GENSCAN 1.0	Date run:  4-Nov-116	Time: 10:40:01

Sequence gi568815594f:4287630_4517432 : 229803 bp : 45.72% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   2305   2627  323  0  2   51  -39   228 0.048   3.23
 1.02 Intr +  12298  12468  171  1  0   67   80    87 0.324   4.86
 1.03 Intr +  14360  15462 1103  2  2   70   93   451 0.199  33.34
 1.04 Intr +  18509  18555   47  0  2  105   75    11 0.177  -0.37
 1.05 Intr +  25412  25485   74  1  2  119   78    94 0.397   9.70
 1.06 Intr +  26087  26210  124  2  1   77   20   111 0.374   3.79
 1.07 Intr +  27708  27780   73  2  1   85   75    35 0.953   0.88
 1.08 Intr +  28180  28341  162  2  0  106  101    90 0.996  12.05
 1.09 Term +  33011  33687  677  0  2  123   41   715 0.993  64.18
 1.10 PlyA +  34132  34137    6                               1.05

 2.00 Prom +  34742  34781   40                              -8.26
 2.01 Init +  34907  34916   10  1  1   84   94    16 0.145   2.25
 2.02 Intr +  42217  42284   68  2  2  123   88     0 0.248   2.12
 2.03 Intr +  47157  47310  154  2  1   72   86   137 0.319  11.55
 2.04 Intr +  51962  52070  109  0  1  -14  103   109 0.143   1.54
 2.05 Intr +  60763  60842   80  1  2   69  101    76 0.220   6.19
 2.06 Intr +  61055  61205  151  0  1   45   37    75 0.034  -2.68
 2.07 Intr +  76320  76450  131  0  2   93   81    31 0.400   3.24
 2.08 Intr +  77837  77967  131  0  2   57   82    67 0.184   3.41
 2.09 Intr +  85015  85154  140  0  2   74   -3    84 0.297  -2.84
 2.10 Term +  89670  89880  211  0  1   45   37   219 0.354   9.27
 2.11 PlyA +  90099  90104    6                              -0.45

 3.00 Prom +  92705  92744   40                              -2.06
 3.01 Init + 100001 100129  129  1  0   94  121   250 0.829  29.05
 3.02 Intr + 103846 103962  117  0  0   51  113   196 0.991  19.06
 3.03 Intr + 105827 105952  126  1  0   60   42    90 0.039   2.48
 3.04 Intr + 109838 109953  116  1  2   53  101    28 0.050  -0.15
 3.05 Intr + 113783 113891  109  2  1  111  107    39 0.074   8.39
 3.06 Intr + 115500 115583   84  2  0   78  105     7 0.036   1.42
 3.07 Intr + 119207 119365  159  1  0   69   53    79 0.082   2.68
 3.08 Intr + 121944 122054  111  2  0  131   93   250 0.998  30.38
 3.09 Intr + 122148 122230   83  2  2  103   96    40 0.996   4.74
 3.10 Intr + 124580 124756  177  2  0  111   60    38 0.821   2.33
 3.11 Intr + 125486 125514   29  2  2   72   92    28 0.734  -0.64
 3.12 Intr + 127000 127091   92  2  2   64   42   125 0.606   5.21
 3.13 Term + 129606 129806  201  2  0   95   44   252 0.968  18.89
 3.14 PlyA + 129949 129954    6                               1.05

 4.11 PlyA - 130070 130065    6                               1.05
 4.10 Term - 132500 132405   96  2  0   95   42   167 0.957  10.77
 4.09 Intr - 133315 133235   81  1  0  121   80    79 0.999  10.23
 4.08 Intr - 135958 135889   70  0  1   33   98    34 0.388  -1.92
 4.07 Intr - 137593 137535   59  1  2   92   87    80 0.274   5.98
 4.06 Intr - 147229 147141   89  2  2   79   50    60 0.147   0.99
 4.05 Intr - 150880 150765  116  0  2   80   96    62 0.301   6.29
 4.04 Intr - 169628 169562   67  0  1   79   87    33 0.279   0.26
 4.03 Intr - 169871 169773   99  0  0  103   43    30 0.345   0.08
 4.02 Intr - 171858 171743  116  2  2   96   98    83 0.601  10.19
 4.01 Init - 178250 178219   32  2  2   86   61    50 0.512   1.54
 4.00 Prom - 179493 179454   40                              -2.76

