Result of FASTA (ccds) for pF1KB8147
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8147, 268 aa
  1>>>pF1KB8147 268 - 268 aa - 268 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8572+/-0.000826; mu= 8.9904+/- 0.050
 mean_var=107.9156+/-21.545, 0's: 0 Z-trim(109.8): 8  B-trim: 0 in 0/51
 Lambda= 0.123462
 statistics sampled from 11167 (11174) to 11167 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.343), width:  16
 Scan time:  1.670

The best scores are:                                      opt bits E(32554)
CCDS13208.1 MAPRE1 gene_id:22919|Hs108|chr20       ( 268) 1777 326.6 1.1e-89
CCDS45851.1 MAPRE2 gene_id:10982|Hs108|chr18       ( 284) 1018 191.4 5.9e-49
CCDS45850.1 MAPRE2 gene_id:10982|Hs108|chr18       ( 315) 1018 191.4 6.5e-49
CCDS11910.1 MAPRE2 gene_id:10982|Hs108|chr18       ( 327) 1018 191.4 6.7e-49
CCDS1731.1 MAPRE3 gene_id:22924|Hs108|chr2         ( 281)  885 167.7 7.9e-42
CCDS58619.1 MAPRE2 gene_id:10982|Hs108|chr18       ( 274)  827 157.4   1e-38


>>CCDS13208.1 MAPRE1 gene_id:22919|Hs108|chr20            (268 aa)
 initn: 1777 init1: 1777 opt: 1777  Z-score: 1723.4  bits: 326.6 E(32554): 1.1e-89
Smith-Waterman score: 1777; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)

               10        20        30        40        50        60
pF1KB8 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKAGPGVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKAGPGVV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQ
              190       200       210       220       230       240

              250       260        
pF1KB8 RIVDILYATDEGFVIPDEGGPQEEQEEY
       ::::::::::::::::::::::::::::
CCDS13 RIVDILYATDEGFVIPDEGGPQEEQEEY
              250       260        

>>CCDS45851.1 MAPRE2 gene_id:10982|Hs108|chr18            (284 aa)
 initn: 1007 init1: 784 opt: 1018  Z-score: 992.3  bits: 191.4 E(32554): 5.9e-49
Smith-Waterman score: 1018; 56.3% identity (78.3% similar) in 277 aa overlap (1-267:1-270)

               10        20        30        40        50        60
pF1KB8 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK
       :::::::::.:....::::..::.:. ..:: ::.::::::::::::::::::: :.:::
CCDS45 MAVNVYSTSITQETMSRHDIIAWVNDIVSLNYTKVEQLCSGAAYCQFMDMLFPGCISLKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD
       ::::::::::::.:::.:::.::::.:::.:::.:::::.::::..:.::::::.:::::
CCDS45 VKFQAKLEHEYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYD
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KB8 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKAGPG--
       ::.:::: :::::..   :.     .: :::   ..:  :    . .  :: : . :.  
CCDS45 GKEYDPVEARQGQDAIPPPDPGEQIFNLPKKSHHANS--PTAGAAKSSPAAKPGSTPSRP
              130       140       150         160       170        

       180              190       200       210       220       230
pF1KB8 -VVRKNPGVGNG-------DDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQE
         ...  . :..       . .. .: .::. :::..: .::::::::::::.:::.:::
CCDS45 SSAKRASSSGSASKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQE
      180       190       200       210       220       230        

              240       250       260                     
pF1KB8 NEGENDPVLQRIVDILYATDEGFVIPDEGGPQEEQEEY             
       .  ::: ..::..:::::..:      ::  .: . :              
CCDS45 HGQENDDLVQRLMDILYASEE-----HEGHTEEPEAEEQAHEQQPPQQEEY
      240       250            260       270       280    

>>CCDS45850.1 MAPRE2 gene_id:10982|Hs108|chr18            (315 aa)
 initn: 1007 init1: 784 opt: 1018  Z-score: 991.7  bits: 191.4 E(32554): 6.5e-49
Smith-Waterman score: 1018; 56.3% identity (78.3% similar) in 277 aa overlap (1-267:32-301)

