Result of FASTA (omim) for pF1KB8227
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8227, 185 aa
  1>>>pF1KB8227 185 - 185 aa - 185 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5687+/-0.000282; mu= -0.0231+/- 0.018
 mean_var=200.4596+/-41.084, 0's: 0 Z-trim(124.4): 18  B-trim: 0 in 0/59
 Lambda= 0.090586
 statistics sampled from 46042 (46060) to 46042 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.54), width:  16
 Scan time:  5.620

The best scores are:                                      opt bits E(85289)
NP_002405 (OMIM: 313470,450000) CD99 antigen isofo ( 185) 1248 174.0 1.2e-43
NP_001308297 (OMIM: 313470,450000) CD99 antigen is ( 184) 1231 171.8 5.5e-43
NP_001308296 (OMIM: 313470,450000) CD99 antigen is ( 160) 1077 151.6 5.7e-37
NP_001116370 (OMIM: 313470,450000) CD99 antigen is ( 169)  937 133.4 1.9e-31
NP_001308298 (OMIM: 313470,450000) CD99 antigen is ( 168)  920 131.1 8.8e-31
NP_001308299 (OMIM: 313470,450000) CD99 antigen is ( 168)  715 104.4   1e-22
NP_604395 (OMIM: 300846) CD99 antigen-like protein ( 213)  264 45.5 6.8e-05
NP_113650 (OMIM: 300846) CD99 antigen-like protein ( 262)  261 45.2  0.0001
XP_016885380 (OMIM: 300846) PREDICTED: CD99 antige ( 218)  255 44.3 0.00016
NP_001229543 (OMIM: 300846) CD99 antigen-like prot ( 272)  254 44.3  0.0002
XP_016885379 (OMIM: 300846) PREDICTED: CD99 antige ( 267)  252 44.0 0.00024
NP_604394 (OMIM: 300846) CD99 antigen-like protein ( 190)  249 43.5 0.00024


>>NP_002405 (OMIM: 313470,450000) CD99 antigen isoform a  (185 aa)
 initn: 1248 init1: 1248 opt: 1248  Z-score: 904.7  bits: 174.0 E(85289): 1.2e-43
Smith-Waterman score: 1248; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)

               10        20        30        40        50        60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
              130       140       150       160       170       180

            
pF1KB8 TLLEK
       :::::
NP_002 TLLEK
            

>>NP_001308297 (OMIM: 313470,450000) CD99 antigen isofor  (184 aa)
 initn: 1232 init1: 1078 opt: 1231  Z-score: 892.7  bits: 171.8 E(85289): 5.5e-43
Smith-Waterman score: 1231; 99.5% identity (99.5% similar) in 185 aa overlap (1-185:1-184)

               10        20        30        40        50        60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
NP_001 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKEN-EQGEVDMESHRNANAEPAVQR
              130       140       150        160       170         

            
pF1KB8 TLLEK
       :::::
NP_001 TLLEK
     180    

>>NP_001308296 (OMIM: 313470,450000) CD99 antigen isofor  (160 aa)
 initn: 1077 init1: 1077 opt: 1077  Z-score: 784.8  bits: 151.6 E(85289): 5.7e-37
Smith-Waterman score: 1077; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
       ::::::::::::::::::::::::::::::::::::::                      
NP_001 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENDG                    
              130       140       150       160                    

            
pF1KB8 TLLEK

>>NP_001116370 (OMIM: 313470,450000) CD99 antigen isofor  (169 aa)
 initn: 932 init1: 932 opt: 937  Z-score: 685.6  bits: 133.4 E(85289): 1.9e-31
Smith-Waterman score: 1099; 91.4% identity (91.4% similar) in 185 aa overlap (1-185:1-169)

               10        20        30        40        50        60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
       :::::::::::::::::::::::::::::::::                :::::::::::
NP_001 MARGAALALLLFGLLGVLVAAPDGGFDLSDALP----------------GDDFDLGDAVV
               10        20        30                        40    

               70        80        90       100       110       120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
           50        60        70        80        90       100    

              130       140       150       160       170       180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
          110       120       130       140       150       160    

            
pF1KB8 TLLEK
       :::::
NP_001 TLLEK
            

>>NP_001308298 (OMIM: 313470,450000) CD99 antigen isofor  (168 aa)
 initn: 1157 init1: 762 opt: 920  Z-score: 673.6  bits: 131.1 E(85289): 8.8e-31
Smith-Waterman score: 1082; 90.8% identity (90.8% similar) in 185 aa overlap (1-185:1-168)

