Result of FASTA (omim) for
pF1KB7749
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7749, 443 aa
1>>>pF1KB7749 443 - 443 aa - 443 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 15.8255+/-0.000471; mu= -28.3369+/- 0.030
mean_var=766.4970+/-153.670, 0's: 0 Z-trim(126.2): 103 B-trim: 0 in 0/59
Lambda= 0.046325
statistics sampled from 51485 (51624) to 51485 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.84), E-opt: 0.2 (0.605), width: 16
Scan time: 6.890
The best scores are: opt bits E(85289)
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 3151 225.2 2.7e-58
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 3151 225.2 2.7e-58
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 3151 225.2 2.7e-58
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 3151 225.2 2.7e-58
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 3151 225.2 2.7e-58
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 3151 225.2 2.7e-58
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 3151 225.2 2.7e-58
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 959 78.7 3.4e-14
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 959 78.7 3.4e-14
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 959 78.7 3.4e-14
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 959 78.7 3.4e-14
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 959 78.7 3.4e-14
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 959 78.7 3.4e-14
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 956 78.5 3.9e-14
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 883 73.6 1.1e-12
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 883 73.6 1.1e-12
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 883 73.6 1.1e-12
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 883 73.6 1.1e-12
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 883 73.6 1.1e-12
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 883 73.6 1.1e-12
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 883 73.6 1.1e-12
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 883 73.6 1.1e-12
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 854 71.8 5.4e-12
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 854 71.8 5.4e-12
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 854 71.8 5.4e-12
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 854 71.8 5.4e-12
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 854 71.8 5.4e-12
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 854 71.8 5.4e-12
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 854 71.8 5.4e-12
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 854 71.8 5.4e-12
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 746 64.4 5.7e-10
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 746 64.4 5.7e-10
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 710 61.9 2.6e-09
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 710 62.1 3.8e-09
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 463 45.4 0.00024
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 444 44.2 0.00068
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 432 43.2 0.00091
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 403 41.4 0.0042
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 394 40.9 0.0071
>>XP_005249788 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 3151 init1: 3151 opt: 3151 Z-score: 1167.5 bits: 225.2 E(85289): 2.7e-58
Smith-Waterman score: 3151; 100.0% identity (100.0% similar) in 443 aa overlap (1-443:1-443)
10 20 30 40 50 60
pF1KB7 MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT
370 380 390 400 410 420
430 440
pF1KB7 YTDLTGHHPSQGRIQEAPKLTHL
:::::::::::::::::::::::
XP_005 YTDLTGHHPSQGRIQEAPKLTHL
430 440
>>XP_005249789 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 3151 init1: 3151 opt: 3151 Z-score: 1167.5 bits: 225.2 E(85289): 2.7e-58
Smith-Waterman score: 3151; 100.0% identity (100.0% similar) in 443 aa overlap (1-443:1-443)
10 20 30 40 50 60
pF1KB7 MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT
370 380 390 400 410 420
430 440
pF1KB7 YTDLTGHHPSQGRIQEAPKLTHL
:::::::::::::::::::::::
XP_005 YTDLTGHHPSQGRIQEAPKLTHL
430 440
>>XP_005249787 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 3151 init1: 3151 opt: 3151 Z-score: 1167.5 bits: 225.2 E(85289): 2.7e-58
Smith-Waterman score: 3151; 100.0% identity (100.0% similar) in 443 aa overlap (1-443:1-443)
10 20 30 40 50 60
pF1KB7 MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT
370 380 390 400 410 420
430 440
pF1KB7 YTDLTGHHPSQGRIQEAPKLTHL
:::::::::::::::::::::::
XP_005 YTDLTGHHPSQGRIQEAPKLTHL
430 440
>>XP_006715778 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 3151 init1: 3151 opt: 3151 Z-score: 1167.5 bits: 225.2 E(85289): 2.7e-58
