Result of FASTA (omim) for pF1KB8211
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8211, 363 aa
  1>>>pF1KB8211 363 - 363 aa - 363 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.2325+/-0.000422; mu= -17.6783+/- 0.026
 mean_var=601.7033+/-126.003, 0's: 0 Z-trim(124.9): 117  B-trim: 0 in 0/60
 Lambda= 0.052286
 statistics sampled from 47381 (47551) to 47381 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.558), width:  16
 Scan time:  9.640

The best scores are:                                      opt bits E(85289)
NP_001009998 (OMIM: 607391) single-stranded DNA-bi ( 363) 2596 210.0   7e-54
XP_006722731 (OMIM: 607391) PREDICTED: single-stra ( 413) 2540 205.8 1.4e-52
XP_016881925 (OMIM: 607391) PREDICTED: single-stra ( 496) 2540 205.9 1.6e-52
XP_016881926 (OMIM: 607391) PREDICTED: single-stra ( 385) 2469 200.4 5.6e-51
XP_016881924 (OMIM: 607391) PREDICTED: single-stra ( 507) 2423 197.1 7.5e-50
XP_016881923 (OMIM: 607391) PREDICTED: single-stra ( 518) 2413 196.3 1.3e-49
NP_001009955 (OMIM: 607390) single-stranded DNA-bi ( 361) 1985 163.9 5.3e-40
NP_036578 (OMIM: 607389) single-stranded DNA-bindi ( 361) 1966 162.4 1.4e-39
NP_001243661 (OMIM: 607389) single-stranded DNA-bi ( 369) 1944 160.8 4.5e-39
XP_016864794 (OMIM: 607389) PREDICTED: single-stra ( 357) 1878 155.8 1.4e-37
NP_060540 (OMIM: 607390) single-stranded DNA-bindi ( 368) 1871 155.3 2.1e-37
XP_016864793 (OMIM: 607389) PREDICTED: single-stra ( 365) 1856 154.1 4.5e-37
XP_016864795 (OMIM: 607389) PREDICTED: single-stra ( 328) 1788 149.0 1.5e-35
NP_001332815 (OMIM: 607389) single-stranded DNA-bi ( 336) 1766 147.3 4.7e-35
NP_116016 (OMIM: 607391) single-stranded DNA-bindi ( 385) 1757 146.7 8.3e-35
XP_005259847 (OMIM: 607391) PREDICTED: single-stra ( 407) 1757 146.7 8.6e-35
XP_006722729 (OMIM: 607391) PREDICTED: single-stra ( 435) 1701 142.5 1.7e-33
XP_006722728 (OMIM: 607391) PREDICTED: single-stra ( 457) 1701 142.5 1.7e-33
XP_016881922 (OMIM: 607391) PREDICTED: single-stra ( 518) 1701 142.6 1.9e-33
XP_016881921 (OMIM: 607391) PREDICTED: single-stra ( 529) 1701 142.6 1.9e-33
XP_016881920 (OMIM: 607391) PREDICTED: single-stra ( 540) 1701 142.6   2e-33
XP_016856388 (OMIM: 607390) PREDICTED: single-stra ( 251) 1299 112.0 1.5e-24
XP_016856387 (OMIM: 607390) PREDICTED: single-stra ( 278) 1270 109.8 7.5e-24
XP_016856386 (OMIM: 607390) PREDICTED: single-stra ( 278) 1270 109.8 7.5e-24
NP_663768 (OMIM: 607390) single-stranded DNA-bindi ( 388) 1270 110.0 9.5e-24
XP_016864796 (OMIM: 607389) PREDICTED: single-stra ( 327) 1239 107.5 4.3e-23
NP_001243664 (OMIM: 607389) single-stranded DNA-bi ( 331) 1239 107.6 4.3e-23
XP_006710608 (OMIM: 607390) PREDICTED: single-stra ( 341) 1172 102.5 1.5e-21
XP_016864798 (OMIM: 607389) PREDICTED: single-stra ( 257) 1111 97.8 2.9e-20
XP_016864797 (OMIM: 607389) PREDICTED: single-stra ( 257) 1111 97.8 2.9e-20
XP_016864799 (OMIM: 607389) PREDICTED: single-stra ( 257) 1111 97.8 2.9e-20
NP_001243665 (OMIM: 607389) single-stranded DNA-bi ( 298) 1061 94.1 4.4e-19
NP_001243662 (OMIM: 607389) single-stranded DNA-bi ( 341)  888 81.1 4.1e-15
NP_001243663 (OMIM: 607389) single-stranded DNA-bi ( 339)  744 70.2 7.6e-12