 5.04 PlyA - 180497 180492    6                               1.05
 5.03 Term - 180824 180766   59  0  2   68   51    68 0.795  -1.05
 5.02 Intr - 181962 181905   58  0  1   96   84    31 0.918   1.96
 5.01 Init - 182092 182024   69  1  0   81   86    89 0.940   9.05
 5.00 Prom - 193437 193398   40                              -5.06

 6.00 Prom + 204586 204625   40                              -4.06
 6.01 Init + 208569 208607   39  2  0   77   87    33 0.917   2.28
 6.02 Term + 208698 208820  123  2  0   63   32   126 0.946   2.88
 6.03 PlyA + 210223 210228    6                               1.05

 7.00 Prom + 213597 213636   40                              -3.86
 7.01 Sngl + 219540 219938  399  2  0   74   48   280 0.738  18.87
 7.02 PlyA + 220168 220173    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  22757  22838   82  1  1   73   92    75 0.907   7.53
S.002 Intr +  24747  24883  137  1  2   47   93    29 0.925  -0.41
S.003 Term + 105827 105985  159  1  0   60   41   138 0.816   4.24
S.004 Init - 119039 118978   62  2  2   92   37   116 0.846   5.70
S.005 Init + 121226 121288   63  1  0   56   72    98 0.893   4.15


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594f:4287630_4517432|GENSCAN_predicted_peptide_1|917_aa
MRNPEGLTVEIPSLPYSLSEPQPPRSDLWATTPHLSASARQRFQPAAGSTWTRRRQPSAA
ATCLSGFAVQNSLLNHPARLRTAATPPPVEVTPTEAGRRFRQAKGALSSPEWLSMDPVAT
HSCHLLQQLHEQRIQGLLCDCMLVVKGVCFKAHKNVLAAFSQYFRSLFQNSSSQKNDVFH
LDVKNVSGIGQILDFMYTSHLDLNQDNIQVMLDTAQCLQVQNVLSLCHTFLKSATVVQPP
GMPCNSTLSLQSTLTPDATCVISENYPPHLLQECSADAQQNKTLDESHPHASPSVNRHHS
AGEISKQAPDTSDGSCTELPFKQPNYYYKLRNFYSKQYHKHAAGPSQERVVEQPFAFSTS
TDLTTVESQPCAVSHSECILESPEHLPSNFLAQPVNDSAPHPESDATCQQPVKQMRLKKA
IHLKKLNFLKSQKYAEQVSEPKSDDGLTKRLESASKNTLEKASSQSAEEKESEEVVSCEN
FNCISETERPEDPAALEDQSQTLQSQRQYACELCGKPFKHPSNLELHKRSHTGEKPFECN
ICGKHFSQAGNLQTHLRRHSGEKPYICEICGKRLAPSTLLPVLGLYVNQATYSIIWWLCQ
DNRHQPGLCQSRSSVVMLNRTVSDLVLCKTEEESVMKSGFSNFSNLKEHKKTHTADKVFT
CDECGKSFNMQRKLVKHRIRHTGERPYSCSACGKCFGGSGDLRRHVRTHTGEKPYTCEIC
NKCFTRSAVLRRHKKMHCKAGDESPDVLEELSQAIETSDLEKSQSSDSFSQDTSVTLMPV
SVKLPVHPVENSVAEFDSHSGGSYCKLRSMIQPHGVSDQEKLSLDPGKLAKPQMQQTQPQ
AYAYSDVDTPAGGEPLQADGMAMIRSSLAALDNHGGDPLGSRASSTTYRNSEGQFFSSMT
LWGLAMKTLQNENELDQ

