GENSCAN 1.0	Date run:  4-Nov-116	Time: 09:50:14

Sequence gi568815585f:97334471_97564439 : 229969 bp : 39.21% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1980   2156  177  2  0   63  -46   195 0.334   2.91
 1.02 Intr +   2726   2842  117  1  0   56   52   102 0.351   3.14
 1.03 Intr +   8546   8746  201  1  0  109   65    91 0.976   7.46
 1.04 Intr +  12334  12597  264  0  0   81  115   235 0.979  22.29
 1.05 Intr +  23012  23165  154  1  1   84   91   182 0.979  16.82
 1.06 Term +  32575  32723  149  2  2   45   38   108 0.185  -1.42
 1.07 PlyA +  32982  32987    6                               1.05

 2.08 PlyA -  33627  33622    6                               1.05
 2.07 Term -  37160  36780  381  2  0   77   32   156 0.682   2.75
 2.06 Intr -  37614  37525   90  0  0   47   84    67 0.686   1.47
 2.05 Intr -  40803  40663  141  0  0   38  111    86 0.861   5.53
 2.04 Intr -  41159  41098   62  0  2   48   94    28 0.262  -3.07
 2.03 Intr -  46556  46424  133  2  1   38  115    65 0.277   3.50
 2.02 Intr -  51807  51720   88  2  1   43   83    58 0.308  -0.15
 2.01 Init -  53287  53070  218  1  2   93   50   155 0.397  10.42
 2.00 Prom -  64939  64900   40                              -1.95

 3.00 Prom +  67457  67496   40                              -6.15
 3.01 Init +  71229  71310   82  2  1   75   42    64 0.953   1.68
 3.02 Term +  72789  72937  149  1  2   78   33   178 0.990   8.38
 3.03 PlyA +  73200  73205    6                               1.05

 4.00 Prom +  77098  77137   40                              -7.65
 4.01 Init +  77940  77993   54  2  0   67   64    69 0.300   3.73
 4.02 Intr +  78270  78332   63  2  0   88   94    38 0.297   2.40
 4.03 Intr +  84565  84735  171  0  0   77   75   167 0.201  13.52
 4.04 Intr +  95911  95989   79  0  1   60   48    80 0.008  -0.59
 4.05 Intr +  98350  98625  276  2  0   55   64   225 0.619  13.37
 4.06 Intr +  98790  98920  131  1  2   18   -3   166 0.414  -0.01
 4.07 Intr +  99956 100314  359  1  2  -14   89   716 0.281  54.63
 4.08 Term + 129735 129972  238  0  1   97   39   297 0.908  20.36
 4.09 PlyA + 131203 131208    6                               1.05

 5.00 Prom + 133650 133689   40                              -6.35
 5.01 Init + 140400 140668  269  2  2   59   80   246 0.709  17.40
 5.02 Intr + 141285 141572  288  0  0    9   27   189 0.388   0.34
 5.03 Term + 141688 141949  262  1  1   -4   53   277 0.763   9.01
 5.04 PlyA + 142327 142332    6                               1.05

 6.00 Prom + 147791 147830   40                              -6.55
 6.01 Init + 161082 161301  220  2  1   59   49   133 0.666   5.34
 6.02 Intr + 163822 163945  124  2  1   82   83   109 0.923   8.52
 6.03 Term + 167240 167495  256  2  1   52   48   145 0.527   0.97
 6.04 PlyA + 168862 168867    6                               1.05

 7.00 Prom + 173897 173936   40                              -3.45
 7.01 Init + 179192 179260   69  1  0   47  115    24 0.395   2.12
 7.02 Intr + 180470 180562   93  1  0   87  105    56 0.461   6.44
 7.03 Intr + 181430 181632  203  1  2   43   91    82 0.057   1.16
 7.04 Intr + 190700 190783   84  2  0   93   80    53 0.060   3.02
 7.05 Intr + 197079 197158   80  0  2  134   52    42 0.022   3.48
 7.06 Intr + 199009 199202  194  2  2   65  -40   150 0.274  -1.81
 7.07 Term + 202077 202193  117  2  0  121   41   109 0.481   7.06
 7.08 PlyA + 203284 203289    6                               1.05