>>NP_001009998 (OMIM: 607391) single-stranded DNA-bindin  (363 aa)
 initn: 2596 init1: 2596 opt: 2596  Z-score: 1088.3  bits: 210.0 E(85289): 7e-54
Smith-Waterman score: 2596; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)

               10        20        30        40        50        60
pF1KB8 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGMT
              310       320       330       340       350       360

          
pF1KB8 MSV
       :::
NP_001 MSV
          

>>XP_006722731 (OMIM: 607391) PREDICTED: single-stranded  (413 aa)
 initn: 2645 init1: 2540 opt: 2540  Z-score: 1064.8  bits: 205.8 E(85289): 1.4e-52
Smith-Waterman score: 2540; 99.7% identity (99.7% similar) in 356 aa overlap (1-356:1-356)

               10        20        30        40        50        60
pF1KB8 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGMT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :    
XP_006 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESVSDCVD
              310       320       330       340       350       360

                                                            
pF1KB8 MSV                                                  
                                                            
XP_006 SPPAAASGRRGWRAGPGGAAGGPEQDRDRGGPVLARDDHERVMGRQPRASLRA
              370       380       390       400       410   

>>XP_016881925 (OMIM: 607391) PREDICTED: single-stranded  (496 aa)
 initn: 2592 init1: 2540 opt: 2540  Z-score: 1063.8  bits: 205.9 E(85289): 1.6e-52
Smith-Waterman score: 2540; 99.7% identity (99.7% similar) in 356 aa overlap (1-356:1-356)

               10        20        30        40        50        60
pF1KB8 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAME
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGMT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :    
XP_016 PHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESVSDCVD
              310       320       330       340       350       360

                                                                   
pF1KB8 MSV                                                         
                                                                   
XP_016 SPPAAASGRRGWRAGPGGAAGGPEQDRDRGGPGGGAAAASFPSPQPLPTPHHLPLLFHRP
              370       380       390       400       410       420

>>XP_016881926 (OMIM: 607391) PREDICTED: single-stranded  (385 aa)
 initn: 2469 init1: 2469 opt: 2469  Z-score: 1036.2  bits: 200.4 E(85289): 5.6e-51
Smith-Waterman score: 2469; 99.7% identity (100.0% similar) in 344 aa overlap (20-363:42-385)

                          10        20        30        40         
pF1KB8            MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEK
                                     .:::::::::::::::::::::::::::::
XP_016 YTFAVWSAMLSVAANVCGWVYNNVGGRLHLRLALYVYEYLLHIGAQKSAQTFLSEIRWEK
              20        30        40        50        60        70 

      50        60        70        80        90       100         
pF1KB8 NITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPG
              80        90       100       110       120       130 

     110       120       130       140       150       160         
pF1KB8 DTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHP
             140       150       160       170       180       190 

     170       180       190       200       210       220         
pF1KB8 SMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSI
             200       210       220       230       240       250 

     230       240       250       260       270       280         
pF1KB8 PYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGP
             260       270       280       290       300       310 

     290       300       310       320       330       340         
pF1KB8 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHP
             320       330       340       350       360       370 

