Result of FASTA (ccds) for
pF1KB8210
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8210, 376 aa
1>>>pF1KB8210 376 - 376 aa - 376 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3929+/-0.000914; mu= 15.8066+/- 0.054
mean_var=63.2928+/-13.049, 0's: 0 Z-trim(103.7): 32 B-trim: 0 in 0/50
Lambda= 0.161212
statistics sampled from 7497 (7520) to 7497 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.608), E-opt: 0.2 (0.231), width: 16
Scan time: 1.690
The best scores are: opt bits E(32554)
CCDS1277.1 NME7 gene_id:29922|Hs108|chr1 ( 376) 2516 594.1 6.6e-170
CCDS44274.1 NME7 gene_id:29922|Hs108|chr1 ( 340) 2265 535.7 2.3e-152
CCDS4197.1 NME5 gene_id:8382|Hs108|chr5 ( 212) 397 101.2 9.1e-22
CCDS77734.1 NME6 gene_id:10201|Hs108|chr3 ( 186) 317 82.5 3.2e-16
CCDS2763.1 NME6 gene_id:10201|Hs108|chr3 ( 194) 317 82.5 3.4e-16
CCDS3099.1 NME9 gene_id:347736|Hs108|chr3 ( 263) 278 73.5 2.4e-13
CCDS5452.1 NME8 gene_id:51314|Hs108|chr7 ( 588) 273 72.5 1.1e-12
CCDS82767.1 NME6 gene_id:10201|Hs108|chr3 ( 141) 261 69.5 2.1e-12
CCDS10443.1 NME3 gene_id:4832|Hs108|chr16 ( 169) 250 66.9 1.5e-11
CCDS10408.1 NME4 gene_id:4833|Hs108|chr16 ( 187) 250 67.0 1.6e-11
CCDS11579.1 NME1 gene_id:4830|Hs108|chr17 ( 152) 245 65.8 3e-11
CCDS11578.1 NME1 gene_id:4830|Hs108|chr17 ( 177) 245 65.8 3.4e-11
CCDS11580.1 NME2 gene_id:4831|Hs108|chr17 ( 152) 243 65.3 4.1e-11
>>CCDS1277.1 NME7 gene_id:29922|Hs108|chr1 (376 aa)
initn: 2516 init1: 2516 opt: 2516 Z-score: 3163.9 bits: 594.1 E(32554): 6.6e-170
Smith-Waterman score: 2516; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)
10 20 30 40 50 60
pF1KB8 MNHSERFVFIAEWYDPNASLLRRYELLFYPGDGSVEMHDVKNHRTFLKRTKYDNLHLEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MNHSERFVFIAEWYDPNASLLRRYELLFYPGDGSVEMHDVKNHRTFLKRTKYDNLHLEDL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FIGNKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAISKAGEIIEIINKAGFTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FIGNKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAISKAGEIIEIINKAGFTI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TKLKMMMLSRKEALDFHVDHQSRPFFNELIQFITTGPIIAMEILRDDAICEWKRLLGPAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TKLKMMMLSRKEALDFHVDHQSRPFFNELIQFITTGPIIAMEILRDDAICEWKRLLGPAN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 SGVARTDASESIRALFGTDGIRNAAHGPDSFASAAREMELFFPSSGGCGPANTAKFTNCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SGVARTDASESIRALFGTDGIRNAAHGPDSFASAAREMELFFPSSGGCGPANTAKFTNCT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 CCIVKPHAVSEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDMVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 CCIVKPHAVSEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDMVT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 EMYSGPCVAMEIQQNNATKTFREFCGPADPEIARHLRPGTLRAIFGKTKIQNAVHCTDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EMYSGPCVAMEIQQNNATKTFREFCGPADPEIARHLRPGTLRAIFGKTKIQNAVHCTDLP
310 320 330 340 350 360
370
pF1KB8 EDGLLEVQYFFKILDN
::::::::::::::::
CCDS12 EDGLLEVQYFFKILDN
370
>>CCDS44274.1 NME7 gene_id:29922|Hs108|chr1 (340 aa)
