Result of FASTA (omim) for pF1KB7449
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7449, 188 aa
  1>>>pF1KB7449 188 - 188 aa - 188 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7291+/-0.000302; mu= 13.1923+/- 0.019
 mean_var=103.7399+/-20.863, 0's: 0 Z-trim(119.9): 28  B-trim: 0 in 0/55
 Lambda= 0.125922
 statistics sampled from 34521 (34549) to 34521 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.405), width:  16
 Scan time:  6.110

The best scores are:                                      opt bits E(85289)
NP_005626 (OMIM: 300813,312820) protein SSX1 [Homo ( 188) 1019 194.5 8.4e-50
NP_001265620 (OMIM: 300813,312820) protein SSX1 [H ( 188) 1019 194.5 8.4e-50
NP_783629 (OMIM: 300192,300813) protein SSX2 isofo ( 188) 1015 193.8 1.4e-49
NP_775494 (OMIM: 300542) protein SSX7 [Homo sapien ( 188) 1005 192.0 4.9e-49
NP_066294 (OMIM: 300325) protein SSX3 [Homo sapien ( 188)  985 188.3 6.1e-48
NP_005627 (OMIM: 300326) protein SSX4 isoform a [H ( 188)  967 185.1 5.9e-47
XP_016885248 (OMIM: 300326) PREDICTED: protein SSX ( 188)  967 185.1 5.9e-47
NP_783729 (OMIM: 300327) protein SSX5 isoform b [H ( 188)  961 184.0 1.2e-46
XP_011542251 (OMIM: 300327) PREDICTED: protein SSX ( 188)  961 184.0 1.2e-46
XP_016885247 (OMIM: 300327) PREDICTED: protein SSX ( 188)  961 184.0 1.2e-46
NP_066295 (OMIM: 300327) protein SSX5 isoform a [H ( 229)  878 169.0   5e-42
NP_001265626 (OMIM: 300192,300813) protein SSX2 is ( 214)  806 155.9 4.1e-38
NP_003138 (OMIM: 300192,300813) protein SSX2 isofo ( 223)  806 155.9 4.2e-38
XP_016884919 (OMIM: 300542) PREDICTED: protein SSX ( 223)  789 152.8 3.6e-37
XP_011542187 (OMIM: 300325) PREDICTED: protein SSX ( 170)  771 149.4 2.8e-36
NP_783856 (OMIM: 300326) protein SSX4 isoform b [H ( 153)  529 105.4 4.5e-23
XP_016884920 (OMIM: 300542) PREDICTED: protein SSX ( 129)  526 104.8 5.8e-23
NP_001297143 (OMIM: 609760) histone-lysine N-methy ( 894)  190 44.5 0.00056
NP_064612 (OMIM: 609760) histone-lysine N-methyltr ( 894)  190 44.5 0.00056
XP_011521131 (OMIM: 609759) PREDICTED: probable hi ( 377)  172 40.9  0.0029
XP_005256331 (OMIM: 609759) PREDICTED: probable hi ( 492)  172 41.0  0.0035
NP_001091643 (OMIM: 609759) probable histone-lysin ( 492)  172 41.0  0.0035
XP_011521133 (OMIM: 609759) PREDICTED: probable hi ( 172)  160 38.4  0.0074


>>NP_005626 (OMIM: 300813,312820) protein SSX1 [Homo sap  (188 aa)
 initn: 1051 init1: 1019 opt: 1019  Z-score: 1015.1  bits: 194.5 E(85289): 8.4e-50
Smith-Waterman score: 1019; 81.4% identity (92.6% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       :::::.::::::::::::::::::::::: ::::.::.:::.::::: :.:::.:.::::
NP_005 MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::.:::  :: ::.::: : :: :::.::  .::.::::::::.::::::::.::::. 
NP_005 LGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       .::::: ::::::::::.: :::::. ::::..:::::::::::::::::::::::::::
NP_005 NDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::::::.
NP_005 SDPEEDDE
               

>>NP_001265620 (OMIM: 300813,312820) protein SSX1 [Homo   (188 aa)
 initn: 1051 init1: 1019 opt: 1019  Z-score: 1015.1  bits: 194.5 E(85289): 8.4e-50
Smith-Waterman score: 1019; 81.4% identity (92.6% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       :::::.::::::::::::::::::::::: ::::.::.:::.::::: :.:::.:.::::
NP_001 MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::.:::  :: ::.::: : :: :::.::  .::.::::::::.::::::::.::::. 
NP_001 LGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       .::::: ::::::::::.: :::::. ::::..:::::::::::::::::::::::::::
NP_001 NDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::::::.
NP_001 SDPEEDDE
               

>>NP_783629 (OMIM: 300192,300813) protein SSX2 isoform b  (188 aa)
 initn: 1084 init1: 1015 opt: 1015  Z-score: 1011.2  bits: 193.8 E(85289): 1.4e-49
Smith-Waterman score: 1015; 80.9% identity (88.8% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       ::::::::.::   :.  :: .::::::::::::::::::: ::::  :.::::::::::
NP_783 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::..::  :: :::: : : :: ::: ::::.:::::::::::: : :::::.::::::
NP_783 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       .::. ::::::::::::.:::::: ..:::::::::::::.:::::::::::::::::::
NP_783 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::::::.
NP_783 SDPEEDDE
               

