GENSCAN 1.0	Date run:  4-Nov-116	Time: 09:00:45

Sequence gi568815585r:27863118_28069006 : 205889 bp : 44.31% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  14350  14370   21  0  0   77  101     9 0.087   0.78
 1.02 Intr +  45023  45198  176  1  2   23   81   100 0.007   1.54
 1.03 Term +  45419  45626  208  2  1   56   39   141 0.008   2.81
 1.04 PlyA +  46902  46907    6                               1.05

 2.00 Prom +  56625  56664   40                              -3.66
 2.01 Init +  57022  57427  406  0  1   99  115   462 0.998  46.75
 2.02 Intr +  61139  61468  330  0  0  117   38   547 0.131  48.20
 2.03 Intr +  62796  62925  130  1  1   31   58    97 0.088   0.75
 2.04 Intr +  65908  65965   58  1  1   66  116    21 0.135   1.59
 2.05 Intr +  66990  67008   19  2  1  146   96    12 0.019   3.98
 2.06 Intr +  68895  68922   28  1  1  106   86    -3 0.009  -1.53
 2.07 Term +  82142  82298  157  2  1   79   33   178 0.142   8.81
 2.08 PlyA +  82430  82435    6                               1.05

 3.07 PlyA -  82878  82873    6                               1.05
 3.06 Term -  91192  91059  134  2  2   15   53   174 0.156   4.85
 3.05 Intr -  91504  91367  138  2  0   66   77    95 0.152   6.64
 3.04 Intr -  98283  98154  130  0  1   44   65   137 0.759   7.27
 3.03 Intr - 100252 100088  165  1  0  102   -4    84 0.174   0.76
 3.02 Intr - 101898 101753  146  1  2  134   75   321 0.875  35.40
 3.01 Init - 105889 105349  541  1  1   96  121   881 0.966  87.24
 3.00 Prom - 107104 107065   40                              -7.66

 4.00 Prom + 110075 110114   40                              -9.36
 4.01 Sngl + 112660 113031  372  0  0   82   43   195 0.592   8.66
 4.02 PlyA + 113078 113083    6                               1.05

 5.05 PlyA - 113738 113733    6                               1.05
 5.04 Term - 115335 114989  347  1  2  106   37   732 0.997  64.56
 5.03 Intr - 116182 116088   95  0  2   61   56    28 0.195  -3.49
 5.02 Intr - 117532 117352  181  2  1   92   80    51 0.143   3.63
 5.01 Init - 125520 125346  175  0  1   54  110   162 0.808  14.51
 5.00 Prom - 128424 128385   40                              -5.86

 6.20 PlyA - 129780 129775    6                               1.05
 6.19 Term - 137517 137472   46  2  1  134   44    90 0.750   5.88
 6.18 Intr - 152139 152040  100  1  1   79  101    83 0.950   7.87
 6.17 Intr - 152584 152473  112  1  1   94  111    74 0.998  10.25
 6.16 Intr - 155472 155350  123  0  0   77   54   140 0.969  10.28
 6.15 Intr - 160360 160233  128  2  2   60   76   105 0.971   6.90
 6.14 Intr - 165171 165061  111  1  0   90   91    69 0.990   7.75
 6.13 Intr - 170874 170770  105  1  0  106   87    63 0.982   8.19
 6.12 Intr - 171097 170965  133  1  1   54   91    93 0.986   6.42
 6.11 Intr - 171290 171172  119  0  2  102   93    16 0.620   3.68
 6.10 Intr - 172556 172378  179  1  2  108   87    16 0.906   3.06
 6.09 Intr - 172926 172818  109  1  1   94   29    81 0.958   2.14
 6.08 Intr - 174171 174068  104  2  2   70  100    54 0.943   4.62
 6.07 Intr - 178182 178075  108  2  0  130   36    21 0.569   0.50
 6.06 Intr - 185326 185158  169  2  1  114   94    59 0.984   8.10
 6.05 Intr - 186420 186267  154  0  1   56   63    72 0.321   1.15
 6.04 Intr - 186657 186518  140  1  2   80   75    29 0.223   0.98
 6.03 Intr - 194345 194230  116  1  2  100  100   -31 0.200  -0.61
 6.02 Intr - 194624 194592   33  1  0   82  100    22 0.490   0.14
 6.01 Intr - 198952 198750  203  1  2   82  111    97 0.964   9.48

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  61139  61584  446  0  2  117   54   589 0.865  53.80


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815585r:27863118_28069006|GENSCAN_predicted_peptide_1|134_aa
MQEQLGNHKYPQSNKQTILVNIYKGATVIKFQGVHSSSNQKFTSRDEKYKLGTDWFQVID
GLWKGSWLDPRMRKQRIQRAKLTFSTCDCSDFGVLGEWDGVLEPIPWGYGESAVPLLICW
KRTCFCRAPNDEEL