initn: 2265 init1: 2265 opt: 2265 Z-score: 2849.1 bits: 535.7 E(32554): 2.3e-152
Smith-Waterman score: 2265; 100.0% identity (100.0% similar) in 340 aa overlap (37-376:1-340)
10 20 30 40 50 60
pF1KB8 FVFIAEWYDPNASLLRRYELLFYPGDGSVEMHDVKNHRTFLKRTKYDNLHLEDLFIGNKV
::::::::::::::::::::::::::::::
CCDS44 MHDVKNHRTFLKRTKYDNLHLEDLFIGNKV
10 20 30
70 80 90 100 110 120
pF1KB8 NVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAISKAGEIIEIINKAGFTITKLKMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAISKAGEIIEIINKAGFTITKLKMM
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 MLSRKEALDFHVDHQSRPFFNELIQFITTGPIIAMEILRDDAICEWKRLLGPANSGVART
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MLSRKEALDFHVDHQSRPFFNELIQFITTGPIIAMEILRDDAICEWKRLLGPANSGVART
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 DASESIRALFGTDGIRNAAHGPDSFASAAREMELFFPSSGGCGPANTAKFTNCTCCIVKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DASESIRALFGTDGIRNAAHGPDSFASAAREMELFFPSSGGCGPANTAKFTNCTCCIVKP
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 HAVSEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDMVTEMYSGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HAVSEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDMVTEMYSGP
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB8 CVAMEIQQNNATKTFREFCGPADPEIARHLRPGTLRAIFGKTKIQNAVHCTDLPEDGLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CVAMEIQQNNATKTFREFCGPADPEIARHLRPGTLRAIFGKTKIQNAVHCTDLPEDGLLE
280 290 300 310 320 330
370
pF1KB8 VQYFFKILDN
::::::::::
CCDS44 VQYFFKILDN
340
>>CCDS4197.1 NME5 gene_id:8382|Hs108|chr5 (212 aa)
initn: 418 init1: 397 opt: 397 Z-score: 504.3 bits: 101.2 E(32554): 9.1e-22
Smith-Waterman score: 397; 44.7% identity (75.0% similar) in 132 aa overlap (92-223:13-144)
70 80 90 100 110 120
pF1KB8 IGNKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAISKAGEIIEIINKAGFTIT
:::::.:::: ..: :: .:: ..::::.
CCDS41 MEISMPPPQIYVEKTLAIIKPDIVDKEEEIQDIILRSGFTIV
10 20 30 40
130 140 150 160 170 180
pF1KB8 KLKMMMLSRKEALDFHVDHQSRPFFNELIQFITTGPIIAMEILRDDAICEWKRLLGPANS
. . . :: .. .:.:.. .. :: .: ....::..:: . : :: : .:::: ::
CCDS41 QRRKLRLSPEQCSNFYVEKYGKMFFPNLTAYMSSGPLVAMILARHKAISYWLELLGPNNS
50 60 70 80 90 100
190 200 210 220 230 240
pF1KB8 GVARTDASESIRALFGTDGIRNAAHGPDSFASAAREMELFFPSSGGCGPANTAKFTNCTC
::. .:.::..::: .::: :: ..::.: ::....::
CCDS41 LVAKETHPDSLRAIYGTDDLRNALHGSNDFAAAEREIRFMFPEVIVEPIPIGQAAKDYLN
110 120 130 140 150 160
250 260 270 280 290 300
pF1KB8 CIVKPHAVSEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDMVTE
CCDS41 LHIMPTLLEGLTELCKQKPADPLIWLADWLLKNNPNKPKLCHHPIVEEPY
170 180 190 200 210
>>CCDS77734.1 NME6 gene_id:10201|Hs108|chr3 (186 aa)
initn: 315 init1: 253 opt: 317 Z-score: 404.6 bits: 82.5 E(32554): 3.2e-16
Smith-Waterman score: 317; 38.1% identity (68.7% similar) in 134 aa overlap (94-223:14-146)
70 80 90 100 110
pF1KB8 NKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAISKAGEIIEIINKA----GFT
:::::::::... :.: ... :
CCDS77 MASILRSPQALQLTLALIKPDAVAHP-LILEAVHQQILSNKFL
10 20 30 40
120 130 140 150 160 170
pF1KB8 ITKLKMMMLSRKEALDFHVDHQSRPFFNELIQFITTGPIIAMEILRDDAICEWKRLLGPA
:.... .. ... :. .:..: :...:..:...::: :. . . ::: :. :.::.