     350       360   
pF1KB8 FPSESYSPGMTMSV
       ::::::::::::::
XP_016 FPSESYSPGMTMSV
             380     

>>XP_016881924 (OMIM: 607391) PREDICTED: single-stranded  (507 aa)
 initn: 2471 init1: 2419 opt: 2423  Z-score: 1015.9  bits: 197.1 E(85289): 7.5e-50
Smith-Waterman score: 2423; 95.8% identity (96.9% similar) in 357 aa overlap (4-356:15-367)

                              10        20        30        40     
pF1KB8            MYAKGGK---GS-AVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEI
                     .::.   :. :::     : .:::::::::::::::::::::::::
XP_016 MDAGGTNEEVNERRRGGRMRFGARAVP----MRTRLALYVYEYLLHIGAQKSAQTFLSEI
               10        20            30        40        50      

          50        60        70        80        90       100     
pF1KB8 RWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGS
         60        70        80        90       100       110      

         110       120       130       140       150       160     
pF1KB8 MAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAPGDTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRA
        120       130       140       150       160       170      

         170       180       190       200       210       220     
pF1KB8 QGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QGHPSMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPS
        180       190       200       210       220       230      

         230       240       250       260       270       280     
pF1KB8 GNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNSIPYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPL
        240       250       260       270       280       290      

         290       300       310       320       330       340     
pF1KB8 GPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPGPEGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGT
        300       310       320       330       340       350      

         350       360                                             
pF1KB8 FLHPFPSESYSPGMTMSV                                          
       ::::::::: :                                                 
XP_016 FLHPFPSESVSDCVDSPPAAASGRRGWRAGPGGAAGGPEQDRDRGGPGGGAAAASFPSPQ
        360       370       380       390       400       410      

>>XP_016881923 (OMIM: 607391) PREDICTED: single-stranded  (518 aa)
 initn: 2462 init1: 2410 opt: 2413  Z-score: 1011.8  bits: 196.3 E(85289): 1.3e-49
Smith-Waterman score: 2413; 99.4% identity (99.7% similar) in 337 aa overlap (20-356:42-378)

                          10        20        30        40         
pF1KB8            MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEK
                                     .:::::::::::::::::::::::::::::
XP_016 YTFAVWSAMLSVAANVCGWVYNNVGGRLHLRLALYVYEYLLHIGAQKSAQTFLSEIRWEK
              20        30        40        50        60        70 

      50        60        70        80        90       100         
pF1KB8 NITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPG
              80        90       100       110       120       130 

     110       120       130       140       150       160         
pF1KB8 DTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTMAAGSMAAGFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHP
             140       150       160       170       180       190 

     170       180       190       200       210       220         
pF1KB8 SMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SMGGPMQRVTPPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSI
             200       210       220       230       240       250 

     230       240       250       260       270       280         
pF1KB8 PYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PYSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGP
             260       270       280       290       300       310 

     290       300       310       320       330       340         
pF1KB8 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHP
             320       330       340       350       360       370 

     350       360                                                 
pF1KB8 FPSESYSPGMTMSV                                              
       ::::: :                                                     
XP_016 FPSESVSDCVDSPPAAASGRRGWRAGPGGAAGGPEQDRDRGGPGGGAAAASFPSPQPLPT
             380       390       400       410       420       430 

>>NP_001009955 (OMIM: 607390) single-stranded DNA-bindin  (361 aa)
 initn: 1945 init1: 1055 opt: 1985  Z-score: 839.2  bits: 163.9 E(85289): 5.3e-40
Smith-Waterman score: 1985; 73.0% identity (91.8% similar) in 366 aa overlap (1-363:1-361)