                                             10        20        30
pF1KB8                               MAVNVYSTSVTSDNLSRHDMLAWINESLQL
                                     :::::::::.:....::::..::.:. ..:
CCDS45 KQNRDQKCPVSQRNSSFQQPGRKPGCSSWGMAVNVYSTSITQETMSRHDIIAWVNDIVSL
              10        20        30        40        50        60 

               40        50        60        70        80        90
pF1KB8 NLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKI
       : ::.::::::::::::::::::: :.:::::::::::::::.:::.:::.::::.:::.
CCDS45 NYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKV
              70        80        90       100       110       120 

              100       110       120       130       140       150
pF1KB8 IPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAVAPSLVAPALNKPK
       :::.:::::.::::..:.::::::.:::::::.:::: :::::..   :.     .: ::
CCDS45 IPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPK
             130       140       150       160       170       180 

              160       170          180              190       200
pF1KB8 KPLTSSSAAPQRPISTQRTAAAPKAGPG---VVRKNPGVGNG-------DDEAAELMQQV
       :   ..:  :    . .  :: : . :.    ...  . :..       . .. .: .::
CCDS45 KSHHANS--PTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASKSDKDLETQVIQLNEQV
               190       200       210       220       230         

              210       220       230       240       250       260
pF1KB8 NVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPDEGG
       . :::..: .::::::::::::.:::.:::.  ::: ..::..:::::..:      :: 
CCDS45 HSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYASEE-----HEGH
     240       250       260       270       280       290         

                            
pF1KB8 PQEEQEEY             
        .: . :              
CCDS45 TEEPEAEEQAHEQQPPQQEEY
          300       310     

>>CCDS11910.1 MAPRE2 gene_id:10982|Hs108|chr18            (327 aa)
 initn: 1007 init1: 784 opt: 1018  Z-score: 991.4  bits: 191.4 E(32554): 6.7e-49
Smith-Waterman score: 1018; 56.3% identity (78.3% similar) in 277 aa overlap (1-267:44-313)

                                             10        20        30
pF1KB8                               MAVNVYSTSVTSDNLSRHDMLAWINESLQL
                                     :::::::::.:....::::..::.:. ..:
CCDS11 NNNDIIQDNNGTIIPFRKHTVRGERSYSWGMAVNVYSTSITQETMSRHDIIAWVNDIVSL
            20        30        40        50        60        70   

               40        50        60        70        80        90
pF1KB8 NLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKI
       : ::.::::::::::::::::::: :.:::::::::::::::.:::.:::.::::.:::.
CCDS11 NYTKVEQLCSGAAYCQFMDMLFPGCISLKKVKFQAKLEHEYIHNFKLLQASFKRMNVDKV
            80        90       100       110       120       130   

              100       110       120       130       140       150
pF1KB8 IPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQGQETAVAPSLVAPALNKPK
       :::.:::::.::::..:.::::::.:::::::.:::: :::::..   :.     .: ::
CCDS11 IPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEARQGQDAIPPPDPGEQIFNLPK
           140       150       160       170       180       190   

              160       170          180              190       200
pF1KB8 KPLTSSSAAPQRPISTQRTAAAPKAGPG---VVRKNPGVGNG-------DDEAAELMQQV
       :   ..:  :    . .  :: : . :.    ...  . :..       . .. .: .::
CCDS11 KSHHANS--PTAGAAKSSPAAKPGSTPSRPSSAKRASSSGSASKSDKDLETQVIQLNEQV
           200         210       220       230       240       250 

              210       220       230       240       250       260
pF1KB8 NVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPDEGG
       . :::..: .::::::::::::.:::.:::.  ::: ..::..:::::..:      :: 
CCDS11 HSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLVQRLMDILYASEE-----HEGH
             260       270       280       290       300           