>gi568815585r:27863118_28069006|GENSCAN_predicted_CDS_1|405_bp
atgcaagaacagttgggtaatcacaaatatccccagtccaataaacaaacgatccttgtg
aatatttacaagggagcaactgttataaagttccagggagtgcacagtagcagcaaccaa
aaattcacaagtagagatgaaaagtacaagctgggcacagactggttccaggtgatagac
ggactgtggaagggaagttggctggatccgaggatgcggaagcagaggatacagagagcc
aagctcacgttttcaacctgcgactgctcggattttggtgttttgggggagtgggacggg
gtcctggaaccaatcccctggggatatggagagtcagccgtacctttgctcatctgttgg
aaaagaacgtgtttctgcagggcaccaaatgacgaagaactataa

>gi568815585r:27863118_28069006|GENSCAN_predicted_peptide_2|375_aa
MNGEEQYYAATQLYKDPCAFQRGPAPEFSASPPACLYMGRQPPPPPPHPFPGALGALEQG
SPPDISPYEVPPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLPFP
WMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELA
VMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPP
PPPPGGCGRNSCSEVEAVLKTSTVAWCALETNNYSRASMTFTSLEIMKTDRPSWSHKPSI
PLGIFNPKVWFVSEEFSMSLISKSMVAYWRQAGLSYIRYSQICAKVVRDALKTEFKANAK
KTSGNSVKIVKVKKE

>gi568815585r:27863118_28069006|GENSCAN_predicted_CDS_2|1128_bp
atgaacggcgaggagcagtactacgcggccacgcagctttacaaggacccatgcgcgttc
cagcgaggcccggcgccggagttcagcgccagcccccctgcgtgcctgtacatgggccgc
cagcccccgccgccgccgccgcacccgttccctggcgccctgggcgcgctggagcagggc
agccccccggacatctccccgtacgaggtgccccccctcgccgacgaccccgcggtggcg
caccttcaccaccacctcccggctcagctcgcgctcccccacccgcccgccgggcccttc
ccggagggagccgagccgggcgtcctggaggagcccaaccgcgtccagctgcctttccca
tggatgaagtctaccaaagctcacgcgtggaaaggccagtgggcaggcggcgcctacgct
gcggagccggaggagaacaagcggacgcgcacggcctacacgcgcgcacagctgctagag
ctggagaaggagttcctattcaacaagtacatctcacggccgcgccgggtggagctggct
gtcatgttgaacttgaccgagagacacatcaagatctggttccaaaaccgccgcatgaag
tggaaaaaggaggaggacaagaagcgcggcggcgggacagctgtcgggggtggcggggtc
gcggagcctgagcaggactgcgccgtgacctccggcgaggagcttctggcgctgccgccg
ccgccgccccccggaggatgtggacgtaattcctgttccgaggtagaggctgtgctgaag
acaagcacagtggcctggtgcgccttggaaaccaacaactattcacgagccagtatgacc
ttcacatctttagaaattatgaaaacagaccgtccgagctggagccacaagccctccatt
cctcttggaatcttcaaccccaaggtgtggtttgtgtctgaggaattctcaatgagcctg
atttccaaaagcatggtggcctactggagacaggctggactcagctacatccgatactcc
cagatctgtgcaaaagtagtgagagatgcactgaagacagaattcaaagcaaatgccaaa
aagacttctggcaacagcgtaaaaattgtgaaagtaaagaaggaataa

>gi568815585r:27863118_28069006|GENSCAN_predicted_peptide_3|417_aa
MYVSYLLDKDVSMYPSSVRHSGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQS
PGPSWPAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHPH
HHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQ
VKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAK
ERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPDPGEGGLALRFDLPTN
IREPNQRAHGGALRAVGEDEQSRETARAGARGLVSRCSRPRRPVSACCRSLLGLRRCPGF
PGEIRGVSREVARDAKLFKRCAQLRRGGAGNLGRKRRSHSVKKAWSTGLRPVVEDLG