               10        20        30        40        50        60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
       :::::::::::::::::::::::::::::::::                :::::::::::
NP_001 MARGAALALLLFGLLGVLVAAPDGGFDLSDALP----------------GDDFDLGDAVV
               10        20        30                        40    

               70        80        90       100       110       120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
           50        60        70        80        90       100    

              130       140       150       160       170       180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
NP_001 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKEN-EQGEVDMESHRNANAEPAVQR
          110       120       130       140        150       160   

            
pF1KB8 TLLEK
       :::::
NP_001 TLLEK
            

>>NP_001308299 (OMIM: 313470,450000) CD99 antigen isofor  (168 aa)
 initn: 715 init1: 715 opt: 715  Z-score: 528.8  bits: 104.4 E(85289): 1e-22
Smith-Waterman score: 1083; 90.8% identity (90.8% similar) in 185 aa overlap (1-185:1-168)

               10        20        30        40        50        60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
       :::::::::::::::::::::::::::::::::::::::::::                 
NP_001 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGE-----------------
               70        80        90       100                    

              130       140       150       160       170       180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
           110       120       130       140       150       160   

            
pF1KB8 TLLEK
       :::::
NP_001 TLLEK
            

>>NP_604395 (OMIM: 300846) CD99 antigen-like protein 2 i  (213 aa)
 initn: 191 init1: 145 opt: 264  Z-score: 208.8  bits: 45.5 E(85289): 6.8e-05
Smith-Waterman score: 282; 36.7% identity (60.4% similar) in 207 aa overlap (3-183:5-197)

                 10        20           30        40               
pF1KB8   MARGAALALLLFGLLGVLVAAPDGGFD---LSDALPDNENKKP-----TAIPKKP---
           :.: :. : :.: ..::   .: ::   : ::. .. . :      :.  :.:   
NP_604 MVAWRSAFLVCLAFSL-ATLVQRGSGDFDDFNLEDAVKETSSVKQRWNHVTTTTKRPVTT
               10         20        30        40        50         

             50        60        70        80        90       100  
pF1KB8 -----SAGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGG
            . :.::::.::. : .::  :  .  ::.        ...:.::: :: : :.::
NP_604 RAPANTLGNDFDLADAL-DDRND--RDDGRRKPI--------AGGGGFSDKDLEDIVGGG
      60        70         80          90               100        

               110        120        130       140       150       
pF1KB8 E---GKGGSDGG-GSHRKEGEEADA-PGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKE
       :    :: .::  ::.   :    : ::.: :...:...:. ::.::.:.::.::.::  
NP_604 EYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCF--
      110       120       130       140       150       160        

       160        170           180                   
pF1KB8 NAEQG-EVDMESHRNANA----EPAVQRTLLEK              
       . .:: ..:. . .: .:    :: :. . :                
NP_604 SIQQGLNADYVKGENLEAVVCEEPQVKYSTLHTQSAEPPPPPEPARI
        170       180       190       200       210   

>>NP_113650 (OMIM: 300846) CD99 antigen-like protein 2 i  (262 aa)
 initn: 231 init1: 145 opt: 261  Z-score: 205.5  bits: 45.2 E(85289): 0.0001
Smith-Waterman score: 287; 36.8% identity (60.6% similar) in 193 aa overlap (22-183:67-246)

                        10        20        30          40         
pF1KB8          MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNEN--KKP---------
                                     : .:.::.::: :...  .::         
NP_113 KETSSVKQPWDHTTTTTTNRPGTTRAPAKPPGSGLDLADALDDQDDGRRKPGIGGRERWN
         40        50        60        70        80        90      

                         50        60        70        80        90
pF1KB8 --TAIPKKP--------SAGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSF
         :.  :.:        . :.::::.::. : .::  :  .  ::.        ...:.:
NP_113 HVTTTTKRPVTTRAPANTLGNDFDLADAL-DDRND--RDDGRRKPI--------AGGGGF
        100       110       120        130                 140     

              100          110        120        130       140     
pF1KB8 SDADLADGVSGGE---GKGGSDGG-GSHRKEGEEADA-PGVIPGIVGAVVVAVAGAISSF
       :: :: : :.:::    :: .::  ::.   :    : ::.: :...:...:. ::.::.
NP_113 SDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMALIGAVSSY
         150       160       170       180       190       200     

