Result of FASTA (ccds) for pF1KB8105
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8105, 117 aa
  1>>>pF1KB8105 117 - 117 aa - 117 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0297+/-0.000597; mu= 11.2713+/- 0.036
 mean_var=53.5514+/-10.834, 0's: 0 Z-trim(110.3): 13  B-trim: 615 in 1/52
 Lambda= 0.175262
 statistics sampled from 11471 (11482) to 11471 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.353), width:  16
 Scan time:  1.110

The best scores are:                                      opt bits E(32554)
CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12     ( 117)  793 207.7 1.4e-54
CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17      ( 117)  698 183.7 2.3e-47
CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16    ( 117)  479 128.3 1.1e-30
CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1     ( 147)  309 85.3 1.1e-17
CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20     ( 121)  270 75.4   9e-15
CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20     ( 125)  257 72.2   9e-14
CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16     ( 125)  255 71.7 1.3e-13
CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12   ( 125)  244 68.9 8.8e-13


>>CCDS8620.1 GABARAPL1 gene_id:23710|Hs108|chr12          (117 aa)
 initn: 793 init1: 793 opt: 793  Z-score: 1093.6  bits: 207.7 E(32554): 1.4e-54
Smith-Waterman score: 793; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)

               10        20        30        40        50        60
pF1KB8 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
               10        20        30        40        50        60

               70        80        90       100       110       
pF1KB8 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK
               70        80        90       100       110       

>>CCDS11092.1 GABARAP gene_id:11337|Hs108|chr17           (117 aa)
 initn: 698 init1: 698 opt: 698  Z-score: 963.8  bits: 183.7 E(32554): 2.3e-47
Smith-Waterman score: 698; 87.1% identity (96.6% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KB8 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
       ::: :::.:::: :..::::::::::::::::::::::::. ::::.:::::::::::::
CCDS11 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF
               10        20        30        40        50        60

               70        80        90       100       110       
pF1KB8 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK
       ::::::::::: ::::::::::.::::::::::::...::::.:::.::::::::: 
CCDS11 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYGL
               70        80        90       100       110       

>>CCDS10921.1 GABARAPL2 gene_id:11345|Hs108|chr16         (117 aa)
 initn: 514 init1: 479 opt: 479  Z-score: 664.6  bits: 128.3 E(32554): 1.1e-30
Smith-Waterman score: 479; 61.2% identity (86.2% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KB8 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF
       ::...:::: .:.:  :. ::: ::::::::::::.  ... :.::::::::::.::.::
CCDS10 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF
               10        20        30        40        50        60

               70        80        90       100       110       
pF1KB8 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYGK
       ...:::::.:  : :.:.::..:.: .: ::::::: ...:: ::::::: :...: 
CCDS10 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF
               70        80        90       100       110       

>>CCDS31074.1 MAP1LC3C gene_id:440738|Hs108|chr1          (147 aa)
 initn: 308 init1: 142 opt: 309  Z-score: 430.7  bits: 85.3 E(32554): 1.1e-17
Smith-Waterman score: 309; 39.5% identity (76.3% similar) in 114 aa overlap (5-116:13-126)

                       10        20        30        40         50 
pF1KB8         MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKAR-VPDLDKRKYLV
                   .:. . .  :..:   :: :.:...::.::. :.   .: ::: :.::
CCDS31 MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLV
               10        20        30        40        50        60

              60        70        80         90       100       110
pF1KB8 PSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-TIPPTSATMGQLYEDNHEEDYFLYVAYS
       :..::. ::  .::.:. ::  .:....::: ..   ::::...:.: ..:: :.:..:.
CCDS31 PQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYA
               70        80        90       100       110       120

                                  
pF1KB8 DESVYGK                    
       .. ..:                     
CCDS31 SQETFGCLESAAPRDGSSLEDRPCNPL
              130       140       

>>CCDS13238.1 MAP1LC3A gene_id:84557|Hs108|chr20          (121 aa)
 initn: 260 init1: 123 opt: 270  Z-score: 378.7  bits: 75.4 E(32554): 9e-15
Smith-Waterman score: 270; 34.2% identity (78.9% similar) in 114 aa overlap (5-116:7-120)

                 10        20        30         40        50       
pF1KB8   MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTV
             .:. . :  : :: ..:: ..:...:::.:.   . ..: ::: :.:::. ...
CCDS13 MPSDRPFKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
               10        20        30        40        50        60

        60        70        80         90       100       110      
pF1KB8 GQFYFLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG
       ...  .::.:..: : .:.:..:: ...  .:. ....::....:: :::..:... ..:
CCDS13 SELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG
               70        80        90       100       110       120

        
pF1KB8 K
        
CCDS13 F
        

>>CCDS13237.1 MAP1LC3A gene_id:84557|Hs108|chr20          (125 aa)
 initn: 247 init1: 123 opt: 257  Z-score: 360.7  bits: 72.2 E(32554): 9e-14
Smith-Waterman score: 257; 35.2% identity (81.0% similar) in 105 aa overlap (14-116:20-124)

                     10        20        30         40        50   
pF1KB8       MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPS
                          : :: ..:: ..:...:::.:.   . ..: ::: :.:::.
CCDS13 MKMRFFSSPCGKAAVDPADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPD
               10        20        30        40        50        60

            60        70        80         90       100       110  
pF1KB8 DLTVGQFYFLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDE
        ......  .::.:..: : .:.:..:: ...  .:. ....::....:: :::..:...
CCDS13 HVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQ
               70        80        90       100       110       120

            
pF1KB8 SVYGK
        ..: 
CCDS13 ETFGF
            

>>CCDS10960.1 MAP1LC3B gene_id:81631|Hs108|chr16          (125 aa)
 initn: 244 init1: 113 opt: 255  Z-score: 358.0  bits: 71.7 E(32554): 1.3e-13
Smith-Waterman score: 255; 32.5% identity (78.9% similar) in 114 aa overlap (5-116:7-120)

                 10        20        30         40        50       
pF1KB8   MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTV
             .:. . :: : .. . ::...: ..:::.:.   . ..: ::: :.:::. ...
CCDS10 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
               10        20        30        40        50        60

        60        70        80         90       100       110      
pF1KB8 GQFYFLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG
       ...  .::.:..:  ..:.:..:: ...  .:. ....::....:: :::..:... ..:
CCDS10 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG
               70        80        90       100       110       120

            
pF1KB8 K    
            
CCDS10 MKLSV
            

>>CCDS41841.1 MAP1LC3B2 gene_id:643246|Hs108|chr12        (125 aa)
 initn: 233 init1: 113 opt: 244  Z-score: 343.0  bits: 68.9 E(32554): 8.8e-13
Smith-Waterman score: 244; 31.6% identity (78.1% similar) in 114 aa overlap (5-116:7-120)

                 10        20        30         40        50       
pF1KB8   MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAP-KARVPDLDKRKYLVPSDLTV
             .:. . :: : .. . ::...: ..:::.:.   . ..: ::: :.:::. ...
CCDS41 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNM
               10        20        30        40        50        60

        60        70        80         90       100       110      
pF1KB8 GQFYFLIRKRIHLRPEDALFFFVN-NTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG
       ...  .::.:..:  ..:.:..:: ...  .:. ....::....:: :::.. ... ..:
CCDS41 SELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG
               70        80        90       100       110       120

            
pF1KB8 K    
            
CCDS41 MKLSV
            




117 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:31:08 2016 done: Fri Nov  4 09:31:09 2016
 Total Scan time:  1.110 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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