Result of FASTA (omim) for pF1KB8122
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8122, 214 aa
  1>>>pF1KB8122 214 - 214 aa - 214 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0466+/-0.000351; mu= -2.1529+/- 0.022
 mean_var=236.6351+/-46.782, 0's: 0 Z-trim(121.9): 20  B-trim: 320 in 1/55
 Lambda= 0.083375
 statistics sampled from 39073 (39093) to 39073 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.458), width:  16
 Scan time:  5.830

The best scores are:                                      opt bits E(85289)
NP_877724 (OMIM: 608073) nucleoplasmin-2 isoform 1 ( 214) 1380 177.9 1.1e-44
XP_016868438 (OMIM: 608073) PREDICTED: nucleoplasm ( 214) 1380 177.9 1.1e-44
XP_011542664 (OMIM: 608073) PREDICTED: nucleoplasm ( 214) 1380 177.9 1.1e-44
XP_016868437 (OMIM: 608073) PREDICTED: nucleoplasm ( 214) 1380 177.9 1.1e-44
NP_001273609 (OMIM: 608073) nucleoplasmin-2 isofor ( 214) 1380 177.9 1.1e-44
XP_011542665 (OMIM: 608073) PREDICTED: nucleoplasm ( 214) 1380 177.9 1.1e-44
XP_011542662 (OMIM: 608073) PREDICTED: nucleoplasm ( 289) 1268 164.5 1.6e-40
XP_011542666 (OMIM: 608073) PREDICTED: nucleoplasm ( 156)  994 131.3 8.4e-31
NP_001273610 (OMIM: 608073) nucleoplasmin-2 isofor ( 136)  804 108.4 5.8e-24
XP_016868439 (OMIM: 608073) PREDICTED: nucleoplasm ( 172)  789 106.7 2.4e-23
XP_016868436 (OMIM: 608073) PREDICTED: nucleoplasm ( 247)  789 106.8 3.2e-23
NP_008924 (OMIM: 606456) nucleoplasmin-3 [Homo sap ( 178)  304 48.4   9e-06
XP_005265977 (OMIM: 164040) PREDICTED: nucleophosm ( 230)  257 42.8 0.00055
NP_954654 (OMIM: 164040) nucleophosmin isoform 2 [ ( 265)  257 42.8 0.00061
NP_001032827 (OMIM: 164040) nucleophosmin isoform  ( 259)  255 42.6 0.00071
NP_002511 (OMIM: 164040) nucleophosmin isoform 1 [ ( 294)  255 42.6 0.00078


>>NP_877724 (OMIM: 608073) nucleoplasmin-2 isoform 1 [Ho  (214 aa)
 initn: 1380 init1: 1380 opt: 1380  Z-score: 923.0  bits: 177.9 E(85289): 1.1e-44
Smith-Waterman score: 1380; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KB8 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_877 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_877 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_877 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
              130       140       150       160       170       180

              190       200       210    
pF1KB8 LEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
       ::::::::::::::::::::::::::::::::::
NP_877 LEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
              190       200       210    

>>XP_016868438 (OMIM: 608073) PREDICTED: nucleoplasmin-2  (214 aa)
 initn: 1380 init1: 1380 opt: 1380  Z-score: 923.0  bits: 177.9 E(85289): 1.1e-44
Smith-Waterman score: 1380; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KB8 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
              130       140       150       160       170       180

              190       200       210    
pF1KB8 LEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
       ::::::::::::::::::::::::::::::::::
XP_016 LEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
              190       200       210    

>>XP_011542664 (OMIM: 608073) PREDICTED: nucleoplasmin-2  (214 aa)
 initn: 1380 init1: 1380 opt: 1380  Z-score: 923.0  bits: 177.9 E(85289): 1.1e-44
Smith-Waterman score: 1380; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KB8 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
              130       140       150       160       170       180

              190       200       210    
pF1KB8 LEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
       ::::::::::::::::::::::::::::::::::
XP_011 LEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
              190       200       210    

>>XP_016868437 (OMIM: 608073) PREDICTED: nucleoplasmin-2  (214 aa)
 initn: 1380 init1: 1380 opt: 1380  Z-score: 923.0  bits: 177.9 E(85289): 1.1e-44
Smith-Waterman score: 1380; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KB8 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
              130       140       150       160       170       180

              190       200       210    
pF1KB8 LEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
       ::::::::::::::::::::::::::::::::::
XP_016 LEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
              190       200       210    

>>NP_001273609 (OMIM: 608073) nucleoplasmin-2 isoform 1   (214 aa)
 initn: 1380 init1: 1380 opt: 1380  Z-score: 923.0  bits: 177.9 E(85289): 1.1e-44
Smith-Waterman score: 1380; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KB8 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
              130       140       150       160       170       180

              190       200       210    
pF1KB8 LEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
       ::::::::::::::::::::::::::::::::::
NP_001 LEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
              190       200       210    

