Result of FASTA (omim) for pF1KB8105
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8105, 117 aa
  1>>>pF1KB8105 117 - 117 aa - 117 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8095+/-0.000294; mu= 12.7491+/- 0.018
 mean_var=53.9627+/-10.815, 0's: 0 Z-trim(117.2): 18  B-trim: 5 in 1/55
 Lambda= 0.174593
 statistics sampled from 28968 (28986) to 28968 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.34), width:  16
 Scan time:  3.510

The best scores are:                                      opt bits E(85289)
NP_113600 (OMIM: 607420) gamma-aminobutyric acid r ( 117)  793 206.9 6.1e-54
NP_009209 (OMIM: 605125) gamma-aminobutyric acid r ( 117)  698 183.0 9.8e-47
XP_005253401 (OMIM: 607420) PREDICTED: gamma-amino ( 146)  650 170.9 5.1e-43
NP_009216 (OMIM: 607452) gamma-aminobutyric acid r ( 117)  479 127.8 3.9e-30
NP_001004343 (OMIM: 609605) microtubule-associated ( 147)  309 85.0 3.7e-17
XP_005273196 (OMIM: 609605) PREDICTED: microtubule ( 147)  309 85.0 3.7e-17
NP_115903 (OMIM: 601242) microtubule-associated pr ( 121)  270 75.2 2.8e-14
XP_011527387 (OMIM: 601242) PREDICTED: microtubule ( 182)  270 75.3   4e-14
XP_011527385 (OMIM: 601242) PREDICTED: microtubule ( 223)  270 75.3 4.8e-14
XP_011527386 (OMIM: 601242) PREDICTED: microtubule ( 223)  270 75.3 4.8e-14
NP_852610 (OMIM: 601242) microtubule-associated pr ( 125)  257 71.9 2.8e-13
NP_073729 (OMIM: 609604) microtubule-associated pr ( 125)  255 71.4   4e-13


>>NP_113600 (OMIM: 607420) gamma-aminobutyric acid recep  (117 aa)
 initn: 793 init1: 793 opt: 793  Z-score: 1089.4  bits: 206.9 E(85289): 6.1e-54
Smith-Waterman score: 793; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)

               10        20        30        40        50        60
pF1KB8 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
               10        20        30        40        50        60

               70        80        90       100       110       
pF1KB8 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK
               70        80        90       100       110       

>>NP_009209 (OMIM: 605125) gamma-aminobutyric acid recep  (117 aa)
 initn: 698 init1: 698 opt: 698  Z-score: 960.1  bits: 183.0 E(85289): 9.8e-47
Smith-Waterman score: 698; 87.1% identity (96.6% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KB8 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
       ::: :::.:::: :..::::::::::::::::::::::::. ::::.:::::::::::::
NP_009 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
               10        20        30        40        50        60

               70        80        90       100       110       
pF1KB8 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK
       ::::::::::: ::::::::::.::::::::::::...::::.:::.::::::::: 
NP_009 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL
               70        80        90       100       110       

>>XP_005253401 (OMIM: 607420) PREDICTED: gamma-aminobuty  (146 aa)
 initn: 650 init1: 650 opt: 650  Z-score: 893.3  bits: 170.9 E(85289): 5.1e-43
Smith-Waterman score: 650; 100.0% identity (100.0% similar) in 96 aa overlap (1-96:1-96)

               10        20        30        40        50        60
pF1KB8 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KB8 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK   
       ::::::::::::::::::::::::::::::::::::                        
XP_005 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEVMVLVAQYWMPSSAVWHPLALVLD
               70        80        90       100       110       120

XP_005 ALITHLRSGAEGVIYPDPLTYGSVRL
              130       140      

>>NP_009216 (OMIM: 607452) gamma-aminobutyric acid recep  (117 aa)
 initn: 514 init1: 479 opt: 479  Z-score: 661.9  bits: 127.8 E(85289): 3.9e-30
Smith-Waterman score: 479; 61.2% identity (86.2% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KB8 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
       ::...:::: .:.:  :. ::: ::::::::::::.  ... :.::::::::::.::.::
NP_009 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF
               10        20        30        40        50        60

               70        80        90       100       110       
pF1KB8 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK
       ...:::::.:  : :.:.::..:.: .: ::::::: ...:: ::::::: :...: 
NP_009 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF
               70        80        90       100       110       

>>NP_001004343 (OMIM: 609605) microtubule-associated pro  (147 aa)
 initn: 308 init1: 142 opt: 309  Z-score: 429.0  bits: 85.0 E(85289): 3.7e-17
Smith-Waterman score: 309; 39.5% identity (76.3% similar) in 114 aa overlap (5-116:13-126)

                       10        20        30        40         50 
pF1KB8         MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKAR-VPDLDKRKYLV
                   .:. . .  :..:   :: :.:...::.::. :.   .: ::: :.::
NP_001 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
               10        20        30        40        50        60

              60        70        80         90       100       110
pF1KB8 PSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNHEEDYFLYVAYS
       :..::. ::  .::.:. ::  .:....::: ..   ::::...:.: ..:: :.:..:.
NP_001 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
               70        80        90       100       110       120

                                  
pF1KB8 DESVYGK                    
       .. ..:                     
NP_001 SQETFGCLESAAPRDGSSLEDRPCNPL
              130       140       