CCDS77 IVRMRELLWRKEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPT
50 60 70 80 90 100
180 190 200 210 220 230
pF1KB8 NSGVARTDASESIRALFGTDGIRNAAHGPDSFASAAREMELFFPSSGGCGPANTAKFTNC
:: : .:::. :: ::..:: :: .::.::. :::
CCDS77 RVFRARHVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLR
110 120 130 140 150 160
240 250 260 270 280 290
pF1KB8 TCCIVKPHAVSEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDMV
CCDS77 CGPVCYSPEGGVHYVAGTGGLGPA
170 180
>>CCDS2763.1 NME6 gene_id:10201|Hs108|chr3 (194 aa)
initn: 298 init1: 253 opt: 317 Z-score: 404.3 bits: 82.5 E(32554): 3.4e-16
Smith-Waterman score: 317; 38.1% identity (68.7% similar) in 134 aa overlap (94-223:22-154)
70 80 90 100 110
pF1KB8 NKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAISKAGEIIEIINKA----GFT
:::::::::... :.: ... :
CCDS27 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHP-LILEAVHQQILSNKFL
10 20 30 40 50
120 130 140 150 160 170
pF1KB8 ITKLKMMMLSRKEALDFHVDHQSRPFFNELIQFITTGPIIAMEILRDDAICEWKRLLGPA
:.... .. ... :. .:..: :...:..:...::: :. . . ::: :. :.::.
CCDS27 IVRMRELLWRKEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPT
60 70 80 90 100 110
180 190 200 210 220 230
pF1KB8 NSGVARTDASESIRALFGTDGIRNAAHGPDSFASAAREMELFFPSSGGCGPANTAKFTNC
:: : .:::. :: ::..:: :: .::.::. :::
CCDS27 RVFRARHVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLR
120 130 140 150 160 170
240 250 260 270 280 290
pF1KB8 TCCIVKPHAVSEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDMV
CCDS27 CGPVCYSPEGGVHYVAGTGGLGPA
180 190
>>CCDS3099.1 NME9 gene_id:347736|Hs108|chr3 (263 aa)
initn: 271 init1: 169 opt: 278 Z-score: 353.2 bits: 73.5 E(32554): 2.4e-13
Smith-Waterman score: 278; 31.2% identity (62.4% similar) in 173 aa overlap (60-224:64-236)
30 40 50 60 70 80
pF1KB8 PGDGSVEMHDVKNHRTFLKRTKYDNLHLEDLFIGNKVNVFSRQLVLIDYGDQYTARQ--L
:: . : ...: . ...: . . .
CCDS30 VGLDLLHFALAEADRLDVLEKYRGKCEPTFLFYAIKDEALSDEDECVSHGKNNGEDEDMV
40 50 60 70 80 90
90 100 110 120 130 140
pF1KB8 GSRKEKTLALIKPDAIS--KAGEIIEIINKAGFTITKLKMMMLSRKEALDFHVDHQSRPF
.:.. :::.:::::.. :. ::: :..::: : . ... :. :. . ..
