Result of FASTA (omim) for
pF1KB7434
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7434, 188 aa
1>>>pF1KB7434 188 - 188 aa - 188 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4392+/-0.000291; mu= 14.8817+/- 0.018
mean_var=105.4929+/-21.542, 0's: 0 Z-trim(120.6): 29 B-trim: 2247 in 2/56
Lambda= 0.124871
statistics sampled from 36066 (36099) to 36066 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.423), width: 16
Scan time: 5.960
The best scores are: opt bits E(85289)
NP_005627 (OMIM: 300326) protein SSX4 isoform a [H ( 188) 1288 241.4 6.4e-64
XP_016885248 (OMIM: 300326) PREDICTED: protein SSX ( 188) 1288 241.4 6.4e-64
NP_775494 (OMIM: 300542) protein SSX7 [Homo sapien ( 188) 1048 198.2 6.7e-51
NP_066294 (OMIM: 300325) protein SSX3 [Homo sapien ( 188) 1036 196.0 3e-50
NP_783629 (OMIM: 300192,300813) protein SSX2 isofo ( 188) 1024 193.8 1.3e-49
NP_001265620 (OMIM: 300813,312820) protein SSX1 [H ( 188) 1010 191.3 7.7e-49
NP_005626 (OMIM: 300813,312820) protein SSX1 [Homo ( 188) 1010 191.3 7.7e-49
XP_011542251 (OMIM: 300327) PREDICTED: protein SSX ( 188) 1004 190.2 1.6e-48
NP_783729 (OMIM: 300327) protein SSX5 isoform b [H ( 188) 1004 190.2 1.6e-48
XP_016885247 (OMIM: 300327) PREDICTED: protein SSX ( 188) 1004 190.2 1.6e-48
NP_066295 (OMIM: 300327) protein SSX5 isoform a [H ( 229) 896 170.9 1.3e-42
XP_016884919 (OMIM: 300542) PREDICTED: protein SSX ( 223) 828 158.6 6.4e-39
XP_011542187 (OMIM: 300325) PREDICTED: protein SSX ( 170) 818 156.7 1.9e-38
NP_001265626 (OMIM: 300192,300813) protein SSX2 is ( 214) 811 155.5 5.2e-38
NP_003138 (OMIM: 300192,300813) protein SSX2 isofo ( 223) 811 155.6 5.3e-38
NP_783856 (OMIM: 300326) protein SSX4 isoform b [H ( 153) 747 143.8 1.2e-34
XP_016884920 (OMIM: 300542) PREDICTED: protein SSX ( 129) 575 112.8 2.3e-25
NP_001297143 (OMIM: 609760) histone-lysine N-methy ( 894) 239 53.1 1.4e-06
NP_064612 (OMIM: 609760) histone-lysine N-methyltr ( 894) 239 53.1 1.4e-06
XP_011521131 (OMIM: 609759) PREDICTED: probable hi ( 377) 232 51.5 1.9e-06
XP_005256331 (OMIM: 609759) PREDICTED: probable hi ( 492) 232 51.6 2.3e-06
NP_001091643 (OMIM: 609759) probable histone-lysin ( 492) 232 51.6 2.3e-06
XP_011521133 (OMIM: 609759) PREDICTED: probable hi ( 172) 187 43.0 0.00031
>>NP_005627 (OMIM: 300326) protein SSX4 isoform a [Homo (188 aa)
initn: 1288 init1: 1288 opt: 1288 Z-score: 1268.5 bits: 241.4 E(85289): 6.4e-64
Smith-Waterman score: 1288; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
NP_005 SDPEEDDE
>>XP_016885248 (OMIM: 300326) PREDICTED: protein SSX4 is (188 aa)
initn: 1288 init1: 1288 opt: 1288 Z-score: 1268.5 bits: 241.4 E(85289): 6.4e-64
Smith-Waterman score: 1288; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
XP_016 SDPEEDDE
>>NP_775494 (OMIM: 300542) protein SSX7 [Homo sapiens] (188 aa)
initn: 1048 init1: 1048 opt: 1048 Z-score: 1034.8 bits: 198.2 E(85289): 6.7e-51
Smith-Waterman score: 1048; 82.4% identity (90.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
:::::::::::: ::: ::..:.:::::::::::::::::: ::: ::::: .::.:::
NP_775 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::.::::::.. :.:..:::: ::::. :::::::::: ::::::::::::::::
NP_775 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
: : :::::: :::::.:::::.::: :::::::::::::::::::::::::::.::::
NP_775 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
NP_775 SDPEEDDE
>>NP_066294 (OMIM: 300325) protein SSX3 [Homo sapiens] (188 aa)
initn: 1036 init1: 1036 opt: 1036 Z-score: 1023.2 bits: 196.0 E(85289): 3e-50
Smith-Waterman score: 1036; 80.9% identity (89.9% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
:::::.::::: ::: ::..::::::::::::.:::::: :::::::::: .::.:::
NP_066 MNGDDTFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::. :: :::.::..::.:::: :: :. :::.::::::: :: :::::::::::::
NP_066 LGFKAILPSFMRNKRVTDFQGNDFDNDPNRGNQVQRPQMTFGRLQGIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
: ::::::::::::::::::::.:.: :::: ::::::.::::::::::::::.::::
NP_066 NVSKEVPEASGPQNDGKQLCPPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
