Result of FASTA (ccds) for pF1KB7443
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7443, 292 aa
  1>>>pF1KB7443 292 - 292 aa - 292 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2342+/-0.000856; mu= 6.7772+/- 0.052
 mean_var=107.2370+/-21.463, 0's: 0 Z-trim(109.6): 19  B-trim: 0 in 0/52
 Lambda= 0.123852
 statistics sampled from 10980 (10991) to 10980 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.338), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS54090.1 SHISA6 gene_id:388336|Hs108|chr17      ( 500) 1934 355.9 3.5e-98
CCDS45615.1 SHISA6 gene_id:388336|Hs108|chr17      ( 551) 1556 288.4 8.3e-78
CCDS54089.1 SHISA6 gene_id:388336|Hs108|chr17      ( 532) 1554 288.0   1e-77


>>CCDS54090.1 SHISA6 gene_id:388336|Hs108|chr17           (500 aa)
 initn: 1934 init1: 1934 opt: 1934  Z-score: 1876.1  bits: 355.9 E(32554): 3.5e-98
Smith-Waterman score: 1934; 100.0% identity (100.0% similar) in 292 aa overlap (1-292:209-500)

                                             10        20        30
pF1KB7                               MNIHRALADILRQQGPIPIAHCERETISAI
                                     ::::::::::::::::::::::::::::::
CCDS54 YITCGVIAFVIVAGVFAKVSYDKAHRPPREMNIHRALADILRQQGPIPIAHCERETISAI
      180       190       200       210       220       230        

               40        50        60        70        80        90
pF1KB7 DTSPKENTPVRSSSKNHYTPVRTAKQTPEKPRMNNILTSATEPYDLSFSRSFQNLAHLPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DTSPKENTPVRSSSKNHYTPVRTAKQTPEKPRMNNILTSATEPYDLSFSRSFQNLAHLPP
      240       250       260       270       280       290        

              100       110       120       130       140       150
pF1KB7 SYESAVKTNPSKYSSLKRLTDKEADEYYMRRRHLPDLAARGTLPLNVIQMSQQKPLPRER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SYESAVKTNPSKYSSLKRLTDKEADEYYMRRRHLPDLAARGTLPLNVIQMSQQKPLPRER
      300       310       320       330       340       350        

              160       170       180       190       200       210
pF1KB7 PRRPIRAMSQDRVLSPDRGLPDEFSMPYDRILSDEQLLSTERLHSQDPLLSPERTAFPEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PRRPIRAMSQDRVLSPDRGLPDEFSMPYDRILSDEQLLSTERLHSQDPLLSPERTAFPEQ
      360       370       380       390       400       410        

              220       230       240       250       260       270
pF1KB7 SLSRAISHTDVFVSTPVLDRYRMSKMHSHPSASNNSYATLGQSQTAAKRHAFASRRHNTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SLSRAISHTDVFVSTPVLDRYRMSKMHSHPSASNNSYATLGQSQTAAKRHAFASRRHNTV
      420       430       440       450       460       470        

              280       290  
pF1KB7 EQLHYIPGHHTCYTASKTEVTV
       ::::::::::::::::::::::
CCDS54 EQLHYIPGHHTCYTASKTEVTV
      480       490       500

>>CCDS45615.1 SHISA6 gene_id:388336|Hs108|chr17           (551 aa)
 initn: 1920 init1: 1549 opt: 1556  Z-score: 1510.4  bits: 288.4 E(32554): 8.3e-78
Smith-Waterman score: 1694; 84.3% identity (84.3% similar) in 324 aa overlap (20-292:228-551)

                          10        20        30        40         
pF1KB7            MNIHRALADILRQQGPIPIAHCERETISAIDTSPKENTPVRSSSKNHYT
                                     ::::::::::::::::::::::::::::::
CCDS45 SYDKAHRPPREMNIHRALADILRQQGPIPIAHCERETISAIDTSPKENTPVRSSSKNHYT
       200       210       220       230       240       250       

      50                                                           
pF1KB7 PVRTAKQTP---------------------------------------------------
       :::::::::                                                   
CCDS45 PVRTAKQTPGHYGKDAYRSGGPDLHNFISSGFVTLGRGHTKGDHQYNHPILSSVTQIPPH
       260       270       280       290       300       310       

