Result of FASTA (omim) for pF1KB8101
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8101, 447 aa
  1>>>pF1KB8101 447 - 447 aa - 447 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2393+/-0.000455; mu= 17.7572+/- 0.028
 mean_var=65.8199+/-12.959, 0's: 0 Z-trim(109.0): 37  B-trim: 0 in 0/53
 Lambda= 0.158087
 statistics sampled from 17089 (17115) to 17089 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.566), E-opt: 0.2 (0.201), width:  16
 Scan time:  6.180

The best scores are:                                      opt bits E(85289)
NP_001484 (OMIM: 300104,300849) rab GDP dissociati ( 447) 2986 690.4 2.5e-198
NP_001485 (OMIM: 600767) rab GDP dissociation inhi ( 445) 2642 612.0  1e-174
XP_016871560 (OMIM: 600767) PREDICTED: rab GDP dis ( 423) 2507 581.2 1.8e-165
NP_001108628 (OMIM: 600767) rab GDP dissociation i ( 400) 1864 434.5 2.4e-121
NP_001812 (OMIM: 118825) rab proteins geranylgeran ( 656)  435 108.7 4.7e-23
XP_016884732 (OMIM: 300390,303100) PREDICTED: rab  ( 505)  399 100.4 1.1e-20
XP_016884735 (OMIM: 300390,303100) PREDICTED: rab  ( 505)  399 100.4 1.1e-20
NP_001307888 (OMIM: 300390,303100) rab proteins ge ( 505)  399 100.4 1.1e-20
XP_016884734 (OMIM: 300390,303100) PREDICTED: rab  ( 505)  399 100.4 1.1e-20
XP_016884733 (OMIM: 300390,303100) PREDICTED: rab  ( 505)  399 100.4 1.1e-20
XP_016884731 (OMIM: 300390,303100) PREDICTED: rab  ( 602)  399 100.5 1.3e-20
NP_000381 (OMIM: 300390,303100) rab proteins geran ( 653)  399 100.5 1.4e-20
NP_001138886 (OMIM: 300390,303100) rab proteins ge ( 110)  154 44.2 0.00021


>>NP_001484 (OMIM: 300104,300849) rab GDP dissociation i  (447 aa)
 initn: 2986 init1: 2986 opt: 2986  Z-score: 3681.8  bits: 690.4 E(85289): 2.5e-198
Smith-Waterman score: 2986; 100.0% identity (100.0% similar) in 447 aa overlap (1-447:1-447)

               10        20        30        40        50        60
pF1KB8 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI
              370       380       390       400       410       420

              430       440       
pF1KB8 YKRMAGTAFDFENMKRKQNDVFGEAEQ
       :::::::::::::::::::::::::::
NP_001 YKRMAGTAFDFENMKRKQNDVFGEAEQ
              430       440       

>>NP_001485 (OMIM: 600767) rab GDP dissociation inhibito  (445 aa)
 initn: 2642 init1: 2642 opt: 2642  Z-score: 3257.8  bits: 612.0 E(85289): 1e-174
Smith-Waterman score: 2642; 86.5% identity (96.8% similar) in 444 aa overlap (1-444:1-444)

               10        20        30        40        50        60
pF1KB8 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE
       :.:::::::::::::::::::::::::::::::::::::::::.::::::.:::::..  
NP_001 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP
       .:::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
NP_001 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD
       :::.:::::.:::.:::::::::::.::::::.::.::::.::. :.:::::.:::::::
NP_001 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
       :::::::::::::::::::::: ::.::::::::::::::::::::::::::::::::::
NP_001 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI
       ::::::::::::::...::..::::.:::::::.::::::::::::. :::.:.:::::.
NP_001 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::.:::::: 
NP_001 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI
       .::::..:::::::::.::::.::::  : : : :::.: : .:::::::::::.:::.:
NP_001 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI
              370       380       390       400       410       420

              430       440       
pF1KB8 YKRMAGTAFDFENMKRKQNDVFGEAEQ
       ::::.:. ::::.::::.::..::   
NP_001 YKRMTGSEFDFEEMKRKKNDIYGED  
              430       440       

>>XP_016871560 (OMIM: 600767) PREDICTED: rab GDP dissoci  (423 aa)
 initn: 2507 init1: 2507 opt: 2507  Z-score: 3091.7  bits: 581.2 E(85289): 1.8e-165
Smith-Waterman score: 2507; 86.0% identity (96.7% similar) in 422 aa overlap (23-444:1-422)

               10        20        30        40        50        60
pF1KB8 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE
                             :::::::::::::::::::::.::::::.:::::..  
XP_016                       MSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG
                                     10        20        30        