>>XP_005273196 (OMIM: 609605) PREDICTED: microtubule-ass  (147 aa)
 initn: 308 init1: 142 opt: 309  Z-score: 429.0  bits: 85.0 E(85289): 3.7e-17
Smith-Waterman score: 309; 39.5% identity (76.3% similar) in 114 aa overlap (5-116:13-126)

                       10        20        30        40         50 
pF1KB8         MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKAR-VPDLDKRKYLV
                   .:. . .  :..:   :: :.:...::.::. :.   .: ::: :.::
XP_005 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
               10        20        30        40        50        60

              60        70        80         90       100       110
pF1KB8 PSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNHEEDYFLYVAYS
       :..::. ::  .::.:. ::  .:....::: ..   ::::...:.: ..:: :.:..:.
XP_005 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
               70        80        90       100       110       120

                                  
pF1KB8 DESVYGK                    
       .. ..:                     
XP_005 SQETFGCLESAAPRDGSSLEDRPCNPL
              130       140       

>>NP_115903 (OMIM: 601242) microtubule-associated protei  (121 aa)
 initn: 260 init1: 123 opt: 270  Z-score: 377.2  bits: 75.2 E(85289): 2.8e-14
Smith-Waterman score: 270; 34.2% identity (78.9% similar) in 114 aa overlap (5-116:7-120)

                 10        20        30         40        50       
pF1KB8   MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTV
             .:. . :  : :: ..:: ..:...:::.:.   . ..: ::: :.:::. ...
NP_115 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
               10        20        30        40        50        60

        60        70        80         90       100       110      
pF1KB8 GQFYFLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG
       ...  .::.:..: : .:.:..:: ...  .:. ....::....:: :::..:... ..:
NP_115 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
               70        80        90       100       110       120

        
pF1KB8 K
        
NP_115 F
        

>>XP_011527387 (OMIM: 601242) PREDICTED: microtubule-ass  (182 aa)
 initn: 260 init1: 123 opt: 270  Z-score: 374.5  bits: 75.3 E(85289): 4e-14
Smith-Waterman score: 270; 34.2% identity (78.9% similar) in 114 aa overlap (5-116:68-181)

                                         10        20        30    
pF1KB8                           MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVE
                                     .:. . :  : :: ..:: ..:...:::.:
XP_011 RSPQTADTSPRPRAPACAPSRARAMPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIE
        40        50        60        70        80        90       

            40        50        60        70        80         90  
pF1KB8 KAP-KARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN-NTIPPTSATMG
       .   . ..: ::: :.:::. ......  .::.:..: : .:.:..:: ...  .:. ..
XP_011 RYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIA
       100       110       120       130       140       150       

            100       110       
pF1KB8 QLYEDNHEEDYFLYVAYSDESVYGK
       ..::....:: :::..:... ..: 
XP_011 DIYEQEKDEDGFLYMVYASQETFGF
       160       170       180  

>>XP_011527385 (OMIM: 601242) PREDICTED: microtubule-ass  (223 aa)
 initn: 260 init1: 123 opt: 270  Z-score: 373.2  bits: 75.3 E(85289): 4.8e-14
Smith-Waterman score: 270; 34.2% identity (78.9% similar) in 114 aa overlap (5-116:109-222)

                                         10        20        30    
pF1KB8                           MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVE
                                     .:. . :  : :: ..:: ..:...:::.:
XP_011 RSPQTADTSPRPRAPACAPSRARAMPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIE
       80        90       100       110       120       130        

            40        50        60        70        80         90  
pF1KB8 KAP-KARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN-NTIPPTSATMG
       .   . ..: ::: :.:::. ......  .::.:..: : .:.:..:: ...  .:. ..
XP_011 RYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIA
      140       150       160       170       180       190        

            100       110       
pF1KB8 QLYEDNHEEDYFLYVAYSDESVYGK
       ..::....:: :::..:... ..: 
XP_011 DIYEQEKDEDGFLYMVYASQETFGF
      200       210       220   

>>XP_011527386 (OMIM: 601242) PREDICTED: microtubule-ass  (223 aa)
 initn: 260 init1: 123 opt: 270  Z-score: 373.2  bits: 75.3 E(85289): 4.8e-14
Smith-Waterman score: 270; 34.2% identity (78.9% similar) in 114 aa overlap (5-116:109-222)

                                         10        20        30    
pF1KB8                           MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVE
                                     .:. . :  : :: ..:: ..:...:::.:
XP_011 RSPQTADTSPRPRAPACAPSRARAMPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIE
       80        90       100       110       120       130        

            40        50        60        70        80         90  
pF1KB8 KAP-KARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN-NTIPPTSATMG
       .   . ..: ::: :.:::. ......  .::.:..: : .:.:..:: ...  .:. ..
XP_011 RYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIA
      140       150       160       170       180       190        

            100       110       
pF1KB8 QLYEDNHEEDYFLYVAYSDESVYGK
       ..::....:: :::..:... ..: 
XP_011 DIYEQEKDEDGFLYMVYASQETFGF
      200       210       220   




117 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:31:09 2016 done: Fri Nov  4 09:31:10 2016
 Total Scan time:  3.510 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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