FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8218, 185 aa
  1>>>pF1KB8218 185 - 185 aa - 185 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4890+/-0.000656; mu= 11.6620+/- 0.040
 mean_var=58.8374+/-11.583, 0's: 0 Z-trim(110.1): 9  B-trim: 51 in 1/49
 Lambda= 0.167204
 statistics sampled from 11359 (11367) to 11359 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.349), width:  16
 Scan time:  1.600

The best scores are:                                      opt bits E(32554)
CCDS3376.1 NSG1 gene_id:27065|Hs108|chr4           ( 185) 1203 297.9 2.4e-81
CCDS4391.1 HMP19 gene_id:51617|Hs108|chr5          ( 171)  381 99.6 1.1e-21
CCDS7678.1 CALY gene_id:50632|Hs108|chr10          ( 217)  378 98.9 2.2e-21


>>CCDS3376.1 NSG1 gene_id:27065|Hs108|chr4                (185 aa)
 initn: 1203 init1: 1203 opt: 1203  Z-score: 1574.0  bits: 297.9 E(32554): 2.4e-81
Smith-Waterman score: 1203; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)

               10        20        30        40        50        60
pF1KB8 MVKLGNNFAEKGTKQPLLEDGFDTIPLMTPLDVNQLQFPPPDKVVVKTKTEYEPDRKKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MVKLGNNFAEKGTKQPLLEDGFDTIPLMTPLDVNQLQFPPPDKVVVKTKTEYEPDRKKGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ARPPQIAEFTVSITEGVTERFKVSVLVLFALAFLTCVVFLVVYKVYKYDRACPDGFVLKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ARPPQIAEFTVSITEGVTERFKVSVLVLFALAFLTCVVFLVVYKVYKYDRACPDGFVLKN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 TQCIPEGLESYYAEQDSSAREKFYTVINHYNLAKQSITRSVSPWMSVLSEEKLSEQETEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TQCIPEGLESYYAEQDSSAREKFYTVINHYNLAKQSITRSVSPWMSVLSEEKLSEQETEA
              130       140       150       160       170       180

            
pF1KB8 AEKSA
       :::::
CCDS33 AEKSA
            

>>CCDS4391.1 HMP19 gene_id:51617|Hs108|chr5               (171 aa)
 initn: 613 init1: 362 opt: 381  Z-score: 502.9  bits: 99.6 E(32554): 1.1e-21
Smith-Waterman score: 656; 56.2% identity (81.2% similar) in 176 aa overlap (1-172:1-164)

               10        20        30        40        50          
pF1KB8 MVKLGNNFAEKGTKQPLLEDGFDTIPLMTPLDVNQLQFPPPDKVVVKTKTEYEPDRK-KG
       ::::..: .::::: : .::::.:.::.:::.::.::.: :.::.:::.:::.:..: ::
CCDS43 MVKLNSNPSEKGTKPPSVEDGFQTVPLITPLEVNHLQLPAPEKVIVKTRTEYQPEQKNKG
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB8 KARPPQIAEFTVSITEGVTERFKVSVLVLFALAFLTCVVFLVVYKVYKYDRACPDGFVLK
       : : :.::::::.:            :: .:::::.:.:::::::.. ::..::.::: :
CCDS43 KFRVPKIAEFTVTI------------LVSLALAFLACIVFLVVYKAFTYDHSCPEGFVYK
               70                    80        90       100        

     120       130       140       150       160          170      
pF1KB8 NTQCIPEGLESYYAEQDSSAREKFYTVINHYNLAKQSITRSVSPWMS---VLSEEKLSEQ
       . .::: .:..::. :: ..: .:::::.::..:::: .:...::.:   :. : :    
CCDS43 HKRCIPASLDAYYSSQDPNSRSRFYTVISHYSVAKQSTARAIGPWLSAAAVIHEPKPPKT
      110       120       130       140       150       160        

        180     
pF1KB8 ETEAAEKSA
                
CCDS43 QGH      
      170       

>>CCDS7678.1 CALY gene_id:50632|Hs108|chr10               (217 aa)
 initn: 319 init1: 165 opt: 378  Z-score: 497.3  bits: 98.9 E(32554): 2.2e-21
Smith-Waterman score: 378; 38.8% identity (68.8% similar) in 170 aa overlap (1-164:1-165)

               10        20          30        40        50        
pF1KB8 MVKLGNNFAEKGTKQPLLEDG--FDTIPLMTPLDVNQLQFPPPDKVVVKTKTEYE---PD
       ::::: .:. :  :.:  .::  .:..::..:::..::: : ::.::.::.:::.   ::
CCDS76 MVKLGCSFSGKPGKDPGDQDGAAMDSVPLISPLDISQLQPPLPDQVVIKTQTEYQLSSPD
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB8 RKKGKARPPQIAEFTVSITEGVTERFKVSVLVLFALAFLTCVVFLVVYKVYKYDR-ACPD
       ...      :  . .    ::  .:. .. .. ::.:.: ::  :..::.  ::. .:::
CCDS76 QQNFPDLEGQRLNCS-HPEEG--RRLPTARMIAFAMALLGCV--LIMYKAIWYDQFTCPD
               70         80          90         100       110     

          120       130       140       150       160       170    
pF1KB8 GFVLKNTQCIPEGLESYYAEQDSSAREKFYTVINHYNLAKQSITRSVSPWMSVLSEEKLS
       ::.:..  : :  :: ::.:.:   .... ..:. : :...  :.. . :          
CCDS76 GFLLRHKICTPLTLEMYYTEMDPERHRSILAAIGAYPLSRKHGTETPAAWGDGYRAAKEE
         120       130       140       150       160       170     

          180                                    
pF1KB8 EQETEAAEKSA                               
                                                 
CCDS76 RKGPTQAGAAAAATEPPGKPSAKAEKEAARKAAGSAAPPPAQ
         180       190       200       210       




185 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:39:36 2016 done: Fri Nov  4 10:39:36 2016
 Total Scan time:  1.600 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]