               10        20        30        40        50        60
pF1KB8 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
       :.::: ::::::::.::::::::::::::::.::::::::::::::::::::::::::::
NP_001 MFAKG-KGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFL
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB8 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
       :::::::::::::::.::..::::.:::::.:::::::::::.:.. :.: : .: .  :
NP_001 HSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPG
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB8 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
       :::::::::. ::::: .:: .:::.:.::.:::::..:.:. : ::::.::: :::..:
NP_001 FFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDPT-RQQGHPNMGGSMQRMNP
     120       130       140       150       160        170        

                190       200       210       220        230       
pF1KB8 PRGMASVGP--QSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASP-SGNSIPYSSSSPG
       ::::. .::  :.::.::::::::: ::..:..:::::.  :: .: :.:::::::::::
NP_001 PRGMGPMGPGPQNYGSGMRPPPNSL-GPAMPGINMGPGAGRPWPNPNSANSIPYSSSSPG
      180       190       200        210       220       230       

       240       250       260       270       280       290       
pF1KB8 SYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMS
       .:.:::::::::::::::::.::::::.:.::..::.  :..:.:::.::: .:::..:.
NP_001 TYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMGGMG
       240       250       260       270       280       290       

       300       310       320       330       340       350       
pF1KB8 AMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSP
       .:::::.::::::::.:::::.::. ..:.:: :::::::::.  .:.::: : ...:::
NP_001 GMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGEL--GGNFLHSFQNDNYSP
       300       310       320       330       340         350     

       360   
pF1KB8 GMTMSV
       .:::::
NP_001 SMTMSV
         360 

>>NP_036578 (OMIM: 607389) single-stranded DNA-binding p  (361 aa)
 initn: 1846 init1: 1390 opt: 1966  Z-score: 831.5  bits: 162.4 E(85289): 1.4e-39
Smith-Waterman score: 1966; 73.7% identity (91.0% similar) in 365 aa overlap (1-363:1-361)

                10        20        30        40        50         
pF1KB8 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF
       ::.:: ...:::::::::::::::::::::::.:::::::::::::::::::::::::::
NP_036 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB8 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA
       ::::::::::::::::.:::.::::.:::::.:::::::::::.:.. ::: : .: .  
NP_036 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB8 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT
       ::::::::::.:::::: ::.:.:  .:.::::::::..:.:. : ::::.:::::::.:
NP_036 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT
              130       140       150       160        170         

     180       190       200       210       220        230        
pF1KB8 PPRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIPYSSSSPGS
       :::::. .:::.:::.:::: :.:.:::.:.::::::   :: .:.. :::::::.:::.
NP_036 PPRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGN
     180       190       200       210       220       230         

      240       250       260       270       280       290        
pF1KB8 YTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSA
       :.:::::::::::::::::.:::::..::::.:: .  : .: :::.::: .:::.....
NP_036 YVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGG
     240       250       260       270       280       290         

      300       310       320       330       340       350        
pF1KB8 MEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPG
       :: ::.::::::::::.. :.::. .. ::: ::::::::::  .:.::.:: ::::::.
NP_036 MESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEM--GGNFLNPFQSESYSPS
     300       310       320        330       340         350      

      360   
pF1KB8 MTMSV
       :::::
NP_036 MTMSV
        360 

>>NP_001243661 (OMIM: 607389) single-stranded DNA-bindin  (369 aa)
 initn: 1753 init1: 934 opt: 1944  Z-score: 822.4  bits: 160.8 E(85289): 4.5e-39
Smith-Waterman score: 1944; 72.4% identity (89.0% similar) in 373 aa overlap (1-363:1-369)

                10        20        30        40        50         
pF1KB8 MYAKG-GKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGF
       ::.:: ...:::::::::::::::::::::::.:::::::::::::::::::::::::::
NP_001 MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGF
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB8 LHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAA
       ::::::::::::::::.:::.::::.:::::.:::::::::::.:.. ::: : .: .  
NP_001 LHSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPP
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB8 GFFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVT
       ::::::::::.:::::: ::.:.:  .:.::::::::..:.:. : ::::.:::::::.:
NP_001 GFFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMT
              130       140       150       160        170         