               70        80        90       100       110       120
pF1KB8 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP
       .:::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
XP_016 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP
       40        50        60        70        80        90        

              130       140       150       160       170       180
pF1KB8 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD
       :::.:::::.:::.:::::::::::.::::::.::.::::.::. :.:::::.:::::::
XP_016 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD
      100       110       120       130       140       150        

              190       200       210       220       230       240
pF1KB8 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
       :::::::::::::::::::::: ::.::::::::::::::::::::::::::::::::::
XP_016 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
      160       170       180       190       200       210        

              250       260       270       280       290       300
pF1KB8 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI
       ::::::::::::::...::..::::.:::::::.::::::::::::. :::.:.:::::.
XP_016 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
      220       230       240       250       260       270        

              310       320       330       340       350       360
pF1KB8 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::.:::::: 
XP_016 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK
      280       290       300       310       320       330        

              370       380       390       400       410       420
pF1KB8 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI
       .::::..:::::::::.::::.::::  : : : :::.: : .:::::::::::.:::.:
XP_016 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI
      340       350       360       370       380       390        

              430       440       
pF1KB8 YKRMAGTAFDFENMKRKQNDVFGEAEQ
       ::::.:. ::::.::::.::..::   
XP_016 YKRMTGSEFDFEEMKRKKNDIYGED  
      400       410       420     

>>NP_001108628 (OMIM: 600767) rab GDP dissociation inhib  (400 aa)
 initn: 1862 init1: 1862 opt: 1864  Z-score: 2299.5  bits: 434.5 E(85289): 2.4e-121
Smith-Waterman score: 2281; 77.0% identity (86.7% similar) in 444 aa overlap (1-444:1-399)

               10        20        30        40        50        60
pF1KB8 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE
       :.:::::::::::::::::::::::::::::::::::::::::.::::::.:::::..  
NP_001 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP
       .::::::::::::::::::::::::                                   
NP_001 SPPESMGRGRDWNVDLIPKFLMANG-----------------------------------
               70        80                                        

              130       140       150       160       170       180
pF1KB8 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD
                 :::.:::::::::::.::::::.::.::::.::. :.:::::.:::::::
NP_001 ----------LMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD
                    90       100       110       120       130     

              190       200       210       220       230       240
pF1KB8 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
       :::::::::::::::::::::: ::.::::::::::::::::::::::::::::::::::
NP_001 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR
         140       150       160       170       180       190     

              250       260       270       280       290       300
pF1KB8 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI
       ::::::::::::::...::..::::.:::::::.::::::::::::. :::.:.:::::.
NP_001 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV
         200       210       220       230       240       250     

              310       320       330       340       350       360
pF1KB8 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT
       ::::::::::::::::::::::::::::::::::::::.:::::::::::::.:::::: 
NP_001 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK
         260       270       280       290       300       310     

              370       380       390       400       410       420
pF1KB8 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI
       .::::..:::::::::.::::.::::  : : : :::.: : .:::::::::::.:::.:
NP_001 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI
         320       330       340       350       360       370     

              430       440       
pF1KB8 YKRMAGTAFDFENMKRKQNDVFGEAEQ
       ::::.:. ::::.::::.::..::   
NP_001 YKRMTGSEFDFEEMKRKKNDIYGED  
         380       390       400  

>>NP_001812 (OMIM: 118825) rab proteins geranylgeranyltr  (656 aa)
 initn: 456 init1: 213 opt: 435  Z-score: 534.9  bits: 108.7 E(85289): 4.7e-23
Smith-Waterman score: 435; 25.1% identity (60.4% similar) in 331 aa overlap (69-389:226-546)

       40        50        60        70        80        90        
pF1KB8 YGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTR
                                     :: .:.::. :.:...: :. .:. ..:.:
NP_001 GDKDESKSTVEDKADEPIRNRITYSQIVKEGRRFNIDLVSKLLYSQGLLIDLLIKSDVSR
         200       210       220       230       240       250     

      100       110       120       130       140       150        
pF1KB8 YLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF
       :..:: :   .... ::. .:: ...... :. . : ::: . :::.:  ..... :  .
NP_001 YVEFKNVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRMLMKFLTFCLEYEQH-PDEY
         260       270       280       290       300       310     

      160       170       180       190       200         210      
pF1KB8 EGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPC--LETVNRIKLYSESL
       ..   .  :. .  .   :  ..  :. :..:.       .. :  .. .:  : . . :
NP_001 QAF--RQCSFSEYLKTKKLTPNLQHFVLHSIAMTS-----ESSCTTIDGLNATKNFLQCL
            320       330       340            350       360       