>gi568815594f:4287630_4517432|GENSCAN_predicted_CDS_1|2754_bp
atgcgtaacccagaggggctgacggtggaaatcccgtccctcccctactcactctctgag
ccccagcctcccaggtcggacctctgggccaccacccctcacctctcagccagcgcccgc
caacggtttcaaccggccgcggggagcacgtggactcgccgccgccagcccagcgccgca
gctacctgcctctcaggcttcgcggtgcagaattcgcttctgaaccacccagcgcgcctg
cgcaccgcggccacgccccccccagtggaagtgacgccaacggaagcaggaaggcggttc
cggcaagccaagggggcgttgtcgtcacctgaatggttgagcatggaccctgttgctacc
cacagctgccatctgctccagcaactgcatgagcagcgaatccaaggcctgctttgtgac
tgtatgttggtggtaaaaggagtctgctttaaagcgcataagaatgtcctggcagcattc
agccagtattttaggagcctctttcagaattcttcaagccagaagaatgatgtttttcac
ttggatgttaaaaatgtcagtggcatagggcagatcctggacttcatgtacacttctcat
ctagatcttaaccaggacaatatacaagtaatgctggacacagcacagtgtttgcaagtt
caaaatgttctgagtctgtgtcacacatttttaaaatcagccactgtagtacagccacct
ggcatgccttgtaatagtacattgtctctacaaagcaccctgaccccagatgccacttgt
gttatcagtgaaaactacccccctcatttactgcaggaatgttcagcagatgcacagcag
aacaaaacgttggatgaatcgcatccgcatgcttcaccatcagttaatcgtcatcactcc
gcaggtgaaatctcaaaacaagctcctgatacttcagatggcagctgcacagaactgcct
ttcaaacagccaaattactattacaaactcagaaacttttacagtaagcagtaccataaa
cacgcagctggtcccagtcaggagagagttgttgagcagccttttgctttcagcacctct
acagaccttaccacggtagagagccagccttgtgccgtcagtcattctgaatgcatcctg
gagtctcccgagcacttaccttccaacttcctggcccagcctgtgaatgactctgcccca
caccctgagtcagacgccacatgccaacaacctgtcaagcagatgaggctcaaaaaggcc
attcatctgaagaagctcaatttcctgaagtcacagaaatacgcagagcaagtatctgaa
cccaagtcagatgatggtttgacaaagaggttggaatctgctagtaaaaataccctagag
aaagctagcagccaaagtgctgaagaaaaagaaagtgaagaagtcgtcagttgtgagaat
tttaattgcattagtgagacggagaggcctgaagacccggctgccctggaagaccagtcc
cagacacttcagtcccagagacaatacgcgtgtgaattatgcgggaaaccttttaaacac
ccaagcaacttggagcttcacaaacggtctcatacaggtgagaaaccttttgaatgtaac
atttgtgggaaacatttctctcaggcaggtaacttgcagactcacttacgacggcattct
ggtgaaaaaccatacatctgcgagatctgtggaaagaggctggcaccctcgaccctcctt
cctgtccttgggctgtacgtcaatcaggccacgtactccatcatctggtggttgtgccag
gacaacaggcatcagccaggactatgccagtcacgaagctctgtagtgatgctgaaccgt
acggtatctgatcttgtgctctgtaaaactgaggaagaaagtgtgatgaaatcagggttt
agtaacttcagtaatttgaaggagcacaaaaagacacacacggctgataaagtcttcacc
tgtgatgagtgtggaaagtcttttaatatgcaaaggaagttagtaaagcacagaattcgg
cacacgggggagcggccttacagctgctctgcctgcgggaaatgttttgggggatcaggt
gacctccgcaggcatgtccgcactcacactggggagaagccgtacacatgtgagatctgt
aacaagtgctttacccgctctgcggtgctccggcggcacaagaagatgcactgcaaagct
ggtgacgagagcccagatgtgctggaggagctcagccaagccatcgagacctccgacctc
gagaaatctcagagctcagactctttctcccaagacacgtctgtgacgctgatgccagtg
tcggttaaactccctgtccacccagtggaaaattctgtggcagaatttgatagccactct
ggcggctcctattgtaagttacggtccatgatccaacctcatggagttagtgaccaggag
aagctgagtttggatcctggtaaacttgccaagccccagatgcagcagacacagcctcag
gcctatgcttactcggatgtggacaccccagccggtggcgaaccactgcaggccgatggc
atggccatgatccgttcctctctggctgctttggacaaccacggcggtgaccccctgggc
agtcgagcatcttccaccacttataggaactcagagggtcagtttttctccagcatgact
ctctgggggctagcgatgaagacgctgcagaatgaaaacgagttagaccagtga

