Result of FASTA (ccds) for pF1KB8153
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8153, 413 aa
  1>>>pF1KB8153 413 - 413 aa - 413 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7700+/-0.000827; mu= 8.9418+/- 0.050
 mean_var=198.0706+/-39.645, 0's: 0 Z-trim(115.1): 42  B-trim: 91 in 1/50
 Lambda= 0.091131
 statistics sampled from 15651 (15692) to 15651 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.482), width:  16
 Scan time:  2.330

The best scores are:                                      opt bits E(32554)
CCDS6719.1 HABP4 gene_id:22927|Hs108|chr9          ( 413) 2857 387.6 1.2e-107
CCDS30747.1 SERBP1 gene_id:26135|Hs108|chr1        ( 393)  919 132.7 5.8e-31
CCDS639.1 SERBP1 gene_id:26135|Hs108|chr1          ( 387)  763 112.2 8.6e-25
CCDS30746.1 SERBP1 gene_id:26135|Hs108|chr1        ( 408)  506 78.5 1.3e-14


>>CCDS6719.1 HABP4 gene_id:22927|Hs108|chr9               (413 aa)
 initn: 2857 init1: 2857 opt: 2857  Z-score: 2046.1  bits: 387.6 E(32554): 1.2e-107
Smith-Waterman score: 2857; 100.0% identity (100.0% similar) in 413 aa overlap (1-413:1-413)

               10        20        30        40        50        60
pF1KB8 MKGALGSPVAAAGAAMQESFGCVVANRFHQLLDDESDPFDILREAERRRQQQLQRKRRDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MKGALGSPVAAAGAAMQESFGCVVANRFHQLLDDESDPFDILREAERRRQQQLQRKRRDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AAAAAGAGPRGGRSPAGASGHRAGAGGRRESQKERKSLPAPVAQRPDSPGGGLQAPGQKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 AAAAAGAGPRGGRSPAGASGHRAGAGGRRESQKERKSLPAPVAQRPDSPGGGLQAPGQKR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 TPRRGEQQGWNDSRGPEGMLERAERRSYREYRPYETERQADFTAEKFPDEKPGDRFDRDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 TPRRGEQQGWNDSRGPEGMLERAERRSYREYRPYETERQADFTAEKFPDEKPGDRFDRDR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PLRGRGGPRGGMRGRGRGGPGNRVFDAFDQRGKREFERYGGNDKIAVRTEDNMGGCGVRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 PLRGRGGPRGGMRGRGRGGPGNRVFDAFDQRGKREFERYGGNDKIAVRTEDNMGGCGVRT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 WGSGKDTSDVEPTAPMEEPTVVEESQGTPEEESPAKVPELEVEEETQVQEMTLDEWKNLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 WGSGKDTSDVEPTAPMEEPTVVEESQGTPEEESPAKVPELEVEEETQVQEMTLDEWKNLQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 EQTRPKPEFNIRKPESTVPSKAVVIHKSKYRDDMVKDDYEDDSHVFRKPANDITSQLEIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 EQTRPKPEFNIRKPESTVPSKAVVIHKSKYRDDMVKDDYEDDSHVFRKPANDITSQLEIN
              310       320       330       340       350       360

              370       380       390       400       410   
pF1KB8 FGNLPRPGRGARGGTRGGRGRIRRAENYGPRAEVVMQDVAPNPDDPEDFPALS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 FGNLPRPGRGARGGTRGGRGRIRRAENYGPRAEVVMQDVAPNPDDPEDFPALS
              370       380       390       400       410   

>>CCDS30747.1 SERBP1 gene_id:26135|Hs108|chr1             (393 aa)
 initn: 593 init1: 190 opt: 919  Z-score: 669.3  bits: 132.7 E(32554): 5.8e-31
Smith-Waterman score: 919; 42.8% identity (64.1% similar) in 418 aa overlap (16-413:5-393)

               10        20        30        40        50        60
pF1KB8 MKGALGSPVAAAGAAMQESFGCVVANRFHQLLDDESDPFDILREAERRRQQQLQRKRRDE
                      .::.:::::.::: ::.:::::::..:. :: ....         
CCDS30            MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKE---------
                          10        20        30        40         

               70        80            90        100           110 
pF1KB8 AAAAAGAGPRGGRSPAGASGHR----AGAGGRRESQKERKS-LPAPVA----QRPDSPGG
        :...:.:  :..: : :...     ::   :.::::.::. ::  :.    ..  .:  
CCDS30 -AGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPV
                50        60        70        80        90         