 8.05 PlyA - 204455 204450    6                               1.05
 8.04 Term - 205667 205588   80  0  2   14   47   184 0.052   3.85
 8.03 Intr - 212881 212720  162  2  0   89   72    77 0.015   5.23
 8.02 Intr - 223670 223571  100  2  1  103   48    76 0.014   3.86
 8.01 Init - 224394 224332   63  0  0   43   77    69 0.509   2.50

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 174302 174227   76  2  1   85   89    71 0.886   8.20
S.002 Term - 223670 223524  147  2  0  103   38   131 0.973   6.52


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815585f:97334471_97564439|GENSCAN_predicted_peptide_1|353_aa
MGRPSWIECSCKRPYKRRSYKREGELALTEEEQGSVTTEADWIDVATAEECQQPPEDGRQ
EGTVYEPGSWSSSDIKSAGTLIWGVPASKTVRNSIQLFPTFPVGPAIGTNTAISFAPYLA
PVTPGVGLVPTEILPTTPVIVPGSPPVTVPGSTATQKLLRTDKLEVCREFQRGNCARGET
DCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQAKIKAAQHQANQAA
VAAQAAAAAATVMAFPPGALHPLPKRQALEKSNGTSAVFNPSVLHYQQALTSAQLQQHAA
FIPTGSAKLTWFPPYNLLQYWPKSQTIRNEESWVPLNSQRLDITDEEHLTLLV

>gi568815585f:97334471_97564439|GENSCAN_predicted_CDS_1|1062_bp
atggggagaccctcctggattgaatgcagttgcaagcgtccttataagagacgctcatat
aagagagagggagagttagcactgacagaagaggagcaaggcagtgtgaccacagaggca
gattggattgatgtggccacagcagaggaatgccagcaaccaccagaagatggaagacaa
gaaggcactgtctatgaaccagggagctggtcctcatcagacatcaaatctgcgggcacc
ttgatttggggggttccagcttccaaaactgtgagaaattcaattcagttgtttcccact
ttccctgtaggtcccgcgatagggacaaatacggctattagctttgctccttacctagca
cctgtaacccctggagttgggttggtcccaacggaaattctgcccaccacgcctgttatt
gttcccggaagtccaccggtcactgtcccgggctcaactgcaactcagaaacttctcagg
actgacaaactggaggtatgcagggagttccagcgaggaaactgtgcccggggagagacc
gactgccgctttgcacaccccgcagacagcaccatgatcgacacaagtgacaacaccgta
accgtttgtatggattacataaaggggcgttgcatgagggagaaatgcaaatattttcac
cctcctgcacacttgcaggccaaaatcaaagctgcgcagcaccaagccaaccaagctgcg
gtggccgcccaggcagccgcggccgcggccacagtcatggcctttccccctggtgctctt
catcctttaccaaagagacaagcacttgaaaaaagcaatggtaccagcgcggtctttaac
cccagcgtcttgcactaccagcaggctctcaccagcgcacagttgcagcaacacgccgcg
ttcattccaacaggttctgccaaactcacttggttcccaccttacaatctgctccaatac
tggcctaagagccaaaccatccggaatgaagagtcatgggtgccgctgaactcacaaagg
ctggatataactgatgaggagcatttaactctgttggtttaa

>gi568815585f:97334471_97564439|GENSCAN_predicted_peptide_2|370_aa
MEKMTCIILTGLHNVQSACTNQHEFGDVTLLIGEGIPSRAWGRSEIGRRDTEVPKSMAVP
HGACFRGCLEEPLQYPLYSLSLDGFLSWHQPTLQATSWQAAVVQRKNQKEYWRGISGGLS
VPPVRFVPFRALVPHLACITLAPLQCGKQSPGGFNIMACGKQMAGAWSGQQTQSSLTLGV
TASSNVTPEECQKGLRDQSKCQCVFDVWQHLMCLSSDLETWTICIDSTPEGTLSFKQKPV
VGGRSTVSITILLENPSVAKSGPNPLTWHQGTTQSIRIKPTLQPLPQTDALINLNGSYSP
AELDTSPAFFVDLHLSFFLFNDGALRNVQSPCRIQRTGKVLLAGGGGERCSGKDSEYKLY
FNCAFKNVIK