>gi568815594f:4287630_4517432|GENSCAN_predicted_peptide_2|394_aa
MAARAKGTGFPSFSFTASPPIPAKHQRREIVEIKTQDKEVEEKTAGPEGHYHLDVETSSG
PECLAAQLFIGYKTRGQGRSQSCCQCFGGDASAGRMFFRERLICVAAVLQNVECAGVSGI
GYFWCVLRLADFKNEATDPRGVKPQTFTVSVTIKLVGTQRVSSSKIYCEEPKIKASTSCK
GTPTVCSCWLRGVLFWVEALFKYKPTNPESTLQPPVFLGSTAPATSTCPHQLRAGTPRAS
CLHTSPLMQNLNPGPVQDSHQKGHIDEEAHVLPGVTLKHQHIFTNQKYGADVNMFEAPYS
LRSQESGTPPSNSLDSGVRVICVTARLETVHWKERGVHYEDRVCNRCGDGGHRGSDKGRG
KPSQAYSLWTASVGHESQPIAPNPVRSMVFMKLT

>gi568815594f:4287630_4517432|GENSCAN_predicted_CDS_2|1185_bp
atggccgcacgtgccaagggaacaggattcccgtccttctcattcactgcatctcctcca
atcccagcaaagcaccagagacgagagattgtagaaataaagacacaagacaaagaggta
gaagaaaagacagctgggcccgagggccactaccacctagacgtggagaccagtagtggc
cccgaatgcctggctgcacagttatttattggatacaagacaagggggcagggtcgaagc
cagagttgttgtcagtgctttggtggagacgccagtgctgggcgaatgttcttccgagag
cgccttatctgcgttgctgcagtcctgcagaatgtcgagtgtgctggtgtgtctggaatt
ggttacttctggtgcgttcttcgtctcgctgacttcaagaatgaagccacggaccctcgc
ggagtgaagccacagaccttcacagtgagtgttacaataaagctagtggggacccaaaga
gtgagcagcagcaagatttattgtgaagagccaaagatcaaagcttccacatcctgcaag
gggaccccaacggtttgcagctgctggctcagaggagtcctcttctgggtagaggcactt
ttcaaatacaaaccaaccaacccagagtccacgctgcagccacctgtttttctaggctct
actgctccagccacatctacctgtcctcatcagctcagggcaggcacccccagagcatcg
tgtctgcacacctcacctctcatgcagaatctgaatcctgggccagttcaggactcacac
cagaaagggcacattgatgaagaagcacatgtcttacctggggtgaccctgaagcaccaa
cacatcttcaccaaccaaaaatatggggccgatgtcaacatgttcgaagcaccttattct
ctaagatctcaggagagtggaactccgccctccaactctctagactctggagtgagagtt
atctgtgtgacagccagattagaaacagtgcactggaaagagcgaggggtgcactatgag
gatcgcgtctgcaaccgctgtggggacggcggccacagaggcagcgacaagggcaggggc
aagcctagccaagcctacagcctgtggacagccagtgtggggcacgagtcccagcccata
gcacccaatccagttcggtctatggtgttcatgaagctgacctga