             120       130       140       150       160       170 
pF1KB8 GLQAPGQKRTPRRGEQQGWNDSRGPEGMLERAERRSYREYRPYETERQADFTAEKFPDEK
       .:.  : .:. :: .::  ....  .   .: :::  :: : .:   .    . .:  ..
CCDS30 ALKKEGIRRVGRRPDQQLQGEGKIID---RRPERRPPRERR-FEKPLEEKGEGGEFSVDR
     100       110       120          130        140       150     

             180       190        200       210       220          
pF1KB8 PGDRFDRDRPLRGRGGPRGGMRGRGRG-GPGNRVFDAFDQRGKREFERYGGNDKIA----
       :      :::.:::::   :  ::::: : :    :.::.::::::.:..:.:. .    
CCDS30 P----IIDRPIRGRGGLGRGRGGRGRGMGRG----DGFDSRGKREFDRHSGSDRSSFSHY
             160       170       180           190       200       

          230       240        250       260       270       280   
pF1KB8 --VRTEDNMGGCGVRTWGSGKDT-SDVEPTAPMEEPTVVEESQGTPEEESPAKVPELEVE
         .. ::. :: : ..::. ::  .:.. .   ::    :: .  :  ..  :  :.:  
CCDS30 SGLKHEDKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEEHH--PVADTENKENEVEEV
       210       220       230       240       250         260     

           290       300       310       320          330       340
pF1KB8 EETQVQEMTLDEWKNLQEQTRPKPEFNIRKPESTVPS---KAVVIHKSKYRDDMVKDDYE
       .:   .:::::::: .:.. : : :::::::.  . .   :. :.:::: ..  ..:.  
CCDS30 KEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVM
         270       280       290       300       310       320     

              350       360       370       380       390       400
pF1KB8 DDSHVFRKPANDITSQLEINFGNLPRPGRGARGGTRGGRGRIRRAENYGPRAEVVMQDVA
       :  : :::::::::::::::::.: :::::.::: ::::::  :  : : :..    . :
CCDS30 D--HHFRKPANDITSQLEINFGDLGRPGRGGRGG-RGGRGRGGRP-NRGSRTDKSSAS-A
           330       340       350        360        370        380

              410   
pF1KB8 PNPDDPEDFPALS
       :. :::: ::::.
CCDS30 PDVDDPEAFPALA
              390   

>>CCDS639.1 SERBP1 gene_id:26135|Hs108|chr1               (387 aa)
 initn: 779 init1: 313 opt: 763  Z-score: 558.6  bits: 112.2 E(32554): 8.6e-25
Smith-Waterman score: 940; 43.4% identity (65.0% similar) in 412 aa overlap (16-413:5-387)

               10        20        30        40        50        60
pF1KB8 MKGALGSPVAAAGAAMQESFGCVVANRFHQLLDDESDPFDILREAERRRQQQLQRKRRDE
                      .::.:::::.::: ::.:::::::..:. :: ....         
CCDS63            MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKE---------
                          10        20        30        40         

               70        80            90        100           110 
pF1KB8 AAAAAGAGPRGGRSPAGASGHR----AGAGGRRESQKERKS-LPAPVA----QRPDSPGG
        :...:.:  :..: : :...     ::   :.::::.::. ::  :.    ..  .:  
CCDS63 -AGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPV
                50        60        70        80        90         

             120       130       140       150       160       170 
pF1KB8 GLQAPGQKRTPRRGEQQGWNDSRGPEGMLERAERRSYREYRPYETERQADFTAEKFPDEK
       .:.  : .:. :: .::  ....  .   .: :::  :: : .:   .    . .:  ..
CCDS63 ALKKEGIRRVGRRPDQQLQGEGKIID---RRPERRPPRERR-FEKPLEEKGEGGEFSVDR
     100       110       120          130        140       150     

             180       190        200       210       220       230
pF1KB8 PGDRFDRDRPLRGRGGPRGGMRGRGRG-GPGNRVFDAFDQRGKREFERYGGNDKIAVRTE
       :      :::.:::::   :  ::::: : :    :.::.::::::.:..:.:. ... :
CCDS63 P----IIDRPIRGRGGLGRGRGGRGRGMGRG----DGFDSRGKREFDRHSGSDRSGLKHE
             160       170       180           190       200       

              240        250       260       270       280         
pF1KB8 DNMGGCGVRTWGSGKDT-SDVEPTAPMEEPTVVEESQGTPEEESPAKVPELEVEEETQVQ
       :. :: : ..::. ::  .:.. .   ::    :: .  :  ..  :  :.:  .:   .
CCDS63 DKRGGSGSHNWGTVKDELTDLDQSNVTEETPEGEEHH--PVADTENKENEVEEVKEEGPK
       210       220       230       240         250       260     