        220       230       240       250       260         270    
pF1KB8 ARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM--ENGKVVGVKSE-GE
       .:.:..:.:.:::: ::.:::: :. :..:: : : . :. ...  :.:.  .. .. :.
NP_001 GRFGNTPFLFPLYGQGEIPQGFCRMCAVFGGIYCLRHKVQCFVVDKESGRCKAIIDHFGQ
       370       380       390       400       410       420       

           280       290          300       310        320         
pF1KB8 VARCKQLICDPSYIPDRV---RKAGQVIRIICILSHPIKNTN-DANSCQIIIPQNQVNRK
           : .: . ::. ...    .  :. : . : .. : .:. : ..  .:.:  . .  
NP_001 RINAKYFIVEDSYLSEETCSNVQYKQISRAVLITDQSILKTDLDQQTSILIVPPAEPG-A
       430       440       450       460       470       480       

     330       340       350       360       370        380        
pF1KB8 SDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALE-LLEPIDQKFVAISDLYE
         . :  .  .  .  .  :. .  :   .   ....: ... :. :  .  .   .: .
NP_001 CAVRVTELCSSTMTCMKDTYL-VHLTCSSSKTAREDLESVVKKLFTPYTETEINEEELTK
        490       500        510       520       530       540     

      390       400       410       420       430       440        
pF1KB8 PIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRKQNDVFGEAEQ 
       :                                                           
NP_001 PRLLWALYFNMRDSSGISRSSYNGLPSNVYVCSGPDCGLGNEHAVKQAETLFQEIFPTEE
         550       560       570       580       590       600     

>>XP_016884732 (OMIM: 300390,303100) PREDICTED: rab prot  (505 aa)
 initn: 362 init1: 203 opt: 399  Z-score: 492.2  bits: 100.4 E(85289): 1.1e-20
Smith-Waterman score: 399; 26.0% identity (59.9% similar) in 327 aa overlap (69-386:76-386)

       40        50        60        70        80        90        
pF1KB8 YGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTR
                                     :: .:.::. :.:.. : :. .:. ..:.:
XP_016 EDMSENVPIAEDTTEQPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSR
          50        60        70        80        90       100     

      100       110       120       130       140       150        
pF1KB8 YLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF
       : .:: .   .... :.. .:: ...... :. . : ::: . :::.:  .. :. :  .
XP_016 YAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEY
         110       120       130       140       150        160    

      160       170       180       190       200       210        
pF1KB8 EGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLAR
       .: .  :  . .  .   :  ..  .. :..:.    .   .  .. ..  : . . :.:
XP_016 KGYEEIT--FYEYLKTQKLTPNLQYIVMHSIAM---TSETASSTIDGLKATKNFLHCLGR
          170         180       190          200       210         

      220       230       240       250       260         270      
pF1KB8 YGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM--ENGKVVGVKSE-GEVA
       ::..:.:.:::: ::::: : :. :..:: : : . :. ...  :. :  .. .. :.  
XP_016 YGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRI
     220       230       240       250       260       270         

         280           290       300       310       320        330
pF1KB8 RCKQLICDPSYIPD----RVRKAGQVIRIICILSHPIKNTNDANSCQII-IPQNQVNRKS
         .... . ::.:.    :: .  :. : . : .. . .:.. .. .:. .: .. .  .
XP_016 ISEHFLVEDSYFPENMCSRV-QYRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA
     280       290        300       310       320       330        

              340       350       360       370        380         
pF1KB8 DIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQK-FVAISDLYEP
        . :  .  .  .  .: :..  . :   :        : : :: . :: ::  ...   
XP_016 -VRVIELCSSTMTCMKGTYLVHLTCTSSKT--------AREDLESVVQKLFVPYTEMEIE
       340       350       360               370       380         

     390       400       410       420       430       440         
pF1KB8 IDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRKQNDVFGEAEQ  
                                                                   
XP_016 NEQVEKPRILWALYFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQE
     390       400       410       420       430       440         

>>XP_016884735 (OMIM: 300390,303100) PREDICTED: rab prot  (505 aa)
 initn: 362 init1: 203 opt: 399  Z-score: 492.2  bits: 100.4 E(85289): 1.1e-20
Smith-Waterman score: 399; 26.0% identity (59.9% similar) in 327 aa overlap (69-386:76-386)

       40        50        60        70        80        90        
pF1KB8 YGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTR
                                     :: .:.::. :.:.. : :. .:. ..:.:
XP_016 EDMSENVPIAEDTTEQPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSR
          50        60        70        80        90       100     