       60        70        80        90       100       110        
pF1KB7 EKPRMNNILTSATEPYDLSFSRSFQNLAHLPPSYESAVKTNPSKYSSLKRLTDKEADEYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EKPRMNNILTSATEPYDLSFSRSFQNLAHLPPSYESAVKTNPSKYSSLKRLTDKEADEYY
       320       330       340       350       360       370       

      120       130       140       150       160       170        
pF1KB7 MRRRHLPDLAARGTLPLNVIQMSQQKPLPRERPRRPIRAMSQDRVLSPDRGLPDEFSMPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MRRRHLPDLAARGTLPLNVIQMSQQKPLPRERPRRPIRAMSQDRVLSPDRGLPDEFSMPY
       380       390       400       410       420       430       

      180       190       200       210       220       230        
pF1KB7 DRILSDEQLLSTERLHSQDPLLSPERTAFPEQSLSRAISHTDVFVSTPVLDRYRMSKMHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DRILSDEQLLSTERLHSQDPLLSPERTAFPEQSLSRAISHTDVFVSTPVLDRYRMSKMHS
       440       450       460       470       480       490       

      240       250       260       270       280       290  
pF1KB7 HPSASNNSYATLGQSQTAAKRHAFASRRHNTVEQLHYIPGHHTCYTASKTEVTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 HPSASNNSYATLGQSQTAAKRHAFASRRHNTVEQLHYIPGHHTCYTASKTEVTV
       500       510       520       530       540       550 

>>CCDS54089.1 SHISA6 gene_id:388336|Hs108|chr17           (532 aa)
 initn: 1554 init1: 1554 opt: 1554  Z-score: 1508.7  bits: 288.0 E(32554): 1e-77
Smith-Waterman score: 1860; 90.1% identity (90.1% similar) in 324 aa overlap (1-292:209-532)

                                             10        20        30
pF1KB7                               MNIHRALADILRQQGPIPIAHCERETISAI
                                     ::::::::::::::::::::::::::::::
CCDS54 YITCGVIAFVIVAGVFAKVSYDKAHRPPREMNIHRALADILRQQGPIPIAHCERETISAI
      180       190       200       210       220       230        

               40        50                                        
pF1KB7 DTSPKENTPVRSSSKNHYTPVRTAKQTP--------------------------------
       ::::::::::::::::::::::::::::                                
CCDS54 DTSPKENTPVRSSSKNHYTPVRTAKQTPGHYGKDAYRSGGPDLHNFISSGFVTLGRGHTK
      240       250       260       270       280       290        

       60        70        80        90       100       110        
pF1KB7 EKPRMNNILTSATEPYDLSFSRSFQNLAHLPPSYESAVKTNPSKYSSLKRLTDKEADEYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EKPRMNNILTSATEPYDLSFSRSFQNLAHLPPSYESAVKTNPSKYSSLKRLTDKEADEYY
      300       310       320       330       340       350        

      120       130       140       150       160       170        
pF1KB7 MRRRHLPDLAARGTLPLNVIQMSQQKPLPRERPRRPIRAMSQDRVLSPDRGLPDEFSMPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MRRRHLPDLAARGTLPLNVIQMSQQKPLPRERPRRPIRAMSQDRVLSPDRGLPDEFSMPY
      360       370       380       390       400       410        

      180       190       200       210       220       230        
pF1KB7 DRILSDEQLLSTERLHSQDPLLSPERTAFPEQSLSRAISHTDVFVSTPVLDRYRMSKMHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DRILSDEQLLSTERLHSQDPLLSPERTAFPEQSLSRAISHTDVFVSTPVLDRYRMSKMHS
      420       430       440       450       460       470        

      240       250       260       270       280       290  
pF1KB7 HPSASNNSYATLGQSQTAAKRHAFASRRHNTVEQLHYIPGHHTCYTASKTEVTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HPSASNNSYATLGQSQTAAKRHAFASRRHNTVEQLHYIPGHHTCYTASKTEVTV
      480       490       500       510       520       530  




292 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:52:00 2016 done: Fri Nov  4 07:52:00 2016
 Total Scan time:  2.610 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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