>gi568815585f:97334471_97564439|GENSCAN_predicted_CDS_2|1113_bp
atggaaaagatgacgtgcataattttaactggcttgcacaatgtacaaagtgcttgcaca
aaccagcatgagtttggagatgtcactctgctcattggtgaaggcatcccctccagggca
tggggacggtctgagatagggcgacgggacacagaggttccaaagagcatggctgtgcct
catggagcctgcttcagagggtgcttagaagaacccctgcaatatccactatattcacta
agtctggatggcttcctgagctggcatcagccaacgctacaggcaacatcatggcaggca
gcagtggtgcaaaggaaaaatcaaaaagagtactggaggggaatttcaggaggcttgtct
gtgccaccagtcagatttgtgccctttcgagccttagttcctcacttggcttgtatcacg
ctggcacctctgcagtgcgggaaacagagtcccggtgggtttaacataatggcgtgtgga
aagcagatggctggtgcatggagtggtcagcagacccagtccagtctgaccttgggagtc
actgcctccagcaatgtcaccccagaggaatgccagaaggggctgagagaccagagcaaa
tgccagtgtgtctttgacgtgtggcagcatcttatgtgtttgagctctgatttggagaca
tggacaatatgcattgactctacacctgaggggactctttcctttaagcagaagcctgtg
gttggaggtaggagtactgtttccatcactattctgcttgaaaatccttcagtggccaag
tcagggccgaaccctttaacttggcatcaaggtaccacacaatcaatcagaatcaaacct
acgctgcagccgctcccacaaacggatgctctgatcaatctgaatgggagttattctcca
gctgaacttgatacttccccagctttctttgtagacttgcatttgtctttctttctattt
aatgatggtgccttaaggaatgtgcaaagtccttgtagaattcagaggacagggaaagta
cttcttgctgggggaggaggagagagatgttcagggaaagattcggagtataaattgtat
tttaattgtgcctttaagaatgtgattaagtaa

>gi568815585f:97334471_97564439|GENSCAN_predicted_peptide_3|76_aa
MGLYSTKSLVGPLMEMPSCSTCDFQSYFLPSTNEDKKIEHLASAVMMMNPVRISLEMRMK
VQGAGVPARTSPTQDT

>gi568815585f:97334471_97564439|GENSCAN_predicted_CDS_3|231_bp
atggggctctactccaccaagtcacttgtgggcccactgatggagatgccatcctgttca
acttgtgacttccaaagttattttttaccatctacaaatgaggacaagaagattgaacac
ttagcgagtgctgtcatgatgatgaatcctgtgagaatttcactggagatgaggatgaaa
gtacaaggagctggggtccccgctagaacatcaccaactcaggacacttag

>gi568815585f:97334471_97564439|GENSCAN_predicted_peptide_4|456_aa
MTLSHTLSPEEEHMQDCKSRIPAVLLNHTKQKLTKTQIKASSVPARAQPYSDCLVSSLIP
REPAIQNCKGKQIQENPTQVSECLYTNHILTEATVKILNCIRSLTGQETIVCSPYTCQQR
FTGRMPRRRREKWNSSFWLATHLVLLPEQGTATGSSISAPPKPQQPVPVSIPPASVARGS
RALVGLAEASVTRQLTYDWLAERARRAPPGKALGAGCCYEESRAFRLPFGIPLSRFSTHP
WLTGRGKSSTSVRHRKGRVYVAGGGGGGGRGGTMREYKVVVLGSGGVGKSALTVQFVTGT
FIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQ
QSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSA
KSKTMVDELFAEIVRQMNYAAQPDKDDPCCSACNIQ

