Result of FASTA (ccds) for pF1KB7449
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7449, 188 aa
  1>>>pF1KB7449 188 - 188 aa - 188 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9934+/-0.000737; mu= 12.0107+/- 0.045
 mean_var=111.9124+/-22.542, 0's: 0 Z-trim(112.8): 24  B-trim: 65 in 1/52
 Lambda= 0.121237
 statistics sampled from 13487 (13509) to 13487 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.415), width:  16
 Scan time:  2.090

The best scores are:                                      opt bits E(32554)
CCDS14290.1 SSX1 gene_id:6756|Hs108|chrX           ( 188) 1019 187.9 3.2e-48
CCDS14344.2 SSX2 gene_id:6757|Hs108|chrX           ( 188) 1015 187.2 5.3e-48
CCDS48129.1 SSX2B gene_id:727837|Hs108|chrX        ( 188) 1015 187.2 5.3e-48
CCDS14343.1 SSX7 gene_id:280658|Hs108|chrX         ( 188) 1005 185.4 1.8e-47
CCDS14291.1 SSX3 gene_id:10214|Hs108|chrX          ( 188)  985 181.9   2e-46
CCDS35240.1 SSX4 gene_id:6759|Hs108|chrX           ( 188)  967 178.8 1.8e-45
CCDS35241.1 SSX4B gene_id:548313|Hs108|chrX        ( 188)  967 178.8 1.8e-45
CCDS14289.1 SSX5 gene_id:6758|Hs108|chrX           ( 188)  961 177.7 3.7e-45
CCDS14288.1 SSX5 gene_id:6758|Hs108|chrX           ( 229)  878 163.3   1e-40
CCDS65267.1 SSX2B gene_id:727837|Hs108|chrX        ( 223)  806 150.7   6e-37
CCDS14345.2 SSX2 gene_id:6757|Hs108|chrX           ( 223)  806 150.7   6e-37
CCDS43935.1 SSX4B gene_id:548313|Hs108|chrX        ( 153)  529 102.1 1.8e-22
CCDS43934.1 SSX4 gene_id:6759|Hs108|chrX           ( 153)  529 102.1 1.8e-22


>>CCDS14290.1 SSX1 gene_id:6756|Hs108|chrX                (188 aa)
 initn: 1051 init1: 1019 opt: 1019  Z-score: 979.1  bits: 187.9 E(32554): 3.2e-48
Smith-Waterman score: 1019; 81.4% identity (92.6% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       :::::.::::::::::::::::::::::: ::::.::.:::.::::: :.:::.:.::::
CCDS14 MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::.:::  :: ::.::: : :: :::.::  .::.::::::::.::::::::.::::. 
CCDS14 LGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       .::::: ::::::::::.: :::::. ::::..:::::::::::::::::::::::::::
CCDS14 NDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::::::.
CCDS14 SDPEEDDE
               

>>CCDS14344.2 SSX2 gene_id:6757|Hs108|chrX                (188 aa)
 initn: 1084 init1: 1015 opt: 1015  Z-score: 975.3  bits: 187.2 E(32554): 5.3e-48
Smith-Waterman score: 1015; 80.9% identity (88.8% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       ::::::::.::   :.  :: .::::::::::::::::::: ::::  :.::::::::::
CCDS14 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::..::  :: :::: : : :: ::: ::::.:::::::::::: : :::::.::::::
CCDS14 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       .::. ::::::::::::.:::::: ..:::::::::::::.:::::::::::::::::::
CCDS14 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::::::.
CCDS14 SDPEEDDE
               

>>CCDS48129.1 SSX2B gene_id:727837|Hs108|chrX             (188 aa)
 initn: 1084 init1: 1015 opt: 1015  Z-score: 975.3  bits: 187.2 E(32554): 5.3e-48
Smith-Waterman score: 1015; 80.9% identity (88.8% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       ::::::::.::   :.  :: .::::::::::::::::::: ::::  :.::::::::::
CCDS48 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::..::  :: :::: : : :: ::: ::::.:::::::::::: : :::::.::::::
CCDS48 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       .::. ::::::::::::.:::::: ..:::::::::::::.:::::::::::::::::::
CCDS48 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::::::.
CCDS48 SDPEEDDE
               

>>CCDS14343.1 SSX7 gene_id:280658|Hs108|chrX              (188 aa)
 initn: 1037 init1: 1005 opt: 1005  Z-score: 965.8  bits: 185.4 E(32554): 1.8e-47
Smith-Waterman score: 1005; 79.8% identity (89.9% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       ::::::::.:::  :.  :: .:.::::::::::.::::::  :::: :.::::::::::
CCDS14 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::..::  ::.:  ::: : :: :::::.::.:::::::: :::::.:::::.::::::
CCDS14 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       .:::::::::: :::::.:::::: :.::::.. ::::::::::::::::::::::::::
CCDS14 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::::::.
CCDS14 SDPEEDDE
               

>>CCDS14291.1 SSX3 gene_id:10214|Hs108|chrX               (188 aa)
 initn: 985 init1: 985 opt: 985  Z-score: 946.9  bits: 181.9 E(32554): 2e-46
Smith-Waterman score: 985; 78.2% identity (88.3% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       :::::.::.::   :.  :: .::::::::::::::::::: ::::  :.::::::::::
CCDS14 MNGDDTFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::.. :  ::::::.:: : :: ::: ::::.:.:::::::::: :.:::::.::::::
CCDS14 LGFKAILPSFMRNKRVTDFQGNDFDNDPNRGNQVQRPQMTFGRLQGIFPKIMPKKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       . :: ::::::::::::.:::::: ..::::.  ::::::.:::::::::::::::::::
CCDS14 NVSKEVPEASGPQNDGKQLCPPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::::::.
CCDS14 SDPEEDDE
               

