Result of FASTA (ccds) for pF1KB8176
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8176, 245 aa
  1>>>pF1KB8176 245 - 245 aa - 245 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7135+/-0.00102; mu= 12.0061+/- 0.062
 mean_var=63.7954+/-12.587, 0's: 0 Z-trim(102.7): 25  B-trim: 0 in 0/50
 Lambda= 0.160576
 statistics sampled from 7036 (7049) to 7036 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.593), E-opt: 0.2 (0.217), width:  16
 Scan time:  1.450

The best scores are:                                      opt bits E(32554)
CCDS1666.1 YWHAQ gene_id:10971|Hs108|chr2          ( 245) 1565 371.4 3.1e-103
CCDS6290.1 YWHAZ gene_id:7534|Hs108|chr8           ( 245) 1289 307.5 5.4e-84
CCDS13339.1 YWHAB gene_id:7529|Hs108|chr20         ( 246) 1287 307.0 7.5e-84
CCDS13901.1 YWHAH gene_id:7533|Hs108|chr22         ( 246) 1107 265.3 2.7e-71
CCDS288.1 SFN gene_id:2810|Hs108|chr1              ( 248) 1094 262.3 2.2e-70
CCDS5584.1 YWHAG gene_id:7532|Hs108|chr7           ( 247) 1091 261.6 3.5e-70
CCDS11001.1 YWHAE gene_id:7531|Hs108|chr17         ( 255)  999 240.3 9.4e-64


>>CCDS1666.1 YWHAQ gene_id:10971|Hs108|chr2               (245 aa)
 initn: 1565 init1: 1565 opt: 1565  Z-score: 1966.9  bits: 371.4 E(32554): 3.1e-103
Smith-Waterman score: 1565; 100.0% identity (100.0% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KB8 MEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VISSIEQKTDTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATNPESKVFYLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 VISSIEQKTDTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATNPESKVFYLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 MKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEECDAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 ILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEECDAA
              190       200       210       220       230       240

            
pF1KB8 EGAEN
       :::::
CCDS16 EGAEN
            

>>CCDS6290.1 YWHAZ gene_id:7534|Hs108|chr8                (245 aa)
 initn: 1289 init1: 1289 opt: 1289  Z-score: 1621.4  bits: 307.5 E(32554): 5.4e-84
Smith-Waterman score: 1289; 79.6% identity (94.3% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KB8 MEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWR
       :.:.::.::::::::::::::::.:::.:::::::::::::::::::::::::.:::.::
CCDS62 MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VISSIEQKTDTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATNPESKVFYLK
       :.:::::::. ..:: :. ..::::.:.:::.::. :: ::.:.:: ::.. ::::::::
CCDS62 VVSSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFYLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 MKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYE
       :::::.::::::: :::.:  .:.:: ::::::.::::::::::::::::::::::::::
CCDS62 MKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEECDAA
       :::.:: ::.::::::::::::::::.:.::::::::::::::::::::::. :.: .:.
CCDS62 ILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEAEAG
              190       200       210       220       230       240

            
pF1KB8 EGAEN
       ::.::
CCDS62 EGGEN
            

>>CCDS13339.1 YWHAB gene_id:7529|Hs108|chr20              (246 aa)
 initn: 1286 init1: 1286 opt: 1287  Z-score: 1618.8  bits: 307.0 E(32554): 7.5e-84
Smith-Waterman score: 1287; 81.6% identity (94.3% similar) in 245 aa overlap (1-245:3-246)

                 10        20        30        40        50        
pF1KB8   MEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSA
         :.:.::.::::::::::::::::. :::::::: :::::::::::::::::::.:::.
CCDS13 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSS
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB8 WRVISSIEQKTDTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATNPESKVFY
       :::::::::::. ..:: :. :.::::.:.::..::. :::::::::: :::.:::::::
CCDS13 WRVISSIEQKTERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFY
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KB8 LKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFY
       :::::::::::.::: ::... :..::: ::::::.::::::::::::::::::::::::
CCDS13 LKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFY
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KB8 YEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEECD
       :::::.:: ::.::::::::::::::::::.:::::::::::::::::::::.. :.: :
CCDS13 YEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGD
              190       200       210       220       230       240

      240     
pF1KB8 AAEGAEN
       :.:: ::
CCDS13 AGEG-EN
              

>>CCDS13901.1 YWHAH gene_id:7533|Hs108|chr22              (246 aa)
 initn: 968 init1: 647 opt: 1107  Z-score: 1393.5  bits: 265.3 E(32554): 2.7e-71
Smith-Waterman score: 1107; 71.4% identity (88.2% similar) in 245 aa overlap (2-242:3-245)