>gi568815594f:4287630_4517432|GENSCAN_predicted_peptide_3|510_aa
MVKLGNNFAEKGTKQPLLEDGFDTIPLMTPLDVNQLQFPPPDKVVVKTKTEYEPDRKKGK
ARPPQIAEFTVSITEGVTERFKNLKAQKTMGDYAHPNRLAAGSRSPASSPCLYLLWLSEK
AMYAWGVQGNSPVDPELGSGPRPERADGSTASAEAAHASLSRRVCDAAATLVVDTGFFDA
SGPWHKPFLPAGLPFPSSLEASSLCQMCESQPCPRGLHLWEDELKGEAPSGLAAIIARQP
SLAGLLPLPLAATCLRRLRLLSPASSACFITALRSAALAQVSVLVLFALAFLTCVVFLVV
YKVYKYDRACPDGFVLKLAHGQALEQQGASVRSVPVEGPPGEQGREEGVAKTAFPILQAQ
VPLDTWPGWEMTQEMKPQSCVRLQMRLAATMEGAWHLLFKRRSRRWNTAESQSECIQKPF
EVDAVISPFYQWLEGVQRLFVEPKNTQCIPEGLESYYAEQDSSAREKFYTVINHYNLAKQ
SITRSVSPWMSVLSEEKLSEQETEAAEKSA

>gi568815594f:4287630_4517432|GENSCAN_predicted_CDS_3|1533_bp
atggtgaagttggggaacaatttcgcagagaagggcaccaagcagccgctgctggaggat
ggcttcgacaccattcccctgatgacgcccctcgatgtcaatcagctgcagttcccgccc
ccggataaggtggtcgtgaaaactaagaccgagtatgaacctgaccgcaagaaagggaaa
gcacgtcctccccaaattgctgagttcaccgtcagcatcacggagggtgtcaccgagagg
tttaagaacctgaaggctcagaagaccatgggtgattatgctcatcccaatagactggct
gctggcagcagaagccctgcctcatctccctgcctctacctcctgtggctgtctgagaag
gcgatgtatgcatggggtgtgcagggcaactcccctgtggaccctgagctgggcagtggc
cccagacctgagagggcagacgggagcacagccagtgctgaggccgctcacgcttccctg
tccagacgggtgtgcgatgctgcagccacactggtcgtagacactgggttttttgatgct
tcaggcccgtggcacaaaccctttcttcctgctggactcccatttccctcctccctggag
gcatcttctctgtgccagatgtgtgaatcacagccctgccctcgggggctccatctgtgg
gaagatgaactgaaaggagaggcaccatcagggcttgcggctatcatcgccaggcagccc
tccctggctgggctcctgccactgcctctggctgccacgtgcctcagacggctgcgcctt
ctttctccggccagctctgcctgcttcatcacagctctgcgctctgctgccctggcccag
gtctccgtgttggtcctcttcgccctggccttcctcacctgcgtcgtcttcctggttgtc
tacaaggtgtacaagtatgaccgcgcctgccccgatgggttcgtcctcaagctggcccac
ggacaggccttagagcagcagggggccagtgtcaggagtgtccctgtggaaggcccacct
ggagagcagggcagggaggagggggtggctaaaactgccttccctatcctgcaagcccaa
gtcccgctggatacctggcctgggtgggagatgacccaggagatgaagccccagtcctgt
gtccggctgcagatgagactggcggccacaatggaaggggcctggcaccttttgtttaaa
aggcgctccaggcgctggaacacagccgagagccagtcagaatgcatccagaagcccttt
gaggtggatgctgttatatccccattttaccagtggttagagggtgtacagaggctcttc
gtggagcccaagaacacccagtgcatcccagaaggcttggagagctactacgcggagcaa
gactccagtgcccgggagaaattttacacagtcataaaccactacaacctggccaagcag
agcatcacgcgctccgtatcgccctggatgtcagttctgtcagaagagaagctgtccgag
caggagactgaagcggctgagaagtcagcttag

>gi568815594f:4287630_4517432|GENSCAN_predicted_peptide_4|274_aa
MVVPAFMELLSHTMSEYGRMTDTERDQIDQDAQIFMRTCSEAIQQLRTEAHKEIHSQQVK
EHRTAVLDFIEDYLKSISFSFKGVCKLYSEQRAIRVKRVVDKKRLSKLEPEPNTKTREST
SSEKVSQSPSKDSEENPATEERPEKILAETQPELGTWGDGKGEDELSPEEIQMFEQENQR
LIGEMNSLFDEVRQIEGRVVEISRLQEIFTEKVLQQEAEIDSIHQLVVGATENIKEGNED
IREAIKNNAGFRVWILFFLVMCSFSLLFLDWYDS