     290       300       310       320          330       340      
pF1KB8 EMTLDEWKNLQEQTRPKPEFNIRKPESTVPS---KAVVIHKSKYRDDMVKDDYEDDSHVF
       :::::::: .:.. : : :::::::.  . .   :. :.:::: ..  ..:.  :  : :
CCDS63 EMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMD--HHF
         270       280       290       300       310       320     

        350       360       370       380       390       400      
pF1KB8 RKPANDITSQLEINFGNLPRPGRGARGGTRGGRGRIRRAENYGPRAEVVMQDVAPNPDDP
       ::::::::::::::::.: :::::.::: ::::::  :  : : :..    . ::. :::
CCDS63 RKPANDITSQLEINFGDLGRPGRGGRGG-RGGRGRGGRP-NRGSRTDKSSAS-APDVDDP
           330       340       350        360        370        380

        410   
pF1KB8 EDFPALS
       : ::::.
CCDS63 EAFPALA
              

>>CCDS30746.1 SERBP1 gene_id:26135|Hs108|chr1             (408 aa)
 initn: 801 init1: 184 opt: 506  Z-score: 375.7  bits: 78.5 E(32554): 1.3e-14
Smith-Waterman score: 898; 41.5% identity (62.9% similar) in 431 aa overlap (16-413:5-408)

               10        20        30        40        50        60
pF1KB8 MKGALGSPVAAAGAAMQESFGCVVANRFHQLLDDESDPFDILREAERRRQQQLQRKRRDE
                      .::.:::::.::: ::.:::::::..:. :: ....         
CCDS30            MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKE---------
                          10        20        30        40         

               70        80            90        100           110 
pF1KB8 AAAAAGAGPRGGRSPAGASGHR----AGAGGRRESQKERKS-LPAPVA----QRPDSPGG
        :...:.:  :..: : :...     ::   :.::::.::. ::  :.    ..  .:  
CCDS30 -AGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPV
                50        60        70        80        90         

             120       130       140       150       160       170 
pF1KB8 GLQAPGQKRTPRRGEQQGWNDSRGPEGMLERAERRSYREYRPYETERQADFTAEKFPDEK
       .:.  : .:. :: .::  ....  .   .: :::  :: : .:   .    . .:  ..
CCDS30 ALKKEGIRRVGRRPDQQLQGEGKIID---RRPERRPPRERR-FEKPLEEKGEGGEFSVDR
     100       110       120          130        140       150     

             180       190        200       210       220          
pF1KB8 PGDRFDRDRPLRGRGGPRGGMRGRGRG-GPGNRVFDAFDQRGKREFERYGGNDKIA----
       :      :::.:::::   :  ::::: : :    :.::.::::::.:..:.:. .    
CCDS30 P----IIDRPIRGRGGLGRGRGGRGRGMGRG----DGFDSRGKREFDRHSGSDRSSFSHY
             160       170       180           190       200       

          230       240       250                 260           270
pF1KB8 --VRTEDNMGGCGVRTWGSGKDTSDVEPT----------APMEEPTVVEES-QGT---PE
         .. ::. :: : ..::. ::     :           . ... .:.::. .:    : 
CCDS30 SGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNYSDLDQSNVTEETPEGEEHHPV
       210       220       230       240       250       260       

              280       290       300       310       320          
pF1KB8 EESPAKVPELEVEEETQVQEMTLDEWKNLQEQTRPKPEFNIRKPESTVPS---KAVVIHK
        ..  :  :.:  .:   .:::::::: .:.. : : :::::::.  . .   :. :.::
CCDS30 ADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHK
       270       280       290       300       310       320       

       330       340       350       360       370       380       
pF1KB8 SKYRDDMVKDDYEDDSHVFRKPANDITSQLEINFGNLPRPGRGARGGTRGGRGRIRRAEN
       :: ..  ..:.  :  : :::::::::::::::::.: :::::.::: ::::::  :  :
CCDS30 SKSEEAHAEDSVMD--HHFRKPANDITSQLEINFGDLGRPGRGGRGG-RGGRGRGGRP-N
       330       340         350       360       370        380    

       390       400       410   
pF1KB8 YGPRAEVVMQDVAPNPDDPEDFPALS
        : :..    . ::. :::: ::::.
CCDS30 RGSRTDKSSAS-APDVDDPEAFPALA
           390        400        




413 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:02:20 2016 done: Fri Nov  4 10:02:21 2016
 Total Scan time:  2.330 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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