>gi568815585f:97334471_97564439|GENSCAN_predicted_CDS_4|1371_bp
atgacactgagtcacactttgagtcctgaagaagagcacatgcaggactgcaagagtaga
attccagctgtcttactaaaccacactaaacaaaaacttactaaaactcagatcaaggcc
tcatcagtccctgccagagcacagccttactctgactgcctggtgtcatcactgatccca
agagaaccagccatccaaaactgcaaaggaaaacaaatccaggaaaaccctacacaggtc
agtgaatgcctctacaccaatcacatcttgactgaagctaccgtgaagattctcaactgt
attaggagcctcacaggtcaagaaaccatcgtctgctctccttatacttgccagcagcgt
ttcacaggcagaatgccacggaggcgacgtgaaaagtggaattcatcattctggcttgca
acgcatcttgttcttttgccagaacagggcacagcaactggctcctcaatctctgcccct
cccaaaccccagcagccggtccctgtctccatcccgccggcctcggtggcaaggggctcg
cgagctctggttggcttggccgaagcttccgtcactcgccagctcacctacgattggttg
gcagagcgtgcgcgaagagccccgcctggcaaggcactgggagctggctgttgctatgag
gagtccagggccttccggctgccgttcgggattccgctctccaggttttcaactcacccg
tggctgacagggcgtgggaagagctcgacttcagttcggcaccgaaaggggcgggtctat
gtcgcgggcggcggcggcggcggcggccgcggagggacgatgcgcgagtacaaagtggtg
gtgctgggctcgggcggggtaggcaaatccgccctgaccgtgcagttcgtgaccggcacc
ttcatcgagaaatacgaccccaccatcgaggacttctaccgcaaggagatcgaggtggat
tcgtcgccgtcggtgctggagatcctggacacggcgggcaccgagcagttcgcgtccatg
cgggacctgtacatcaagaacggccagggcttcatcctcgtctacagcctcgtcaaccag
cagagcttccaggacatcaagcccatgcgggaccagatcatccgcgtgaagcggtatgag
aaagtgccagtcatcttggttgggaacaaagtggacctggaaagtgagagagaagtatcg
tccagcgaaggcagagcccttgctgaagagtggggctgcccctttatggaaacttccgct
aagagtaaaacaatggtggacgaactctttgcagaaattgtgaggcagatgaactatgct
gctcagcctgacaaagatgacccatgctgttctgcatgtaacatacaatag

>gi568815585f:97334471_97564439|GENSCAN_predicted_peptide_5|272_aa
MHKLFSFTHTNSIRCVIFSNDRLLSKYTQQNWSALKLRGQWLSLFAIRSVNSFVEPLKAA
HGHSLGPGVGVEKSWQKWLRTGTRLENQGSTGFDRHLIIFSPKVQLYQVQYAFKAINQGG
LTSVAVRKKDCAVIVTHKIVPDKLLDSRTHLFKMTKNTGRVITGVTADSRSREQRAQYKA
ANCKYNIFEELGPRVYKCDAAGYYCGFKATAAGVKQAESTSFLEVKKKFAWTFEHSGNRN
YMPFYCAINDLKSSETEIRVVTVEIPEFRILT

>gi568815585f:97334471_97564439|GENSCAN_predicted_CDS_5|819_bp
atgcacaaactcttctcattcactcataccaatagtattcgctgtgtaattttttcaaat
gaccgacttctttccaaatatacacaacaaaactggtcagcattaaaactgcgaggacag
tggttgtcactgtttgccattagatctgtcaactcctttgtggagcctctcaaagctgcc
catggccatagccttgggcctggggttggagtggagaagagctggcagaaatggctgcgg
actggaacccggctggagaaccagggcagcactggttttgaccgccaccttataattttt
tcacccaaggtccagctctaccaagtacaatatgcttttaaggctattaaccagggtggc
cttacatcagtagctgtcagaaagaaagattgtgcagtaattgtcacacacaagatagta
cctgacaaattattggattccaggactcacttattcaagatgaccaaaaacactggccgt
gtgatcacaggagtgacagctgacagcagatcccgggaacagagggcgcaatataaggca
gctaattgcaaatacaatatatttgaagaactaggccctcgggtgtacaagtgtgatgct
gcaggttactactgtgggtttaaagccactgcagcaggagttaaacaagccgagtcaacc
agcttccttgaagtgaagaagaaatttgcctggacatttgaacacagtggcaaccgcaat
tacatgcctttctactgtgctatcaatgatctaaaatcttcagagacagaaattcgagta
gttacagttgaaattcctgaattcaggattcttacatga

>gi568815585f:97334471_97564439|GENSCAN_predicted_peptide_6|199_aa
MVLFSSSLSSSSLTLSALFRLLSSDVPRHSCVASSPFRVSSLILSLPEHKPVSGSPRPSI
CKTDSFDFLSFSEQLREQREQVAVASRRQLRPVGCFERSTGLQSGMQPAPGKSGEHFPNR
RKDPCFRNSDRNIWVATYESIPSCLPMPTQQCQTLQESRGLGRGREFETYCECIENHEKN
LLNLIGLANEIESFAKPLL