         150       160        170           180                   
pF1KB8 IAYQKKKLCFKENAEQG-EVDMESHRNANA----EPAVQRTLLEK              
       :.::.::.::  . .:: ..:. . .: .:    :: :. . :                
NP_113 ISYQQKKFCF--SIQQGLNADYVKGENLEAVVCEEPQVKYSTLHTQSAEPPPPPEPARI
         210         220       230       240       250       260  

>>XP_016885380 (OMIM: 300846) PREDICTED: CD99 antigen-li  (218 aa)
 initn: 191 init1: 145 opt: 255  Z-score: 202.3  bits: 44.3 E(85289): 0.00016
Smith-Waterman score: 273; 37.7% identity (61.2% similar) in 183 aa overlap (3-163:5-175)

                 10        20           30        40               
pF1KB8   MARGAALALLLFGLLGVLVAAPDGGFD---LSDALPDNENKKP-----TAIPKKP---
           :.: :. : :.: ..::   .: ::   : ::. .. . :      :.  :.:   
XP_016 MVAWRSAFLVCLAFSL-ATLVQRGSGDFDDFNLEDAVKETSSVKQRWNHVTTTTKRPVTT
               10         20        30        40        50         

             50        60        70        80        90       100  
pF1KB8 -----SAGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGG
            . :.::::.::. : .::  :  .  ::.        ...:.::: :: : :.::
XP_016 RAPANTLGNDFDLADAL-DDRND--RDDGRRKPI--------AGGGGFSDKDLEDIVGGG
      60        70         80          90               100        

               110        120        130       140       150       
pF1KB8 E---GKGGSDGG-GSHRKEGEEADA-PGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFK-
       :    :: .::  ::.   :    : ::.: :...:...:. ::.::.:.::.::.::. 
XP_016 EYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSI
      110       120       130       140       150       160        

        160       170       180                          
pF1KB8 ENAEQGEVDMESHRNANAEPAVQRTLLEK                     
       ..:  :.                                           
XP_016 QHAAAGQGNAALPSSLSFCFSLDASSFAPCSGASLPLFSLLLPWHSPTWL
      170       180       190       200       210        

>>NP_001229543 (OMIM: 300846) CD99 antigen-like protein   (272 aa)
 initn: 231 init1: 145 opt: 254  Z-score: 200.3  bits: 44.3 E(85289): 0.0002
Smith-Waterman score: 274; 35.8% identity (58.3% similar) in 204 aa overlap (20-183:64-256)

                          10        20             30          40  
pF1KB8            MARGAALALLLFGLLGVLVAAPDG-----GFDLSDALPDNEN--KKP--
                                     : : :     :.::.::: :...  .::  
NP_001 DAVKETSSVKQPWDHTTTTTTNRPGTTRAPAKPPGPTEGSGLDLADALDDQDDGRRKPGI
            40        50        60        70        80        90   

                                50        60        70        80   
pF1KB8 ---------TAIPKKP--------SAGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNH
                :.  :.:        . :.::::.::. : .::  :  .  ::.       
NP_001 GGRERWNHVTTTTKRPVTTRAPANTLGNDFDLADAL-DDRND--RDDGRRKPI-------
           100       110       120        130         140          

            90       100          110        120        130        
pF1KB8 PSSSGSFSDADLADGVSGGE---GKGGSDGG-GSHRKEGEEADA-PGVIPGIVGAVVVAV
        ...:.::: :: : :.:::    :: .::  ::.   :    : ::.: :...:...:.
NP_001 -AGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMAL
            150       160       170       180       190       200  

      140       150        160           170           180         
pF1KB8 AGAISSFIAYQKKKLCFK-ENAEQGE----VDMESHRNANA----EPAVQRTLLEK    
        ::.::.:.::.::.::. ..:  :.    .:. . .: .:    :: :. . :      
NP_001 IGAVSSYISYQQKKFCFSIQHAAAGQEGLNADYVKGENLEAVVCEEPQVKYSTLHTQSAE
            210       220       230       240       250       260  

NP_001 PPPPPEPARI
            270  




185 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:45:00 2016 done: Fri Nov  4 10:45:01 2016
 Total Scan time:  5.620 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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