                10        20        30        40        50         
pF1KB8  MEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAW
         .. .:.:.:.::::::::::::. :::::: .  ::::.:::::::::::::.:::.:
CCDS13 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
               10        20        30        40        50        60

      60          70        80        90       100       110       
pF1KB8 RVISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESK
       ::::::::::  : ..:::. .: ::::.:.::...:. :: ::::.:: : ..   :::
CCDS13 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KB8 VFYLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFS
       ::::::::::.::::::: :. ...... :..::.:::.:::..::::::::::::::::
CCDS13 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KB8 VFYYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGE
       :::::: : :: :: ::: :::.:::::::::::::::::::::::::::::::::.  :
CCDS13 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
              190       200       210       220       230       240

         240     
pF1KB8 ECDAAEGAEN
       :  :.::   
CCDS13 E--AGEGN  
                 

>>CCDS288.1 SFN gene_id:2810|Hs108|chr1                   (248 aa)
 initn: 1089 init1: 764 opt: 1094  Z-score: 1377.1  bits: 262.3 E(32554): 2.2e-70
Smith-Waterman score: 1094; 71.8% identity (90.8% similar) in 238 aa overlap (1-236:1-238)

               10        20        30        40        50        60
pF1KB8 MEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWR
       ::.. ::::::::::::::.:::. ::...:.: ::: ::::::::::::::::.:.:::
CCDS28 MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWR
               10        20        30        40        50        60

               70          80        90       100       110        
pF1KB8 VISSIEQKTDT--SDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATNPESKVFY
       :.::::::..   :..:   ...::::::.::...: ::: :::..:: .: . ::.:::
CCDS28 VLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFY
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KB8 LKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFY
       :::::::.::::::: :::.:. ::....:::::.::::::: ::.:::::::::::::.
CCDS28 LKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFH
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KB8 YEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEECD
       ::: :.:: : .::::.::::.:.: ::.::::::::::::::::::::::.:.::::  
CCDS28 YEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEGG
              190       200       210       220       230       240

      240      
pF1KB8 AAEGAEN 
               
CCDS28 EAPQEPQS
               

>>CCDS5584.1 YWHAG gene_id:7532|Hs108|chr7                (247 aa)
 initn: 951 init1: 629 opt: 1091  Z-score: 1373.4  bits: 261.6 E(32554): 3.5e-70
Smith-Waterman score: 1091; 70.3% identity (87.4% similar) in 246 aa overlap (1-242:2-245)

                10        20        30        40        50         
pF1KB8  MEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAW
        ... .:.:::.::::::::::::. :: ::: .  ::::::::::::::::::.:::.:
CCDS55 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
               10        20        30        40        50        60

      60          70        80        90       100         110     
pF1KB8 RVISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANA--TNPESK
       ::::::::::  : ..::..... ::::.:.::...:  :: :::.::: :   :. :::
CCDS55 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KB8 VFYLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFS
       ::::::::::.::::::: :. :  ....:. ::.:: .:::..::::::::::::::.:
CCDS55 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KB8 VFYYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGE
       :::::: : :: :: :::::::.:::::::::::::::::::::::::::::::::.  .
CCDS55 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQ--Q
              190       200       210       220       230          

         240     
pF1KB8 ECDAAEGAEN
       . :..::   
CCDS55 DDDGGEGNN 
      240        

>>CCDS11001.1 YWHAE gene_id:7531|Hs108|chr17              (255 aa)
 initn: 1000 init1: 727 opt: 999  Z-score: 1258.0  bits: 240.3 E(32554): 9.4e-64
Smith-Waterman score: 999; 65.3% identity (85.2% similar) in 236 aa overlap (2-235:3-238)

                10        20        30        40        50         
pF1KB8  MEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAW
         .. .:. .:::::::::::.:.  :: :. . .::. :::::::::::::.:.::..:
CCDS11 MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASW
               10        20        30        40        50        60

      60        70          80        90       100       110       
pF1KB8 RVISSIEQKTDTS--DKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATNPESKVF
       :.::::::: ...  . ::..:..::. ::.::. ::  .:..:::.::  :.. :::::
CCDS11 RIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVF
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB8 YLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVF
       : :::::: ::::: : :.:::.. .::  ::. : ::.  :. ::::::::::::::::
CCDS11 YYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVF
              130       140       150       160       170       180

       180       190       200       210       220       230       
pF1KB8 YYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEEC
       ::::::.:. :: :::.:::.::::::::.:.::::::::::::::::::::::  :.  
CCDS11 YYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGE
              190       200       210       220       230       240

       240            
pF1KB8 DAAEGAEN       
                      
CCDS11 EQNKEALQDVEDENQ
              250     




245 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:16:39 2016 done: Fri Nov  4 10:16:39 2016
 Total Scan time:  1.450 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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