FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8109, 153 aa 1>>>pF1KB8109 153 - 153 aa - 153 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1577+/-0.000255; mu= 13.2948+/- 0.016 mean_var=61.7573+/-12.107, 0's: 0 Z-trim(120.7): 2 B-trim: 231 in 1/57 Lambda= 0.163204 statistics sampled from 36271 (36273) to 36271 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.425), width: 16 Scan time: 4.420 The best scores are: opt bits E(85289) NP_005861 (OMIM: 602949) histone deacetylase compl ( 172) 1024 248.5 3.6e-66 XP_011533170 (OMIM: 602949) PREDICTED: histone dea ( 104) 615 152.1 2.3e-37 >>NP_005861 (OMIM: 602949) histone deacetylase complex s (172 aa) initn: 1024 init1: 1024 opt: 1024 Z-score: 1309.0 bits: 248.5 E(85289): 3.6e-66 Smith-Waterman score: 1024; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:20-172) 10 20 30 40 pF1KB8 MAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHH ::::::::::::::::::::::::::::::::::::::::: NP_005 MLAAGVGGQGERLAGRRRKMAVESRVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHH 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB8 RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 RMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGY 70 80 90 100 110 120 110 120 130 140 150 pF1KB8 RVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 RVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGRMRPY 130 140 150 160 170 >>XP_011533170 (OMIM: 602949) PREDICTED: histone deacety (104 aa) initn: 612 init1: 612 opt: 615 Z-score: 791.9 bits: 152.1 E(85289): 2.3e-37 Smith-Waterman score: 615; 94.9% identity (96.9% similar) in 98 aa overlap (56-153:7-104) 30 40 50 60 70 80 pF1KB8 CPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGT .:. :::::::::::::::::::::::: XP_011 MMYKIVFQLCIRMDATLKELTSLVKEVYPEARKKGT 10 20 30 90 100 110 120 130 140 pF1KB8 HFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 HFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPP 40 50 60 70 80 90 150 pF1KB8 PSGRMRPY :::::::: XP_011 PSGRMRPY 100 153 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 09:35:28 2016 done: Fri Nov 4 09:35:29 2016 Total Scan time: 4.420 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]