>gi568815585f:97334471_97564439|GENSCAN_predicted_CDS_6|600_bp
atggttttattcagcagctctcttagcagcagctctcttacactgtctgcgctgttccgg
ctgctttcttcagacgttcccaggcacagctgcgtggccagctctccctttagggtcagc
agcttaattctttctctccctgagcacaagccagtttctggctccccccgaccatccatc
tgcaagacagacagctttgattttctctctttctctgagcagctgagggaacaaagagaa
caagtggccgtggcatctagaaggcagctcaggcctgttggttgctttgagaggagcact
ggccttcaatcagggatgcagccagccccaggaaaatcaggggagcattttccaaacaga
aggaaggacccatgtttcagaaattctgatcggaatatttgggtggccacatatgaaagt
attccttcgtgcctgccaatgcccactcagcagtgccaaaccttgcaagaaagcaggggc
ttggggagagggcgtgagtttgaaacatactgcgaatgcattgaaaaccatgaaaaaaat
cttctcaacttaattggcttggccaatgagattgaatcatttgcaaaaccacttttatga

>gi568815585f:97334471_97564439|GENSCAN_predicted_peptide_7|279_aa
MEKALVHHNLYAGRVEQLRLSIQHLQATFQVSFRASEKESAPPSPWVTHIPSGELRAALT
LTPDFTQDLGEEKQGARCRWMTCCASYRNSQFKVFNKWTTESGLLQAHDRNHLNLTPRRV
LRDMVEAGNHRYQQTIAKTKNQTLQVLTHRSAGNARSSPKQADAGLLWKDTLWPAPGHTF
IEFHGFVPIHAPTAYGYGCALGQCFSAAPRAHVSNTWMSPLDRAQEAMWYTGKEQGFWTQ
ATCRIPLKPFTLHNIPHSVSILSVGKRYTQAAIATLPMR

>gi568815585f:97334471_97564439|GENSCAN_predicted_CDS_7|840_bp
atggaaaaggccttggtgcaccacaatctatatgcaggaagggtggagcagctcaggctg
tcaatccagcatctccaagccactttccaagttagcttcagggcttcagagaaagaaagt
gctcctccctcgccctgggtcactcacatccccagtggagagctgagagctgccttgaca
cttacaccagattttactcaggacttgggagaagagaaacagggagcaagatgcaggtgg
atgacatgctgtgcaagttacaggaactcacagtttaaagtcttcaataaatggactaca
gagtcaggtctcctgcaggcccacgacagaaatcatcttaacctgacacccaggagggtc
ctcagggacatggttgaagctggaaaccatcgttatcagcaaaccatcgcaaagacaaaa
aaccaaacactgcaggttctcactcacaggtctgctggaaatgctagatcatcccctaag
caggcagatgcaggactcctttggaaagatacactctggccagcccctggccataccttc
atcgagttccatggttttgttccaatccatgcgccaacggcatatggatatggctgtgca
ctggggcaatgcttttctgctgcaccccgggcccatgtatccaacacctggatgtctcct
ctggatcgtgcacaggaggccatgtggtatacagggaaagagcagggattctggacgcag
gctacttgcaggattccgctcaagcccttcacactccacaatattccccactcagtcagc
attctcagtgtaggtaaacgatacactcaggcagctattgcaactcttccaatgagatga

>gi568815585f:97334471_97564439|GENSCAN_predicted_peptide_8|134_aa
MQRRKNDTVDFGDSGAKDGMANLPPHLLLDVGPIIKVQHNPAVDVLGLRDCTGEEGKQKD
ALVPWKAALRDILLSGIQTEHGEAPRLRLSPALLFPAALDTPLFGLLQVIMGNDDDDVDN
CNDNNGNNDKNCGR

>gi568815585f:97334471_97564439|GENSCAN_predicted_CDS_8|405_bp
atgcaaaggcgtaagaatgacacagtggactttggggactcaggggcaaaagatgggatg
gcgaatctgcctccacatctccttttggatgtggggccaataattaaggtgcagcacaat
ccagctgttgatgtgctgggcctaagggactgtactggagaagaaggaaaacaaaaagat
gccttagttccatggaaggctgctctgagggatattctgctaagtggcatccagacagaa
cacggagaagctcctcgattgcgtctctcccctgccttattgtttcctgctgcccttgac
actccactgtttgggctattgcaagtaatcatgggaaatgatgatgatgatgttgataac
tgcaatgacaacaacggcaataatgacaaaaactgtggaagataa