>gi568815594f:4287630_4517432|GENSCAN_predicted_CDS_4|825_bp
atggttgtccctgccttcatggagctgctaagccataccatgtctgaatatgggaggatg
acagacacagaacgagaccagatagaccaggatgcccagatattcatgaggacctgttca
gaagcaattcagcaactacgaacagaagctcacaaggagatacattcccagcaagtgaag
gagcacaggaccgctgttttggatttcattgaagattacttgaaaagtatttcattttct
tttaaaggagtatgtaaactttactcagaacagagagccatccgagttaaaagagtggtg
gataagaaaagattatctaagctggaaccagaaccaaatacaaagacaagagaatccaca
tcttctgagaaagtttcacagagtccttcaaaagactctgaagaaaaccctgccactgaa
gaacgtccagaaaaaattttggctgaaacacaacctgaattgggaacgtggggagatggc
aaaggcgaagatgagttatccccagaagaaatacaaatgtttgaacaggaaaatcagcga
ctaattggtgaaatgaacagcttgtttgatgaagtgaggcaaatcgaagggagagtggtt
gagatttccagactccaagagatattcacggaaaaggttttgcaacaggaagctgagatt
gacagcattcaccagttagttgtgggggcaactgaaaatatcaaggaaggcaacgaagac
ataagagaggccattaaaaacaacgctggcttccgcgtgtggatcctcttcttcctcgtg
atgtgctccttctccttgctcttcctcgactggtacgacagctag

>gi568815594f:4287630_4517432|GENSCAN_predicted_peptide_5|61_aa
MNAAVPEKWCECILYVITHTASQFIHSAVQAYPLSHPSHRFSAIIAGWRHVSNGRVVDYP
P

>gi568815594f:4287630_4517432|GENSCAN_predicted_CDS_5|186_bp
atgaatgcagcagtacctgagaagtggtgcgagtgcatcctttatgtcatcactcacacc
gcctctcagtttatacattcagcggtacaagcatatcctttatctcatccctcacaccgc
ttctcagctatcatcgcaggctggcgacatgtcagcaatggccgggttgtagactacccg
ccttga

>gi568815594f:4287630_4517432|GENSCAN_predicted_peptide_6|53_aa
MNTDFLNSNASGKSSEILCLGYENNLTADHCLLLNHCSQPAIKSSSFYIFKGS

>gi568815594f:4287630_4517432|GENSCAN_predicted_CDS_6|162_bp
atgaacactgatttcttaaatagcaacgccagtggtaagtccagtgagatcctgtgtctt
ggttatgagaacaacctcacagctgatcactgtctcctgctgaaccactgcagccaaccc
gccatcaagtcctccagcttctacatctttaagggctcctaa

>gi568815594f:4287630_4517432|GENSCAN_predicted_peptide_7|132_aa
MTLPLDAQQQLSVSHAIMRVNNPYFTVYYKESGISQALLELEKNSDLKAQLTELNIMAAK
EIEVGGGQKAITIFVPVPPLKSFQKIQVRLVCELEKKFSGKHIIFIAQRRILPKPIRKSR
TKNKQKRPRSAL

>gi568815594f:4287630_4517432|GENSCAN_predicted_CDS_7|399_bp
atgacactccctcttgatgctcagcagcagctctcagtcagccatgcaattatgagggta
aacaacccatactttacagtgtactataaagagtccggcatctcccaggctcttctggag
ctggaaaagaactcggacctcaaggctcagctcacagagctgaatattatggcagccaag
gaaattgaagttggtggtggtcagaaagctatcacaatctttgttcccgttcctccactg
aaatctttccagaaaatccaagtccggctagtatgcgaactggagaaaaagttcagtgga
aagcatattatctttatcgctcagaggagaattctgcctaagccaattcgaaaaagccgc
acaaaaaataagcaaaagcgtcccaggagtgcactctga