Smith-Waterman score: 3151; 100.0% identity (100.0% similar) in 443 aa overlap (1-443:1-443)
10 20 30 40 50 60
pF1KB7 MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT
370 380 390 400 410 420
430 440
pF1KB7 YTDLTGHHPSQGRIQEAPKLTHL
:::::::::::::::::::::::
XP_006 YTDLTGHHPSQGRIQEAPKLTHL
430 440
>>XP_011513645 (OMIM: 142954) PREDICTED: homeobox protei (443 aa)
initn: 3151 init1: 3151 opt: 3151 Z-score: 1167.5 bits: 225.2 E(85289): 2.7e-58
Smith-Waterman score: 3151; 100.0% identity (100.0% similar) in 443 aa overlap (1-443:1-443)
10 20 30 40 50 60
pF1KB7 MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT
370 380 390 400 410 420
430 440
pF1KB7 YTDLTGHHPSQGRIQEAPKLTHL
:::::::::::::::::::::::
XP_011 YTDLTGHHPSQGRIQEAPKLTHL
430 440
>>NP_109377 (OMIM: 142954) homeobox protein Hox-A3 isofo (443 aa)
initn: 3151 init1: 3151 opt: 3151 Z-score: 1167.5 bits: 225.2 E(85289): 2.7e-58
Smith-Waterman score: 3151; 100.0% identity (100.0% similar) in 443 aa overlap (1-443:1-443)
10 20 30 40 50 60
pF1KB7 MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_109 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT
370 380 390 400 410 420
430 440
pF1KB7 YTDLTGHHPSQGRIQEAPKLTHL
:::::::::::::::::::::::
NP_109 YTDLTGHHPSQGRIQEAPKLTHL
430 440
>>NP_705895 (OMIM: 142954) homeobox protein Hox-A3 isofo (443 aa)
initn: 3151 init1: 3151 opt: 3151 Z-score: 1167.5 bits: 225.2 E(85289): 2.7e-58
Smith-Waterman score: 3151; 100.0% identity (100.0% similar) in 443 aa overlap (1-443:1-443)
10 20 30 40 50 60
pF1KB7 MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 MQKATYYDSSAIYGGYPYQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 HPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 PPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 NRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 PQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 QGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHHHGPGPGEPHPT
370 380 390 400 410 420
430 440
pF1KB7 YTDLTGHHPSQGRIQEAPKLTHL
:::::::::::::::::::::::
NP_705 YTDLTGHHPSQGRIQEAPKLTHL
430 440
>>XP_011523022 (OMIM: 142966) PREDICTED: homeobox protei (431 aa)
initn: 831 init1: 605 opt: 959 Z-score: 375.9 bits: 78.7 E(85289): 3.4e-14
Smith-Waterman score: 1415; 50.4% identity (70.6% similar) in 476 aa overlap (1-443:1-431)
10 20 30 40 50
pF1KB7 MQKATYYDSSA--IYGGYP-YQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSS
::::::::..: ..::: : ..:::.... :: : .:: .:.:.: :::::: ..
XP_011 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQP-PFQAATHLEGDYQRSACSLQSLGN
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 AGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPA
:. : :..::. .:.: :.:. : : .:::. ::. :: . . .
XP_011 AAPHAKSKELNGSCMR---------PGLA------PEPLSAPPGSPPPSAAPTSATSNSS
60 70 80 90 100
120 130 140 150 160 170
pF1KB7 APPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGE
::...::. . : :: :..::::::::::::..: :..: ...:
XP_011 NGGGPSKSGPPKCG------------PGTNS-TLTKQIFPWMKESRQTSKLKNNSPGTAE
110 120 130 140 150
180 190 200 210
pF1KB7 SCAG-----------------------DKSPPGQASSKRARTAYTSAQLVELEKEFHFNR
.:.: ::::::.:.::::::::::::::::::::::::
XP_011 GCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNR
160 170 180 190 200 210
220 230 240 250 260 270
pF1KB7 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPP--G
::::::::::::::::.::::::::::::::::::::.::. .:::: ::. :: : .
XP_011 YLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQS
220 230 240 250 260 270
280 290 300 310 320 330
pF1KB7 AGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAA
..:..:..::.. : :: ::: :.: :..:.:: ..: : .:. : ..: .
XP_011 TAGFMNALHSMTPS--YESPSPPAFGKAHQNAYALP-SNYQPPLKGCGAP----QKYPPT
280 290 300 310 320
340 350 360 370 380
pF1KB7 GAGAGGTPDYDPHAHGLQGNG-SYGTPHIQGSPVFVGGS-YVEPMSN-SGPALFGLTHLP
: :.:.::. ::.:: .:::: .:::::.:::. :..:. .::.:.::.::
XP_011 PA-----PEYEPHV--LQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLS
330 340 350 360 370
390 400 410 420 430 440
pF1KB7 HAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGHH--PSQGRIQEAPKLTHL
: :: .::.:: :.. ..:::: :::::::::..:: : :::::::::::::
XP_011 HHPSGNLDYNGAPPMAPSQHHGPC--EPHPTYTDLSSHHAPPPQGRIQEAPKLTHL
380 390 400 410 420 430
>>XP_005257334 (OMIM: 142966) PREDICTED: homeobox protei (431 aa)
initn: 831 init1: 605 opt: 959 Z-score: 375.9 bits: 78.7 E(85289): 3.4e-14
Smith-Waterman score: 1415; 50.4% identity (70.6% similar) in 476 aa overlap (1-443:1-431)
10 20 30 40 50
pF1KB7 MQKATYYDSSA--IYGGYP-YQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSS
::::::::..: ..::: : ..:::.... :: : .:: .:.:.: :::::: ..
XP_005 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQP-PFQAATHLEGDYQRSACSLQSLGN
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 AGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPA
:. : :..::. .:.: :.:. : : .:::. ::. :: . . .