>>NP_775494 (OMIM: 300542) protein SSX7 [Homo sapiens]    (188 aa)
 initn: 1037 init1: 1005 opt: 1005  Z-score: 1001.4  bits: 192.0 E(85289): 4.9e-49
Smith-Waterman score: 1005; 79.8% identity (89.9% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       ::::::::.:::  :.  :: .:.::::::::::.::::::  :::: :.::::::::::
NP_775 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::..::  ::.:  ::: : :: :::::.::.:::::::: :::::.:::::.::::::
NP_775 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       .:::::::::: :::::.:::::: :.::::.. ::::::::::::::::::::::::::
NP_775 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::::::.
NP_775 SDPEEDDE
               

>>NP_066294 (OMIM: 300325) protein SSX3 [Homo sapiens]    (188 aa)
 initn: 985 init1: 985 opt: 985  Z-score: 981.7  bits: 188.3 E(85289): 6.1e-48
Smith-Waterman score: 985; 78.2% identity (88.3% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       :::::.::.::   :.  :: .::::::::::::::::::: ::::  :.::::::::::
NP_066 MNGDDTFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::.. :  ::::::.:: : :: ::: ::::.:.:::::::::: :.:::::.::::::
NP_066 LGFKAILPSFMRNKRVTDFQGNDFDNDPNRGNQVQRPQMTFGRLQGIFPKIMPKKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       . :: ::::::::::::.:::::: ..::::.  ::::::.:::::::::::::::::::
NP_066 NVSKEVPEASGPQNDGKQLCPPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::::::.
NP_066 SDPEEDDE
               

>>NP_005627 (OMIM: 300326) protein SSX4 isoform a [Homo   (188 aa)
 initn: 1002 init1: 967 opt: 967  Z-score: 964.0  bits: 185.1 E(85289): 5.9e-47
Smith-Waterman score: 967; 76.6% identity (88.3% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       ::::::::.::::::. :::  ::::::::::::.:::::: ::::  :.:: .::.:::
NP_005 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::.:::  :::.:::.: . ::  ::::. :.::::::::: ::::.:::::.::::: 
NP_005 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       .  : ::::::::::::.:::::. :. :::.. :::::::::::::::::::::.::::
NP_005 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::::::.
NP_005 SDPEEDDE
               

>>XP_016885248 (OMIM: 300326) PREDICTED: protein SSX4 is  (188 aa)
 initn: 1002 init1: 967 opt: 967  Z-score: 964.0  bits: 185.1 E(85289): 5.9e-47
Smith-Waterman score: 967; 76.6% identity (88.3% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       ::::::::.::::::. :::  ::::::::::::.:::::: ::::  :.:: .::.:::
XP_016 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::.:::  :::.:::.: . ::  ::::. :.::::::::: ::::.:::::.::::: 
XP_016 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       .  : ::::::::::::.:::::. :. :::.. :::::::::::::::::::::.::::
XP_016 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::::::.
XP_016 SDPEEDDE
               

>>NP_783729 (OMIM: 300327) protein SSX5 isoform b [Homo   (188 aa)
 initn: 1020 init1: 961 opt: 961  Z-score: 958.2  bits: 184.0 E(85289): 1.2e-46
Smith-Waterman score: 961; 75.5% identity (89.4% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       :::::::..:::  ..  :: .:::::::::::..:::::: ::::  :.::::::::::
NP_783 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::..::  ::::::..: : :: ::: ::::.::.::::::::: :.::: ::::::::
NP_783 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       .:::::::::::::.::.: : :: ..:::... :::::::::::::.::::::::::::
NP_783 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::.:::.
NP_783 SDPQEDDE
               

>>XP_011542251 (OMIM: 300327) PREDICTED: protein SSX5 is  (188 aa)
 initn: 1020 init1: 961 opt: 961  Z-score: 958.2  bits: 184.0 E(85289): 1.2e-46
Smith-Waterman score: 961; 75.5% identity (89.4% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       :::::::..:::  ..  :: .:::::::::::..:::::: ::::  :.::::::::::
XP_011 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::..::  ::::::..: : :: ::: ::::.::.::::::::: :.::: ::::::::
XP_011 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       .:::::::::::::.::.: : :: ..:::... :::::::::::::.::::::::::::
XP_011 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::.:::.
XP_011 SDPQEDDE
               

>>XP_016885247 (OMIM: 300327) PREDICTED: protein SSX5 is  (188 aa)
 initn: 1020 init1: 961 opt: 961  Z-score: 958.2  bits: 184.0 E(85289): 1.2e-46
Smith-Waterman score: 961; 75.5% identity (89.4% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       :::::::..:::  ..  :: .:::::::::::..:::::: ::::  :.::::::::::
XP_016 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::..::  ::::::..: : :: ::: ::::.::.::::::::: :.::: ::::::::
XP_016 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       .:::::::::::::.::.: : :: ..:::... :::::::::::::.::::::::::::
XP_016 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::.:::.
XP_016 SDPQEDDE
               




188 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:56:09 2016 done: Fri Nov  4 07:56:10 2016
 Total Scan time:  6.110 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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