Result of FASTA (omim) for pF1KB7409
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7409, 190 aa
  1>>>pF1KB7409 190 - 190 aa - 190 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7723+/-0.000258; mu= 4.6250+/- 0.016
 mean_var=173.8479+/-34.432, 0's: 0 Z-trim(126.0): 7  B-trim: 36 in 1/61
 Lambda= 0.097272
 statistics sampled from 51036 (51044) to 51036 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.864), E-opt: 0.2 (0.598), width:  16
 Scan time:  6.630

The best scores are:                                      opt bits E(85289)
NP_061835 (OMIM: 609892) protein ripply3 isoform 1 ( 190) 1383 204.4 8.9e-53
NP_001304706 (OMIM: 609892) protein ripply3 isofor ( 106)  736 113.4 1.2e-25
NP_001304697 (OMIM: 609892) protein ripply3 isofor ( 106)  736 113.4 1.2e-25
NP_001009994 (OMIM: 609891,616566) protein ripply2 ( 128)  224 41.6 0.00061
NP_612391 (OMIM: 300575) protein ripply1 isoform 1 ( 151)  219 41.0  0.0011


>>NP_061835 (OMIM: 609892) protein ripply3 isoform 1 [Ho  (190 aa)
 initn: 1383 init1: 1383 opt: 1383  Z-score: 1068.5  bits: 204.4 E(85289): 8.9e-53
Smith-Waterman score: 1383; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)

               10        20        30        40        50        60
pF1KB7 MEPEAAAGARKARGRGCHCPGDAPWRPPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MEPEAAAGARKARGRGCHCPGDAPWRPPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDDESTESA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 RADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDDESTESA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGPLPQGVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGPLPQGVS
              130       140       150       160       170       180

              190
pF1KB7 SRGGKCSSSK
       ::::::::::
NP_061 SRGGKCSSSK
              190

>>NP_001304706 (OMIM: 609892) protein ripply3 isoform 2   (106 aa)
 initn: 736 init1: 736 opt: 736  Z-score: 581.2  bits: 113.4 E(85289): 1.2e-25
Smith-Waterman score: 736; 100.0% identity (100.0% similar) in 106 aa overlap (85-190:1-106)

           60        70        80        90       100       110    
pF1KB7 GRPLEPRADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDD
                                     ::::::::::::::::::::::::::::::
NP_001                               MSKRQEYLRSSGEQVLASFPVQATIDFYDD
                                             10        20        30

          120       130       140       150       160       170    
pF1KB7 ESTESASEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESTESASEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGP
               40        50        60        70        80        90

          180       190
pF1KB7 LPQGVSSRGGKCSSSK
       ::::::::::::::::
NP_001 LPQGVSSRGGKCSSSK
              100      

>>NP_001304697 (OMIM: 609892) protein ripply3 isoform 2   (106 aa)
 initn: 736 init1: 736 opt: 736  Z-score: 581.2  bits: 113.4 E(85289): 1.2e-25
Smith-Waterman score: 736; 100.0% identity (100.0% similar) in 106 aa overlap (85-190:1-106)

           60        70        80        90       100       110    
pF1KB7 GRPLEPRADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDD
                                     ::::::::::::::::::::::::::::::
NP_001                               MSKRQEYLRSSGEQVLASFPVQATIDFYDD
                                             10        20        30

          120       130       140       150       160       170    
pF1KB7 ESTESASEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESTESASEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGP
               40        50        60        70        80        90

          180       190
pF1KB7 LPQGVSSRGGKCSSSK
       ::::::::::::::::
NP_001 LPQGVSSRGGKCSSSK
              100      

>>NP_001009994 (OMIM: 609891,616566) protein ripply2 [Ho  (128 aa)
 initn: 199 init1: 152 opt: 224  Z-score: 191.8  bits: 41.6 E(85289): 0.00061
Smith-Waterman score: 224; 34.7% identity (59.7% similar) in 124 aa overlap (4-122:2-122)

               10        20         30          40        50       
pF1KB7 MEPEAAAGARKARGRGCHCPG-DAPWRPPPPRGPESPAP--WRPWIQTPGDAELTRTGRP
          : :.::. ... .  : . :.: :     : .:     ::::... :  :    .. 
NP_001   MENAGGAEGTESGAAACAATDGPTRRA---GADSGYAGFWRPWVDAGGKKEEETPNHA
                 10        20           30        40        50     

          60        70        80        90       100       110     
pF1KB7 LE--PRADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDDE
        :  : .   : .:   . :.::::.. : ::  .:: . .: .: .::.::::.::.: 
NP_001 AEAMPDGPGMTAASGKLYQFRHPVRLFWPKSKCYDYLYQEAEALLKNFPIQATISFYEDS
          60        70        80        90       100       110     

         120       130       140       150       160       170     
pF1KB7 STESASEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGPL
       ..:.  :                                                     
NP_001 DSEDEIEDLTCEN                                               
         120                                                       

>>NP_612391 (OMIM: 300575) protein ripply1 isoform 1 [Ho  (151 aa)
 initn: 261 init1: 176 opt: 219  Z-score: 187.0  bits: 41.0 E(85289): 0.0011
Smith-Waterman score: 219; 39.8% identity (64.5% similar) in 93 aa overlap (39-128:57-147)

       10        20        30        40        50        60        
pF1KB7 ARKARGRGCHCPGDAPWRPPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEPRADQHTFG
                                     ::::... .:.   :  : :   :   . .
NP_612 APLALPGLLSPSCLLSSGQEVNGSERGTCLWRPWLSSTNDS--PRQMRKLVDLAAGGATA
         30        40        50        60          70        80    

          70        80        90       100       110       120     
pF1KB7 ---SKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDDESTESASEAEE
          .:.   :.::::.. : :.  .:: :.:: .: .:::::::..:.: ..:   : ::
NP_612 AEVTKAESKFHHPVRLFWPKSRSFDYLYSAGEILLQNFPVQATINLYEDSDSEEEEEDEE
           90       100       110       120       130       140    

         130       140       150       160       170       180     
pF1KB7 PEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGPLPQGVSSRGGK
        :.                                                         
NP_612 QEDEEEK                                                     
          150                                                      




190 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:31:50 2016 done: Fri Nov  4 07:31:51 2016
 Total Scan time:  6.630 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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