XP_005 AAPHAKSKELNGSCMR---------PGLA------PEPLSAPPGSPPPSAAPTSATSNSS
60 70 80 90 100
120 130 140 150 160 170
pF1KB7 APPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGE
::...::. . : :: :..::::::::::::..: :..: ...:
XP_005 NGGGPSKSGPPKCG------------PGTNS-TLTKQIFPWMKESRQTSKLKNNSPGTAE
110 120 130 140 150
180 190 200 210
pF1KB7 SCAG-----------------------DKSPPGQASSKRARTAYTSAQLVELEKEFHFNR
.:.: ::::::.:.::::::::::::::::::::::::
XP_005 GCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNR
160 170 180 190 200 210
220 230 240 250 260 270
pF1KB7 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPP--G
::::::::::::::::.::::::::::::::::::::.::. .:::: ::. :: : .
XP_005 YLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQS
220 230 240 250 260 270
280 290 300 310 320 330
pF1KB7 AGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAA
..:..:..::.. : :: ::: :.: :..:.:: ..: : .:. : ..: .
XP_005 TAGFMNALHSMTPS--YESPSPPAFGKAHQNAYALP-SNYQPPLKGCGAP----QKYPPT
280 290 300 310 320
340 350 360 370 380
pF1KB7 GAGAGGTPDYDPHAHGLQGNG-SYGTPHIQGSPVFVGGS-YVEPMSN-SGPALFGLTHLP
: :.:.::. ::.:: .:::: .:::::.:::. :..:. .::.:.::.::
XP_005 PA-----PEYEPHV--LQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLS
330 340 350 360 370
390 400 410 420 430 440
pF1KB7 HAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGHH--PSQGRIQEAPKLTHL
: :: .::.:: :.. ..:::: :::::::::..:: : :::::::::::::
XP_005 HHPSGNLDYNGAPPMAPSQHHGPC--EPHPTYTDLSSHHAPPPQGRIQEAPKLTHL
380 390 400 410 420 430
>>NP_002137 (OMIM: 142966) homeobox protein Hox-B3 isofo (431 aa)
initn: 831 init1: 605 opt: 959 Z-score: 375.9 bits: 78.7 E(85289): 3.4e-14
Smith-Waterman score: 1415; 50.4% identity (70.6% similar) in 476 aa overlap (1-443:1-431)
10 20 30 40 50
pF1KB7 MQKATYYDSSA--IYGGYP-YQAANGFAYNANQQPYPASAALGADGEYHRPACSLQSPSS
::::::::..: ..::: : ..:::.... :: : .:: .:.:.: :::::: ..
NP_002 MQKATYYDNAAAALFGGYSSYPGSNGFGFDVPPQP-PFQAATHLEGDYQRSACSLQSLGN
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 AGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPA
:. : :..::. .:.: :.:. : : .:::. ::. :: . . .
NP_002 AAPHAKSKELNGSCMR---------PGLA------PEPLSAPPGSPPPSAAPTSATSNSS
60 70 80 90 100
120 130 140 150 160 170
pF1KB7 APPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGE
::...::. . : :: :..::::::::::::..: :..: ...:
NP_002 NGGGPSKSGPPKCG------------PGTNS-TLTKQIFPWMKESRQTSKLKNNSPGTAE
110 120 130 140 150
180 190 200 210
pF1KB7 SCAG-----------------------DKSPPGQASSKRARTAYTSAQLVELEKEFHFNR
.:.: ::::::.:.::::::::::::::::::::::::
NP_002 GCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNR
160 170 180 190 200 210
220 230 240 250 260 270
pF1KB7 YLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPP--G
::::::::::::::::.::::::::::::::::::::.::. .:::: ::. :: : .
NP_002 YLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQS
220 230 240 250 260 270
280 290 300 310 320 330
pF1KB7 AGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAA
..:..:..::.. : :: ::: :.: :..:.:: ..: : .:. : ..: .
NP_002 TAGFMNALHSMTPS--YESPSPPAFGKAHQNAYALP-SNYQPPLKGCGAP----QKYPPT
280 290 300 310 320
340 350 360 370 380
pF1KB7 GAGAGGTPDYDPHAHGLQGNG-SYGTPHIQGSPVFVGGS-YVEPMSN-SGPALFGLTHLP
: :.:.::. ::.:: .:::: .:::::.:::. :..:. .::.:.::.::
NP_002 PA-----PEYEPHV--LQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLS
330 340 350 360 370
390 400 410 420 430 440
pF1KB7 HAASGAMDYGGAGPLGSGHHHGPGPGEPHPTYTDLTGHH--PSQGRIQEAPKLTHL
: :: .::.:: :.. ..:::: :::::::::..:: : :::::::::::::
NP_002 HHPSGNLDYNGAPPMAPSQHHGPC--EPHPTYTDLSSHHAPPPQGRIQEAPKLTHL
380 390 400 410 420 430
443 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:22:50 2016 done: Fri Nov 4 09:22:51 2016
Total Scan time: 6.890 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]