>gi568815585r:27863118_28069006|GENSCAN_predicted_CDS_3|1254_bp
atgtacgtgagctacctcctggacaaggacgtgagcatgtaccctagctccgtgcgccac
tctggcggcctcaacctggcgccgcagaacttcgtcagccccccgcagtacccggactac
ggcggttaccacgtggcggccgcagctgcagcggcagcgaacttggacagcgcgcagtcc
ccggggccatcctggccggcagcgtatggcgccccactccgggaggactggaatggctac
gcgcccggaggcgccgcggccgccgccaacgccgtggctcacggcctcaacggtggctcc
ccggccgcagccatgggctacagcagccccgcagactaccatccgcaccaccacccgcat
caccacccgcaccacccggccgccgcgccttcctgcgcttctgggctgctgcaaacgctc
aaccccggccctcctgggcccgccgccaccgctgccgccgagcagctgtctcccggcggc
cagcggcggaacctgtgcgagtggatgcggaagccggcgcagcagtccctcggcagccaa
gtgaaaaccaggacgaaagacaaatatcgagtggtgtacacggaccaccagcggctggag
ctggagaaggagtttcactacagtcgctacatcaccatccggaggaaagccgagctagcc
gccacgctggggctctctgagaggcaggttaaaatctggtttcagaaccgcagagcaaag
gagaggaaaatcaacaagaagaagttgcagcagcaacagcagcagcagccaccacagccg
cctccgccgccaccacagcctccccagcctcagccaggtcctctgagaagtgtcccagag
cccttgagtccggacccgggcgaggggggcttagcccttcgtttcgatcttcccaccaac
atccgagagcctaatcagcgcgcccacggaggcgccttaagggcagttggggaagatgag
cagagccgggaaacagcaagagcgggcgcccgggggctcgtgtcccgctgctctcgccca
agacggccggtctcggcctgctgccggtccttgctgggtctgcgccgctgcccgggattc
cctggagagattcgcggcgtctcccgagaggtggcgcgcgacgccaagcttttcaaaagg
tgcgcgcaactacggcgcggaggtgcggggaacctgggccgcaagcgccgaagccactcg
gtgaagaaggcctggagcactggccttcgacccgtcgtcgaagacctgggctga

>gi568815585r:27863118_28069006|GENSCAN_predicted_peptide_4|123_aa
MIAAQARVHAAGAPLPPRAHQRPESGKRLCQAKADRNREHVAICRRELPCQAATGDLPAR
ATASAQSSSRRGESEPPAGLVGALPSPASTPRVLRSPLRLLMLRCFGRGAAQPALCPFSS
SSF

>gi568815585r:27863118_28069006|GENSCAN_predicted_CDS_4|372_bp
atgattgccgcgcaagctagggtccacgcggccggggctcctctcccgcctcgggcgcac
cagaggccagaaagcggaaagcggctctgccaggccaaggccgacagaaaccgagagcat
gtcgctatttgccggagagaactgccctgccaggctgccacaggtgacttgcccgcgcga
gccacggcctctgcgcagagctcctcccgaaggggagagtcagagccacccgcgggtttg
gtcggggctcttcccagcccggcgtccacgccccgcgtcctgcgctcgcccttgcggctg
cttatgctcaggtgtttcggaagaggcgccgcgcagccagctctctgtcccttcagctcc
agctccttctaa

>gi568815585r:27863118_28069006|GENSCAN_predicted_peptide_5|265_aa
MDIEKVNSMDLGEFVDVFGNATERCPLIAAAVWSQRPFSDLEDLEKHFFAFIDALAQSAW
ADPPDSMQRWGGKSPDWAGDLAAALKLRTPEEEARKVQPPKTRTFPSSAARAGYRPGPGP
RRLCKDFLQVNAVLWGLWDLQSEKGNKSRAGQEGILRCHPDLAGSELQRGTLTAESQREQ
SGAGLRSLGADERLRLAELNAQYRARFGFPFVLAARFSDRTAVPRELARRLLCPSAQELR
TALGEVKKIGSLRLADLLRADPAKL

>gi568815585r:27863118_28069006|GENSCAN_predicted_CDS_5|798_bp
atggacattgagaaggtcaactccatggaccttggagaattcgtggatgtgtttgggaat
gccactgagagatgtcctctgattgcagctgctgtttggtcccagcggccattctctgat
ttggaagatttagagaagcacttttttgcctttattgatgcccttgcacagtcagcttgg
gctgatcctccagacagcatgcaacggtggggagggaagtcccctgactgggcgggggac
ctagcggctgctctgaaactccgaacacctgaagaggaggcgcggaaggtccagccgccc
aagactcgcactttcccctcctccgcagcccgggcaggttaccgtcctgggcctgggcct
aggagattatgcaaagatttccttcaagtaaacgctgttctctggggcctctgggatcta
cagtcggagaaggggaataagtcccgggccggccaggagggcatcctgcgctgccacccg
gacctggcgggcagcgagctgcagcggggcacgctcacggccgagtcgcagcgggaacag
agcggcgcaggcctgaggagcctgggcgcggacgagcggctgcggctggccgagctcaac
gcgcagtaccgcgcgcgcttcggtttccccttcgtgctcgccgcgcgcttcagcgaccgg
acggcggtgccgcgcgagctggcgcgccggctgctctgcccgtccgcgcaggagctgcgc
actgctctgggcgaggtgaagaagatcggcagcctgcgcctggccgacctcctccgcgca
gaccccgccaagctgtag