     180       190               200       210       220        230
pF1KB8 PPRGMASVGPQS--------YGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIP
       :::::. .::::        :::.:::: :.:.:::.:.::::::   :: .:.. ::::
NP_001 PPRGMVPLGPQSDPWLSLQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIP
     180       190       200       210       220       230         

              240       250       260       270       280       290
pF1KB8 YSSSSPGSYTGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPE
       :::.:::.:.:::::::::::::::::.:::::..::::.:: .  : .: :::.::: .
NP_001 YSSASPGNYVGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSD
     240       250       260       270       280       290         

              300       310       320       330       340       350
pF1KB8 GPMAAMSAMEPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPF
       :::.....:: ::.::::::::::.. :.::. .. ::: ::::::::::  .:.::.::
NP_001 GPMGGLGGMESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEM--GGNFLNPF
     300       310       320       330        340         350      

              360   
pF1KB8 PSESYSPGMTMSV
        ::::::.:::::
NP_001 QSESYSPSMTMSV
        360         

>>XP_016864794 (OMIM: 607389) PREDICTED: single-stranded  (357 aa)
 initn: 1775 init1: 1319 opt: 1878  Z-score: 795.7  bits: 155.8 E(85289): 1.4e-37
Smith-Waterman score: 1878; 73.3% identity (90.7% similar) in 345 aa overlap (20-363:17-357)

               10        20        30        40        50        60
pF1KB8 MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSEIRWEKNITLGEPPGFL
                          .:::::::::::.::::::::::::::::::::::::::::
XP_016    MLVIPSALMYSFVLYWRLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFL
                  10        20        30        40        50       

               70        80        90       100       110       120
pF1KB8 HSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPVMGSMAPGDTMAAGSMAAG
       :::::::::::::::.:::.::::.:::::.:::::::::::.:.. ::: : .: .  :
XP_016 HSWWCVFWDLYCAAPERRETCEHSSEAKAFHDYSAAAAPSPVLGNIPPGDGMPVGPVPPG
        60        70        80        90       100       110       

              130       140       150       160       170       180
pF1KB8 FFQPFMSPRFPGGPRPTLRMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTP
       :::::::::.:::::: ::.:.:  .:.::::::::..:.:. : ::::.:::::::.::
XP_016 FFQPFMSPRYPGGPRPPLRIPNQALGGVPGSQPLLPSGMDPT-RQQGHPNMGGPMQRMTP
       120       130       140       150        160       170      

              190       200       210       220        230         
pF1KB8 PRGMASVGPQSYGGGMRPPPNSLAGPGLPAMNMGPGVRGPWASPSG-NSIPYSSSSPGSY
       ::::. .:::.:::.:::: :.:.:::.:.::::::   :: .:.. :::::::.:::.:
XP_016 PRGMVPLGPQNYGGAMRPPLNALGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNY
        180       190       200       210       220       230      

     240       250       260       270       280       290         
pF1KB8 TGPPGGGGPPGTPIMPSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAM
       .:::::::::::::::::.:::::..::::.:: .  : .: :::.::: .:::.....:
XP_016 VGPPGGGGPPGTPIMPSPADSTNSGDNMYTLMNAVPPGPNRPNFPMGPGSDGPMGGLGGM
        240       250       260       270       280       290      

     300       310       320       330       340       350         
pF1KB8 EPHHVNGSLGSGDMDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGM
       : ::.::::::::::.. :.::. .. ::: ::::::::::.  :.::.:: ::::::.:
XP_016 ESHHMNGSLGSGDMDSISKNSPNNMS-LSNQPGTPRDDGEMG--GNFLNPFQSESYSPSM
        300       310       320        330         340       350   

     360   
pF1KB8 TMSV
       ::::
XP_016 TMSV
           




363 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:36:43 2016 done: Fri Nov  4 10:36:44 2016
 Total Scan time:  9.640 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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