>>XP_011542665 (OMIM: 608073) PREDICTED: nucleoplasmin-2  (214 aa)
 initn: 1380 init1: 1380 opt: 1380  Z-score: 923.0  bits: 177.9 E(85289): 1.1e-44
Smith-Waterman score: 1380; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KB8 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
              130       140       150       160       170       180

              190       200       210    
pF1KB8 LEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
       ::::::::::::::::::::::::::::::::::
XP_011 LEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
              190       200       210    

>>XP_011542662 (OMIM: 608073) PREDICTED: nucleoplasmin-2  (289 aa)
 initn: 1268 init1: 1268 opt: 1268  Z-score: 848.4  bits: 164.5 E(85289): 1.6e-40
Smith-Waterman score: 1268; 100.0% identity (100.0% similar) in 195 aa overlap (20-214:95-289)

                          10        20        30        40         
pF1KB8            MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTI
                                     ::::::::::::::::::::::::::::::
XP_011 PPGSPPHPTCPLRLSAGDLTVLETGLARSHGCELSQERRTWTFRPQLEGKQSCRLLLHTI
           70        80        90       100       110       120    

      50        60        70        80        90       100         
pF1KB8 CLGEKAKEEMHRVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CLGEKAKEEMHRVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAG
          130       140       150       160       170       180    

     110       120       130       140       150       160         
pF1KB8 SGPVFLSGQERYEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SGPVFLSGQERYEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVP
          190       200       210       220       230       240    

     170       180       190       200       210    
pF1KB8 QKQASVAKKKKLEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
       :::::::::::::::::::::::::::::::::::::::::::::
XP_011 QKQASVAKKKKLEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
          250       260       270       280         

>>XP_011542666 (OMIM: 608073) PREDICTED: nucleoplasmin-2  (156 aa)
 initn: 994 init1: 994 opt: 994  Z-score: 674.0  bits: 131.3 E(85289): 8.4e-31
Smith-Waterman score: 994; 100.0% identity (100.0% similar) in 156 aa overlap (59-214:1-156)

       30        40        50        60        70        80        
pF1KB8 TWTFRPQLEGKQSCRLLLHTICLGEKAKEEMHRVEILPPANQEDKKMQPVTIASLQASVL
                                     ::::::::::::::::::::::::::::::
XP_011                               MHRVEILPPANQEDKKMQPVTIASLQASVL
                                             10        20        30

       90       100       110       120       130       140        
pF1KB8 PMVSMVGVQLSPPVTFQLRAGSGPVFLSGQERYEASDLTWEEEEEEEGEEEEEEEEDDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PMVSMVGVQLSPPVTFQLRAGSGPVFLSGQERYEASDLTWEEEEEEEGEEEEEEEEDDED
               40        50        60        70        80        90

      150       160       170       180       190       200        
pF1KB8 EDADISLEEQSPVKQVKRLVPQKQASVAKKKKLEKEEEEIRASVRDKSPVKKAKATARAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDADISLEEQSPVKQVKRLVPQKQASVAKKKKLEKEEEEIRASVRDKSPVKKAKATARAK
              100       110       120       130       140       150

      210    
pF1KB8 KPGFKK
       ::::::
XP_011 KPGFKK
             

>>NP_001273610 (OMIM: 608073) nucleoplasmin-2 isoform 2   (136 aa)
 initn: 804 init1: 804 opt: 804  Z-score: 551.2  bits: 108.4 E(85289): 5.8e-24
Smith-Waterman score: 804; 100.0% identity (100.0% similar) in 122 aa overlap (1-122:1-122)

               10        20        30        40        50        60
pF1KB8 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
       ::                                                          
NP_001 YEKKAGKRRRGNKSQR                                            
              130                                                  

>>XP_016868439 (OMIM: 608073) PREDICTED: nucleoplasmin-2  (172 aa)
 initn: 789 init1: 789 opt: 789  Z-score: 540.1  bits: 106.7 E(85289): 2.4e-23
Smith-Waterman score: 1012; 80.4% identity (80.4% similar) in 214 aa overlap (1-214:1-172)

               10        20        30        40        50        60
pF1KB8 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMH
       ::::::::::::::::::::::::::::::::::::::::::::::::            
XP_016 MNLSSASSTEEKAVTTVLWGCELSQERRTWTFRPQLEGKQSCRLLLHT------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KB8 RVEILPPANQEDKKMQPVTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQER
                                     ::::::::::::::::::::::::::::::
XP_016 ------------------------------VSMVGVQLSPPVTFQLRAGSGPVFLSGQER
                                     50        60        70        

              130       140       150       160       170       180
pF1KB8 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YEASDLTWEEEEEEEGEEEEEEEEDDEDEDADISLEEQSPVKQVKRLVPQKQASVAKKKK
       80        90       100       110       120       130        

              190       200       210    
pF1KB8 LEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
       ::::::::::::::::::::::::::::::::::
XP_016 LEKEEEEIRASVRDKSPVKKAKATARAKKPGFKK
      140       150       160       170  




214 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:43:59 2016 done: Fri Nov  4 09:44:00 2016
 Total Scan time:  5.830 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com