                            
pF1KB8 PQEEQEEY             
        .: . :              
CCDS11 TEEPEAEEQAHEQQPPQQEEY
        310       320       

>>CCDS1731.1 MAPRE3 gene_id:22924|Hs108|chr2              (281 aa)
 initn: 1157 init1: 838 opt: 885  Z-score: 864.4  bits: 167.7 E(32554): 7.9e-42
Smith-Waterman score: 1159; 65.4% identity (81.6% similar) in 283 aa overlap (1-268:1-281)

               10        20        30        40        50        60
pF1KB8 MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKK
       ::::::::::::.::::::::::.:.::.:: :::::::::::::::::::::: . :.:
CCDS17 MAVNVYSTSVTSENLSRHDMLAWVNDSLHLNYTKIEQLCSGAAYCQFMDMLFPGCVHLRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYD
       ::::::::::::.:::.:::.::.:::::::::.:::::::::::::.::::::::::::
CCDS17 VKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYD
               70        80        90       100       110       120

              130       140       150       160            170     
pF1KB8 GKDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQR-----PISTQRTAAAPK-
       ::::.:. :::::..:  :.     .:: :: .  ..:.:::     : . : ..   . 
CCDS17 GKDYNPLLARQGQDVAPPPNPGDQIFNKSKKLI--GTAVPQRTSPTGPKNMQTSGRLSNV
              130       140       150         160       170        

          180            190       200       210       220         
pF1KB8 AGPGVVRKNP-GVGNG----DDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQ
       : : ..:::: .. ::    : .  :: ::.  :::::. :::::::::.:::.::::::
CCDS17 APPCILRKNPPSARNGGHETDAQILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQ
      180       190       200       210       220       230        

     230       240       250           260        
pF1KB8 ENEGENDPVLQRIVDILYATDEGFVIPD----EGGPQEEQEEY
       :.:.::.::.. :. :::::.:::. :.    :   ::.:.::
CCDS17 EHESENSPVISGIIGILYATEEGFAPPEDDEIEEHQQEDQDEY
      240       250       260       270       280 

>>CCDS58619.1 MAPRE2 gene_id:10982|Hs108|chr18            (274 aa)
 initn: 816 init1: 593 opt: 827  Z-score: 808.7  bits: 157.4 E(32554): 1e-38
Smith-Waterman score: 827; 54.2% identity (75.6% similar) in 238 aa overlap (40-267:30-260)

      10        20        30        40        50        60         
pF1KB8 VTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEH
                                     .:::::::::::::: :.::::::::::::
CCDS58  MARTTTTSSRIITGPSFLSGSTQCAGSVPTGAAYCQFMDMLFPGCISLKKVKFQAKLEH
                10        20        30        40        50         

      70        80        90       100       110       120         
pF1KB8 EYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAA
       :::.:::.:::.::::.:::.:::.:::::.::::..:.::::::.:::::::.:::: :
CCDS58 EYIHNFKLLQASFKRMNVDKVIPVEKLVKGRFQDNLDFIQWFKKFYDANYDGKEYDPVEA
      60        70        80        90       100       110         

     130       140       150       160       170          180      
pF1KB8 RQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRTAAAPKAGPG---VVRKNPGV
       ::::..   :.     .: :::  .  . .:    . .  :: : . :.    ...  . 
CCDS58 RQGQDAIPPPDPGEQIFNLPKK--SHHANSPTAGAAKSSPAAKPGSTPSRPSSAKRASSS
     120       130       140         150       160       170       

               190       200       210       220       230         
pF1KB8 GNG-------DDEAAELMQQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVL
       :..       . .. .: .::. :::..: .::::::::::::.:::.:::.  ::: ..
CCDS58 GSASKSDKDLETQVIQLNEQVHSLKLALEGVEKERDFYFGKLREIELLCQEHGQENDDLV
       180       190       200       210       220       230       

     240       250       260                     
pF1KB8 QRIVDILYATDEGFVIPDEGGPQEEQEEY             
       ::..:::::..:      ::  .: . :              
CCDS58 QRLMDILYASEE-----HEGHTEEPEAEEQAHEQQPPQQEEY
       240            250       260       270    




268 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:00:12 2016 done: Fri Nov  4 10:00:12 2016
 Total Scan time:  1.670 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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