>>CCDS35240.1 SSX4 gene_id:6759|Hs108|chrX                (188 aa)
 initn: 1002 init1: 967 opt: 967  Z-score: 929.9  bits: 178.8 E(32554): 1.8e-45
Smith-Waterman score: 967; 76.6% identity (88.3% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       ::::::::.::::::. :::  ::::::::::::.:::::: ::::  :.:: .::.:::
CCDS35 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::.:::  :::.:::.: . ::  ::::. :.::::::::: ::::.:::::.::::: 
CCDS35 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       .  : ::::::::::::.:::::. :. :::.. :::::::::::::::::::::.::::
CCDS35 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::::::.
CCDS35 SDPEEDDE
               

>>CCDS35241.1 SSX4B gene_id:548313|Hs108|chrX             (188 aa)
 initn: 1002 init1: 967 opt: 967  Z-score: 929.9  bits: 178.8 E(32554): 1.8e-45
Smith-Waterman score: 967; 76.6% identity (88.3% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       ::::::::.::::::. :::  ::::::::::::.:::::: ::::  :.:: .::.:::
CCDS35 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::.:::  :::.:::.: . ::  ::::. :.::::::::: ::::.:::::.::::: 
CCDS35 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       .  : ::::::::::::.:::::. :. :::.. :::::::::::::::::::::.::::
CCDS35 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::::::.
CCDS35 SDPEEDDE
               

>>CCDS14289.1 SSX5 gene_id:6758|Hs108|chrX                (188 aa)
 initn: 1020 init1: 961 opt: 961  Z-score: 924.3  bits: 177.7 E(32554): 3.7e-45
Smith-Waterman score: 961; 75.5% identity (89.4% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       :::::::..:::  ..  :: .:::::::::::..:::::: ::::  :.::::::::::
CCDS14 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::..::  ::::::..: : :: ::: ::::.::.::::::::: :.::: ::::::::
CCDS14 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       .:::::::::::::.::.: : :: ..:::... :::::::::::::.::::::::::::
CCDS14 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDK
       :::.:::.
CCDS14 SDPQEDDE
               

>>CCDS14288.1 SSX5 gene_id:6758|Hs108|chrX                (229 aa)
 initn: 947 init1: 871 opt: 878  Z-score: 844.7  bits: 163.3 E(32554): 1e-40
Smith-Waterman score: 878; 72.1% identity (88.5% similar) in 183 aa overlap (9-188:47-229)

                                     10           20        30     
pF1KB7                       MNGDDAFAKRPRDDAKA---SEKRSKAFDDIAKYFSKE
                                     ..: .. ::   .. ...::::::::::..
CCDS14 IPEKMQKHPWRQVCDRGIHLVNLSPFWKVGREPASSIKALLCGRGEARAFDDIAKYFSEK
         20        30        40        50        60        70      

          40        50        60        70        80        90     
pF1KB7 EWEKMKFSEKISCVHMKRKYEAMTKLGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVE
       :::::: ::::  :.:::::::::::::..::  ::::::..: : :: ::: ::::.::
CCDS14 EWEKMKASEKIIYVYMKRKYEAMTKLGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVE
         80        90       100       110       120       130      

         100       110       120       130       140       150     
pF1KB7 RPQMTFGRLQRIIPKIMPEKPAEEGSDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERS
       .::::::::: :.::: ::::::::.:::::::::::::.::.: : :: ..:::... :
CCDS14 HPQMTFGRLQGIFPKITPEKPAEEGNDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTS
        140       150       160       170       180       190      

         160       170       180        
pF1KB7 GPKRGKHAWTHRLRERKQLVIYEEISDPEEDDK
       ::::::::::::.:::::::::::::::.:::.
CCDS14 GPKRGKHAWTHRVRERKQLVIYEEISDPQEDDE
        200       210       220         

>>CCDS65267.1 SSX2B gene_id:727837|Hs108|chrX             (223 aa)
 initn: 858 init1: 804 opt: 806  Z-score: 776.8  bits: 150.7 E(32554): 6e-37
Smith-Waterman score: 806; 73.7% identity (85.0% similar) in 167 aa overlap (1-167:1-167)

               10        20        30        40        50        60
pF1KB7 MNGDDAFAKRPRDDAKASEKRSKAFDDIAKYFSKEEWEKMKFSEKISCVHMKRKYEAMTK
       ::::::::.::   :.  :: .::::::::::::::::::: ::::  :.::::::::::
CCDS65 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFNVTLSLFMRNKRATDSQRNDSDNDRNRGNEVERPQMTFGRLQRIIPKIMPEKPAEEG
       :::..::  :: :::: : : :: ::: ::::.:::::::::::: : :::::.::::::
CCDS65 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SDSKGVPEASGPQNDGKKLCPPGKASSSEKIHERSGPKRGKHAWTHRLRERKQLVIYEEI
       .::. ::::::::::::.:::::: ..::::::::: .....   .:             
CCDS65 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHN
              130       140       150       160       170       180

                                                  
pF1KB7 SDPEEDDK                                   
                                                  
CCDS65 IGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGPTDCVRENSW
              190       200       210       220   




188 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:56:09 2016 done: Fri Nov  4 07:56:09 2016
 Total Scan time:  2.090 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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