>gi568815585r:27863118_28069006|GENSCAN_predicted_peptide_6|763_aa
VSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQ
PHFDLQNRWEFSILEAQRRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNLN
QTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMI
RILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFS
VRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYRVFGHCPERITLSLLEAHVFLLLGHFHAS
LFHTAFLSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQASCFS
DGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKC
CAYNSLGTSCETILLNSPGPFPFIQDNISFYATIGVCLLFIVVLTLLICHKYKKVKAKQF
RYESQLQMVQVTGSSDNEYFYVDFREYEYDLKWEFPRENLEFGKVLGSGAFGKVMNATAY
GISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSDEIEYE
NQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICD
FGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPY
PGIPVDANFYKLIQNGFKMDQPFYATEEMSSPVSEPMSDGFLH

>gi568815585r:27863118_28069006|GENSCAN_predicted_CDS_6|2292_bp
gtatcagaatccccggaagacctcgggtgtgcgttgagaccccagagctcagggacagtg
tacgaagctgccgctgtggaagtggatgtatctgcttccatcacactgcaagtgctggtc
gacgccccagggaacatttcctgtctctgggtctttaagcacagctccctgaattgccag
ccacattttgatttacaaaacagatgggagttttcgatcctagaagctcagagaagagga
gttgtttccatggtcattttgaaaatgacagaaacccaagctggagaatacctacttttt
attcagagtgaagctaccaattacacaatattgtttacagtgagtataagaaatctaaat
caaactcctcagaccacattgccacaattatttcttaaagtaggggaacccttatggata
aggtgcaaagctgttcatgtgaaccatggattcgggctcacctgggaattagaaaacaaa
gcactcgaggagggcaactactttgagatgagtacctattcaacaaacagaactatgata
cggattctgtttgcttttgtatcatcagtggcaagaaacgacaccggatactacacttgt
tcctcttcaaagcatcccagtcaatcagctttggttaccatcgtagaaaagggatttata
aatgctaccaattcaagtgaagattatgaaattgaccaatatgaagagttttgtttttct
gtcaggtttaaagcctacccacaaatcagatgtacgtggaccttctctcgaaaatcattt
ccttgtgagcaaaagggtcttgataacggatacagggtctttggccattgtccagagaga
attacactttctctcttagaagctcacgtctttcttctcttgggccacttccacgccagc
ctcttccacactgccttcctgagcatatccaagttttgcaatcataagcaccagccagga
gaatatatattccatgcagaaaatgatgatgcccaatttaccaaaatgttcacgctgaat
ataagaaggaaacctcaagtgctcgcagaagcatcggcaagtcaggcgtcctgtttctcg
gatggatacccattaccatcttggacctggaagaagtgttcagacaagtctcccaactgc
acagaagagatcacagaaggagtctggaatagaaaggctaacagaaaagtgtttggacag
tgggtgtcgagcagtactctaaacatgagtgaagccataaaagggttcctggtcaagtgc
tgtgcatacaattcccttggcacatcttgtgagacgatccttttaaactctccaggcccc
ttccctttcatccaagacaacatctcattctatgcaacaattggtgtttgtctcctcttc
attgtcgttttaaccctgctaatttgtcacaagtacaaaaaggtaaaagcaaagcaattt
aggtatgaaagccagctacagatggtacaggtgaccggctcctcagataatgagtacttc
tacgttgatttcagagaatatgaatatgatctcaaatgggagtttccaagagaaaattta
gagtttgggaaggtactaggatcaggtgcttttggaaaagtgatgaacgcaacagcttat
ggaattagcaaaacaggagtctcaatccaggttgccgtcaaaatgctgaaagaaaaagca
gacagctctgaaagagaggcactcatgtcagaactcaagatgatgacccagctgggaagc
cacgagaatattgtgaacctgctgggggcgtgcacactgtcagatgaaattgaatatgaa
aaccaaaaaaggctggaagaagaggaggacttgaatgtgcttacatttgaagatcttctt
tgctttgcatatcaagttgccaaaggaatggaatttctggaatttaagtcgtgtgttcac
agagacctggccgccaggaacgtgcttgtcacccacgggaaagtggtgaagatatgtgac
tttggattggctcgagatatcatgagtgattccaactatgttgtcaggggcaatgcccgt
ctgcctgtaaaatggatggcccccgaaagcctgtttgaaggcatctacaccattaagagt
gatgtctggtcatatggaatattactgtgggaaatcttctcacttggtgtgaatccttac
cctggcattccggttgatgctaacttctacaaactgattcaaaatggatttaaaatggat
cagccattttatgctacagaagaaatgtcttcgccagtttccgagcccatgagtgacggc
ttcctgcactga