CCDS30 SSERTCTLAIIKPDAVAHGKTDEIIMKIQEAGFEILTNEERTMTEAEVRLFYQHKAGEEA
100 110 120 130 140 150
150 160 170 180 190 200
pF1KB8 FNELIQFITTGPIIAMEILR----DDAICEWKRLLGPANSGVARTDASESIRALFGTDGI
:..:.. . .:: . . : .:.. :. ..:: . .::: . ::.:: .::.
CCDS30 FEKLVHHMCSGPSHLLILTRTEGFEDVVTTWRTVMGPRDPNVARREQPESLRAQYGTEMP
160 170 180 190 200 210
210 220 230 240 250 260
pF1KB8 RNAAHGPDSFASAAREMELFFPSSGGCGPANTAKFTNCTCCIVKPHAVSEGLLGKILMAI
::.:: . .: ::. :.:::
CCDS30 FNAVHGSRDREDADRELALLFPSLKFSDKDTEAPQGESSTQPRLKITDLD
220 230 240 250 260
>>CCDS5452.1 NME8 gene_id:51314|Hs108|chr7 (588 aa)
initn: 443 init1: 233 opt: 273 Z-score: 341.5 bits: 72.5 E(32554): 1.1e-12
Smith-Waterman score: 454; 32.1% identity (63.5% similar) in 252 aa overlap (105-355:330-566)
80 90 100 110 120 130
pF1KB8 LIDYGDQYTARQLGSRKEKTLALIKPDAISKAGEIIEIINKAGFTITKLKMMMLSRKEAL
. ....::. : : . ....::.:::
CCDS54 MDAFFPDFKKMKSMKLEKTLALLRPNLFHERKDDVLRIIKDEDFKILEQRQVVLSEKEAQ
300 310 320 330 340 350
140 150 160 170 180 190
pF1KB8 DFHVDHQSRPFFNELIQFITTGPIIAMEILRDDAICEWKRLLGPANSGVARTDASESIRA
. ..... .::.::. .:.:: .:. .:::... ::.:::: . : ::. :
CCDS54 ALCKEYENEDYFNKLIENMTSGPSLALVLLRDNGLQYWKQLLGPRTVEEAIEYFPESLCA
360 370 380 390 400 410
200 210 220 230 240 250
pF1KB8 LFGTDGIR-NAAHGPDSFASAAREMELFFPSSGGCGPANTAKFTNCTCCIVKPHAVSEGL
:. :.. : .: ::. .: ::.. ::: .. : ..::::.::
CCDS54 QFAMDSLPVNQLYGSDSLETAEREIQHFFPLQSTLG-------------LIKPHATSEQR
420 430 440 450 460
260 270 280 290 300 310
pF1KB8 LGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDMVTEMYSGPCVAMEIQ
.:: ...:::... .. . . ..:..: : :.:.. . :: ..: .
CCDS54 E-QILKIVKEAGFDLTQVKKMFLTPEQIEKIYPKVTGK-DFYKDLLEMLSVGPSMVMILT
470 480 490 500 510 520
320 330 340 350 360 370
pF1KB8 QNNATKTFREFCGPADPEIARHLRPGTLRAIFGKTKIQNAVHCTDLPEDGLLEVQYFFKI
. ::. .:.. ::.::: :. : : ..:: :: .:..: ::
CCDS54 KWNAVAEWRRLMGPTDPEEAKLLSPDSIRAQFGISKLKNIVHGASNAYEAKEVVNRLFED
530 540 550 560 570 580
pF1KB8 LDN
CCDS54 PEEN
>>CCDS82767.1 NME6 gene_id:10201|Hs108|chr3 (141 aa)
initn: 270 init1: 253 opt: 261 Z-score: 336.1 bits: 69.5 E(32554): 2.1e-12
Smith-Waterman score: 261; 37.6% identity (69.3% similar) in 101 aa overlap (123-223:1-101)
100 110 120 130 140 150
pF1KB8 KTLALIKPDAISKAGEIIEIINKAGFTITKLKMMMLSRKEALDFHVDHQSRPFFNELIQF
.. .. ... :. .:..: :...:..:
CCDS82 MRELLWRKEDCQRFYREHEGRFFYQRLVEF
10 20 30
160 170 180 190 200 210
pF1KB8 ITTGPIIAMEILRDDAICEWKRLLGPANSGVARTDASESIRALFGTDGIRNAAHGPDSFA
...::: :. . . ::: :. :.::. :: : .:::. :: ::..:: :: .