NP_066 SDPEEDDE
>>NP_783629 (OMIM: 300192,300813) protein SSX2 isoform b (188 aa)
initn: 1024 init1: 1024 opt: 1024 Z-score: 1011.5 bits: 193.8 E(85289): 1.3e-49
Smith-Waterman score: 1024; 79.8% identity (89.9% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
::::::::::: ::: ::..::::::::::::.::::::.:::: ::::: .::.:::
NP_783 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::.:::::: .::: ::.:::. :: :. ::::::::::: :: : :::::::::::
NP_783 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
: .:::::::::::::.:::::.:.: :::.. ::::::.::::::::::::::.::::
NP_783 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
NP_783 SDPEEDDE
>>NP_001265620 (OMIM: 300813,312820) protein SSX1 [Homo (188 aa)
initn: 1010 init1: 1010 opt: 1010 Z-score: 997.8 bits: 191.3 E(85289): 7.7e-49
Smith-Waterman score: 1010; 79.3% identity (89.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
:::::.::.::::::. ::: ::::::: :::::::.::: :::: ::::: ::..:::
NP_001 MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::::::::: .:.:.::.:::: ::.:.: :::.:::::: :.::.::::::::::.:
NP_001 LGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
: : : :::::::::::: :::. . ::::: :::::::::::::::::::::.::::
NP_001 NDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
NP_001 SDPEEDDE
>>NP_005626 (OMIM: 300813,312820) protein SSX1 [Homo sap (188 aa)
initn: 1010 init1: 1010 opt: 1010 Z-score: 997.8 bits: 191.3 E(85289): 7.7e-49
Smith-Waterman score: 1010; 79.3% identity (89.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
:::::.::.::::::. ::: ::::::: :::::::.::: :::: ::::: ::..:::
NP_005 MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::::::::: .:.:.::.:::: ::.:.: :::.:::::: :.::.::::::::::.:
NP_005 LGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
: : : :::::::::::: :::. . ::::: :::::::::::::::::::::.::::
NP_005 NDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
NP_005 SDPEEDDE
>>XP_011542251 (OMIM: 300327) PREDICTED: protein SSX5 is (188 aa)
initn: 1004 init1: 1004 opt: 1004 Z-score: 992.0 bits: 190.2 E(85289): 1.6e-48
Smith-Waterman score: 1004; 78.2% identity (90.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
:::::::.:::: .:: ::..:::::::::::.:::::::.::::.::::: .::.:::
XP_011 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::.:::::::.::.:::.:::: :: :. ::::.:::::: :: ::::: :.:::::
XP_011 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
: : :::::::::.:::: : :. .: ::.::::::::::::::::.:::::::.::::
XP_011 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
:::.::::
XP_011 SDPQEDDE
>>NP_783729 (OMIM: 300327) protein SSX5 isoform b [Homo (188 aa)
initn: 1004 init1: 1004 opt: 1004 Z-score: 992.0 bits: 190.2 E(85289): 1.6e-48
Smith-Waterman score: 1004; 78.2% identity (90.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
:::::::.:::: .:: ::..:::::::::::.:::::::.::::.::::: .::.:::
NP_783 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::.:::::::.::.:::.:::: :: :. ::::.:::::: :: ::::: :.:::::
NP_783 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
: : :::::::::.:::: : :. .: ::.::::::::::::::::.:::::::.::::
NP_783 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
:::.::::
NP_783 SDPQEDDE
>>XP_016885247 (OMIM: 300327) PREDICTED: protein SSX5 is (188 aa)
initn: 1004 init1: 1004 opt: 1004 Z-score: 992.0 bits: 190.2 E(85289): 1.6e-48
Smith-Waterman score: 1004; 78.2% identity (90.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
:::::::.:::: .:: ::..:::::::::::.:::::::.::::.::::: .::.:::
XP_016 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
::::.:::::::.::.:::.:::: :: :. ::::.:::::: :: ::::: :.:::::
XP_016 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
: : :::::::::.:::: : :. .: ::.::::::::::::::::.:::::::.::::
XP_016 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
:::.::::
XP_016 SDPQEDDE
188 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 07:46:02 2016 done: Fri Nov 4 07:46:03 2016
Total Scan time: 5.960 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]