGYKP-----FNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWR
       :::.. :  . ... .:      :.::.:: :....: : :: ....::..::  ...:.
CCDS45 DELKKVL--NTVVNKHKDLKTHGFTLESCRSMIALMDTDGSGKLNLQEFHHLWNKIKAWQ
      160         170       180       190       200       210      

        110       120       130       140       150        160     
pF1KB8 QHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNG-KITFDDYIACCVK
       . :  .:::.:::..  :...:..  ::.:. :  . :. ::. .  .: ::..: : :.
CCDS45 KIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITMRYADKHMNIDFDSFICCFVR
        220       230       240       250       260       270      

         170       180       190        
pF1KB8 LRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV
       :...  .:.  :   .:....   ...: .:  
CCDS45 LEGMFRAFHAFDKDGDGIIKLNVLEWLQLTMYA
        280       290       300         

>>CCDS12489.1 CAPNS1 gene_id:826|Hs108|chr19              (268 aa)
 initn: 315 init1: 254 opt: 359  Z-score: 324.5  bits: 67.3 E(32554): 9.4e-12
Smith-Waterman score: 359; 36.4% identity (65.4% similar) in 162 aa overlap (39-196:105-266)

       10        20        30        40        50        60        
pF1KB8 AGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAG-GY
                                     :: .::.: ...: ::.  :..        
CCDS12 QYNPEPPPPRTHYSNIEANESEEVRQFRRLFAQLAGDDMEVSATELMNILNKVVTRHPDL
           80        90       100       110       120       130    

          70        80        90       100       110       120     
pF1KB8 KP--FNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQEL
       :   :...::: ::...: : .: .::.::: ::  .. :.  . .::::::::.  .::
CCDS12 KTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKRWQAIYKQFDTDRSGTICSSEL
          140       150       160       170       180       190    

         130       140       150        160       170       180    
pF1KB8 QKALTTMGFRLSPQAVNSIAKRYST-NGKITFDDYIACCVKLRALTDSFRRRDTAQQGVV
         :. . ::.:. .  : : .:::  .:.. ::..:.: :.: :.  .:.  :    : .
CCDS12 PGAFEAAGFHLNEHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQI
          200       210       220       230       240       250    

          190        
pF1KB8 NFPYDDFIQCVMSV
       .   ....: .:  
CCDS12 QVNIQEWLQLTMYS
          260        




198 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:54:55 2016 done: Fri Nov  4 10:54:55 2016
 Total Scan time:  1.760 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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