CCDS82 MASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAPDSIRGSFGLTDTRNTTHGSDSVV
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB8 SAAREMELFFPSSGGCGPANTAKFTNCTCCIVKPHAVSEGLLGKILMAIRDAGFEISAMQ
::.::. :::
CCDS82 SASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEGGVHYVAGTGGLGPA
100 110 120 130 140
>>CCDS10443.1 NME3 gene_id:4832|Hs108|chr16 (169 aa)
initn: 216 init1: 136 opt: 250 Z-score: 321.0 bits: 66.9 E(32554): 1.5e-11
Smith-Waterman score: 250; 30.1% identity (65.4% similar) in 153 aa overlap (73-222:4-151)
50 60 70 80 90 100
pF1KB8 HRTFLKRTKYDNLHLEDLFIGNKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDA
::: ... . : :.. :.:. .:::.
CCDS10 MICLVLTIFANLFPAACTGAH-ERTFLAVKPDG
10 20 30
110 120 130 140 150 160
pF1KB8 ISK--AGEIIEIINKAGFTITKLKMMMLSRKEALDFHVDHQSRPFFNELIQFITTGPIIA
... .:::.. ... :: .. ::... :.. . ... . :::...:......::..:
CCDS10 VQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVA
40 50 60 70 80 90
170 180 190 200 210
pF1KB8 MEILRDDAICEWKRLLGPANSGVARTDASE-SIRALFGTDGIRNAAHGPDSFASAAREME
: :.. . :.: .: . :: .::. : . .: :: :: :: ::.
CCDS10 MVWQGLDVVRTSRALIGATNPA----DAPPGTIRGDFCIEVGKNLIHGSDSVESARREIA
100 110 120 130 140
220 230 240 250 260 270
pF1KB8 LFFPSSGGCGPANTAKFTNCTCCIVKPHAVSEGLLGKILMAIRDAGFEISAMQMFNMDRV
:.:
CCDS10 LWFRADELLCWEDSAGHWLYE
150 160
>>CCDS10408.1 NME4 gene_id:4833|Hs108|chr16 (187 aa)
initn: 249 init1: 134 opt: 250 Z-score: 320.3 bits: 67.0 E(32554): 1.6e-11
Smith-Waterman score: 250; 29.9% identity (68.6% similar) in 137 aa overlap (91-225:37-170)
70 80 90 100 110
pF1KB8 FIGNKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAISK--AGEIIEIINKAGF
.:.::. .:::.... .:..:. ... ::
CCDS10 RSALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGF
10 20 30 40 50 60
120 130 140 150 160 170
pF1KB8 TITKLKMMMLSRKEALDFHVDHQSRPFFNELIQFITTGPIIAMEILRDDAICEWKRLLGP
:.. .::.. .. . . : . .::. ::.....::..:: ... . ..:
CCDS10 TLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGH
70 80 90 100 110 120
180 190 200 210 220 230
pF1KB8 ANSGVARTDASESIRALFGTDGIRNAAHGPDSFASAAREMELFFPSSGGCGPANTAKFTN
..:. : : .::. :.. ::. :. :: .: ::..:.: ::
CCDS10 TDSAEA---APGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSS
130 140 150 160 170 180
240 250 260 270 280 290
pF1KB8 CTCCIVKPHAVSEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDM
CCDS10 IHPA
376 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:36:10 2016 done: Fri Nov 4 10:36:10 2016
Total Scan time: 1.690 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]