      100       110       120       130       140       150        
pF1KB8 YLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF
       : .:: .   .... :.. .:: ...... :. . : ::: . :::.:  .. :. :  .
XP_016 YAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEY
         110       120       130       140       150        160    

      160       170       180       190       200       210        
pF1KB8 EGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLAR
       .: .  :  . .  .   :  ..  .. :..:.    .   .  .. ..  : . . :.:
XP_016 KGYEEIT--FYEYLKTQKLTPNLQYIVMHSIAM---TSETASSTIDGLKATKNFLHCLGR
          170         180       190          200       210         

      220       230       240       250       260         270      
pF1KB8 YGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM--ENGKVVGVKSE-GEVA
       ::..:.:.:::: ::::: : :. :..:: : : . :. ...  :. :  .. .. :.  
XP_016 YGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRI
     220       230       240       250       260       270         

         280           290       300       310       320        330
pF1KB8 RCKQLICDPSYIPD----RVRKAGQVIRIICILSHPIKNTNDANSCQII-IPQNQVNRKS
         .... . ::.:.    :: .  :. : . : .. . .:.. .. .:. .: .. .  .
XP_016 ISEHFLVEDSYFPENMCSRV-QYRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA
     280       290        300       310       320       330        

              340       350       360       370        380         
pF1KB8 DIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQK-FVAISDLYEP
        . :  .  .  .  .: :..  . :   :        : : :: . :: ::  ...   
XP_016 -VRVIELCSSTMTCMKGTYLVHLTCTSSKT--------AREDLESVVQKLFVPYTEMEIE
       340       350       360               370       380         

     390       400       410       420       430       440         
pF1KB8 IDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRKQNDVFGEAEQ  
                                                                   
XP_016 NEQVEKPRILWALYFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQE
     390       400       410       420       430       440         

>>NP_001307888 (OMIM: 300390,303100) rab proteins gerany  (505 aa)
 initn: 362 init1: 203 opt: 399  Z-score: 492.2  bits: 100.4 E(85289): 1.1e-20
Smith-Waterman score: 399; 26.0% identity (59.9% similar) in 327 aa overlap (69-386:76-386)

       40        50        60        70        80        90        
pF1KB8 YGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTR
                                     :: .:.::. :.:.. : :. .:. ..:.:
NP_001 EDMSENVPIAEDTTEQPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSR
          50        60        70        80        90       100     

      100       110       120       130       140       150        
pF1KB8 YLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF
       : .:: .   .... :.. .:: ...... :. . : ::: . :::.:  .. :. :  .
NP_001 YAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEY
         110       120       130       140       150        160    

      160       170       180       190       200       210        
pF1KB8 EGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLAR
       .: .  :  . .  .   :  ..  .. :..:.    .   .  .. ..  : . . :.:
NP_001 KGYEEIT--FYEYLKTQKLTPNLQYIVMHSIAM---TSETASSTIDGLKATKNFLHCLGR
          170         180       190          200       210         

      220       230       240       250       260         270      
pF1KB8 YGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM--ENGKVVGVKSE-GEVA
       ::..:.:.:::: ::::: : :. :..:: : : . :. ...  :. :  .. .. :.  
NP_001 YGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRI
     220       230       240       250       260       270         

         280           290       300       310       320        330
pF1KB8 RCKQLICDPSYIPD----RVRKAGQVIRIICILSHPIKNTNDANSCQII-IPQNQVNRKS
         .... . ::.:.    :: .  :. : . : .. . .:.. .. .:. .: .. .  .
NP_001 ISEHFLVEDSYFPENMCSRV-QYRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA
     280       290        300       310       320       330        

              340       350       360       370        380         
pF1KB8 DIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQK-FVAISDLYEP
        . :  .  .  .  .: :..  . :   :        : : :: . :: ::  ...   
NP_001 -VRVIELCSSTMTCMKGTYLVHLTCTSSKT--------AREDLESVVQKLFVPYTEMEIE
       340       350       360               370       380         

     390       400       410       420       430       440         
pF1KB8 IDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRKQNDVFGEAEQ  
                                                                   
NP_001 NEQVEKPRILWALYFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQE
     390       400       410       420       430       440         

>>XP_016884734 (OMIM: 300390,303100) PREDICTED: rab prot  (505 aa)
 initn: 362 init1: 203 opt: 399  Z-score: 492.2  bits: 100.4 E(85289): 1.1e-20
Smith-Waterman score: 399; 26.0% identity (59.9% similar) in 327 aa overlap (69-386:76-386)

