Result of FASTA (omim) for pF1KB7539
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7539, 177 aa
  1>>>pF1KB7539 177 - 177 aa - 177 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1977+/-0.000394; mu= 11.6347+/- 0.025
 mean_var=200.8231+/-41.733, 0's: 0 Z-trim(119.1): 38  B-trim: 0 in 0/53
 Lambda= 0.090504
 statistics sampled from 32749 (32789) to 32749 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.384), width:  16
 Scan time:  5.510

The best scores are:                                      opt bits E(85289)
NP_003409 (OMIM: 116955,602668) cellular nucleic a ( 177) 1347 187.3 1.1e-47
NP_001120665 (OMIM: 116955,602668) cellular nuclei ( 178) 1335 185.8 3.3e-47
NP_001120664 (OMIM: 116955,602668) cellular nuclei ( 179) 1333 185.5 3.9e-47
NP_001120668 (OMIM: 116955,602668) cellular nuclei ( 170) 1274 177.8 7.9e-45
NP_001120667 (OMIM: 116955,602668) cellular nuclei ( 171) 1262 176.2 2.4e-44
NP_001120666 (OMIM: 116955,602668) cellular nuclei ( 172) 1260 175.9 2.8e-44


>>NP_003409 (OMIM: 116955,602668) cellular nucleic acid-  (177 aa)
 initn: 1347 init1: 1347 opt: 1347  Z-score: 977.1  bits: 187.3 E(85289): 1.1e-47
Smith-Waterman score: 1347; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:1-177)

               10        20        30        40        50        60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
               70        80        90       100       110       120

              130       140       150       160       170       
pF1KB7 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
              130       140       150       160       170       

>>NP_001120665 (OMIM: 116955,602668) cellular nucleic ac  (178 aa)
 initn: 987 init1: 812 opt: 1335  Z-score: 968.6  bits: 185.8 E(85289): 3.3e-47
Smith-Waterman score: 1335; 99.4% identity (99.4% similar) in 178 aa overlap (1-177:1-178)

               10        20        30        40        50        60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
               10        20        30        40        50        60

               70         80        90       100       110         
pF1KB7 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
               70        80        90       100       110       120

     120       130       140       150       160       170       
pF1KB7 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
              130       140       150       160       170        

>>NP_001120664 (OMIM: 116955,602668) cellular nucleic ac  (179 aa)
 initn: 808 init1: 808 opt: 1333  Z-score: 967.2  bits: 185.5 E(85289): 3.9e-47
Smith-Waterman score: 1333; 98.9% identity (98.9% similar) in 179 aa overlap (1-177:1-179)

               10        20        30        40        50        60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
               10        20        30        40        50        60

               70          80        90       100       110        
pF1KB7 GHLAKDCDLQED--ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
       ::::::::::::  ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
               70        80        90       100       110       120

      120       130       140       150       160       170       
pF1KB7 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
              130       140       150       160       170         

>>NP_001120668 (OMIM: 116955,602668) cellular nucleic ac  (170 aa)
 initn: 1065 init1: 1065 opt: 1274  Z-score: 925.8  bits: 177.8 E(85289): 7.9e-45
Smith-Waterman score: 1274; 96.0% identity (96.0% similar) in 177 aa overlap (1-177:1-170)

               10        20        30        40        50        60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
       :::::::::::::::::::::::::::::::::::       ::::::::::::::::::
NP_001 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRG-------FQFVSSSLPDICYRCGES
               10        20        30               40        50   

               70        80        90       100       110       120
pF1KB7 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY
            60        70        80        90       100       110   

              130       140       150       160       170       
pF1KB7 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
           120       130       140       150       160       170

>>NP_001120667 (OMIM: 116955,602668) cellular nucleic ac  (171 aa)
 initn: 1070 init1: 812 opt: 1262  Z-score: 917.3  bits: 176.2 E(85289): 2.4e-44
Smith-Waterman score: 1262; 95.5% identity (95.5% similar) in 178 aa overlap (1-177:1-171)

               10        20        30        40        50        60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
       :::::::::::::::::::::::::::::::::::       ::::::::::::::::::
NP_001 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRG-------FQFVSSSLPDICYRCGES
               10        20        30               40        50   

               70         80        90       100       110         
pF1KB7 GHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC
            60        70        80        90       100       110   

     120       130       140       150       160       170       
pF1KB7 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
           120       130       140       150       160       170 

>>NP_001120666 (OMIM: 116955,602668) cellular nucleic ac  (172 aa)
 initn: 1066 init1: 808 opt: 1260  Z-score: 915.9  bits: 175.9 E(85289): 2.8e-44
Smith-Waterman score: 1260; 95.0% identity (95.0% similar) in 179 aa overlap (1-177:1-172)

               10        20        30        40        50        60
pF1KB7 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES
       :::::::::::::::::::::::::::::::::::       ::::::::::::::::::
NP_001 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRG-------FQFVSSSLPDICYRCGES
               10        20        30               40        50   

               70          80        90       100       110        
pF1KB7 GHLAKDCDLQED--ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
       ::::::::::::  ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK
            60        70        80        90       100       110   

      120       130       140       150       160       170       
pF1KB7 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
           120       130       140       150       160       170  




177 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:32:42 2016 done: Fri Nov  4 08:32:42 2016
 Total Scan time:  5.510 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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