       40        50        60        70        80        90        
pF1KB8 YGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTR
                                     :: .:.::. :.:.. : :. .:. ..:.:
XP_016 EDMSENVPIAEDTTEQPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSR
          50        60        70        80        90       100     

      100       110       120       130       140       150        
pF1KB8 YLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF
       : .:: .   .... :.. .:: ...... :. . : ::: . :::.:  .. :. :  .
XP_016 YAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEY
         110       120       130       140       150        160    

      160       170       180       190       200       210        
pF1KB8 EGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLAR
       .: .  :  . .  .   :  ..  .. :..:.    .   .  .. ..  : . . :.:
XP_016 KGYEEIT--FYEYLKTQKLTPNLQYIVMHSIAM---TSETASSTIDGLKATKNFLHCLGR
          170         180       190          200       210         

      220       230       240       250       260         270      
pF1KB8 YGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM--ENGKVVGVKSE-GEVA
       ::..:.:.:::: ::::: : :. :..:: : : . :. ...  :. :  .. .. :.  
XP_016 YGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRI
     220       230       240       250       260       270         

         280           290       300       310       320        330
pF1KB8 RCKQLICDPSYIPD----RVRKAGQVIRIICILSHPIKNTNDANSCQII-IPQNQVNRKS
         .... . ::.:.    :: .  :. : . : .. . .:.. .. .:. .: .. .  .
XP_016 ISEHFLVEDSYFPENMCSRV-QYRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA
     280       290        300       310       320       330        

              340       350       360       370        380         
pF1KB8 DIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQK-FVAISDLYEP
        . :  .  .  .  .: :..  . :   :        : : :: . :: ::  ...   
XP_016 -VRVIELCSSTMTCMKGTYLVHLTCTSSKT--------AREDLESVVQKLFVPYTEMEIE
       340       350       360               370       380         

     390       400       410       420       430       440         
pF1KB8 IDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRKQNDVFGEAEQ  
                                                                   
XP_016 NEQVEKPRILWALYFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQE
     390       400       410       420       430       440         

>>XP_016884733 (OMIM: 300390,303100) PREDICTED: rab prot  (505 aa)
 initn: 362 init1: 203 opt: 399  Z-score: 492.2  bits: 100.4 E(85289): 1.1e-20
Smith-Waterman score: 399; 26.0% identity (59.9% similar) in 327 aa overlap (69-386:76-386)

       40        50        60        70        80        90        
pF1KB8 YGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTR
                                     :: .:.::. :.:.. : :. .:. ..:.:
XP_016 EDMSENVPIAEDTTEQPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSR
          50        60        70        80        90       100     

      100       110       120       130       140       150        
pF1KB8 YLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF
       : .:: .   .... :.. .:: ...... :. . : ::: . :::.:  .. :. :  .
XP_016 YAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEY
         110       120       130       140       150        160    

      160       170       180       190       200       210        
pF1KB8 EGVDPQTTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLAR
       .: .  :  . .  .   :  ..  .. :..:.    .   .  .. ..  : . . :.:
XP_016 KGYEEIT--FYEYLKTQKLTPNLQYIVMHSIAM---TSETASSTIDGLKATKNFLHCLGR
          170         180       190          200       210         

      220       230       240       250       260         270      
pF1KB8 YGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIM--ENGKVVGVKSE-GEVA
       ::..:.:.:::: ::::: : :. :..:: : : . :. ...  :. :  .. .. :.  
XP_016 YGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRI
     220       230       240       250       260       270         

         280           290       300       310       320        330
pF1KB8 RCKQLICDPSYIPD----RVRKAGQVIRIICILSHPIKNTNDANSCQII-IPQNQVNRKS
         .... . ::.:.    :: .  :. : . : .. . .:.. .. .:. .: .. .  .
XP_016 ISEHFLVEDSYFPENMCSRV-QYRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGTFA
     280       290        300       310       320       330        

              340       350       360       370        380         
pF1KB8 DIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQK-FVAISDLYEP
        . :  .  .  .  .: :..  . :   :        : : :: . :: ::  ...   
XP_016 -VRVIELCSSTMTCMKGTYLVHLTCTSSKT--------AREDLESVVQKLFVPYTEMEIE
       340       350       360               370       380         

     390       400       410       420       430       440         
pF1KB8 IDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRKQNDVFGEAEQ  
                                                                   
XP_016 NEQVEKPRILWALYFNMRDSSDISRSCYNDLPSNVYVCSGPDCGLGNDNAVKQAETLFQE
     390       400       410       420       430       440         




447 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:28:18 2016 done: Fri Nov  4 09:28:19 2016
 Total Scan time:  6.180 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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