Result of FASTA (ccds) for pF1KB7407
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7407, 213 aa
  1>>>pF1KB7407 213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2220+/-0.000506; mu= 15.0564+/- 0.031
 mean_var=70.6367+/-14.052, 0's: 0 Z-trim(115.4): 16  B-trim: 0 in 0/55
 Lambda= 0.152602
 statistics sampled from 15980 (15996) to 15980 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.491), width:  16
 Scan time:  2.020

The best scores are:                                      opt bits E(32554)
CCDS12061.1 EFNA2 gene_id:1943|Hs108|chr19         ( 213) 1527 344.0   4e-95
CCDS4097.1 EFNA5 gene_id:1946|Hs108|chr5           ( 228)  676 156.7 1.1e-38
CCDS1090.1 EFNA3 gene_id:1944|Hs108|chr1           ( 238)  561 131.4 4.6e-31
CCDS1091.1 EFNA1 gene_id:1942|Hs108|chr1           ( 205)  457 108.4 3.2e-24
CCDS1092.1 EFNA1 gene_id:1942|Hs108|chr1           ( 183)  438 104.2 5.3e-23
CCDS1089.1 EFNA4 gene_id:1945|Hs108|chr1           ( 201)  396 95.0 3.5e-20
CCDS41407.1 EFNA4 gene_id:1945|Hs108|chr1          ( 193)  389 93.5 9.8e-20
CCDS44237.1 EFNA4 gene_id:1945|Hs108|chr1          ( 207)  384 92.4 2.2e-19


>>CCDS12061.1 EFNA2 gene_id:1943|Hs108|chr19              (213 aa)
 initn: 1527 init1: 1527 opt: 1527  Z-score: 1821.2  bits: 344.0 E(32554): 4e-95
Smith-Waterman score: 1527; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KB7 MAPAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAPAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPTNETLYEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPTNETLYEA
              130       140       150       160       170       180

              190       200       210   
pF1KB7 PEPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS
       :::::::::::::::::::::::::::::::::
CCDS12 PEPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS
              190       200       210   

>>CCDS4097.1 EFNA5 gene_id:1946|Hs108|chr5                (228 aa)
 initn: 671 init1: 475 opt: 676  Z-score: 808.2  bits: 156.7 E(32554): 1.1e-38
Smith-Waterman score: 676; 58.1% identity (78.4% similar) in 167 aa overlap (11-177:7-165)

               10        20        30        40        50        60
pF1KB7 MAPAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYT
                 : :..: :    :.. . ...: .:::::::: :::::. :       : 
CCDS40     MLHVEMLTLVFLVLWMCVFSQ-DPGSKAVADRYAVYWNSSNPRFQRG------DYH
                   10        20         30        40               

               70        80        90       100       110       120
pF1KB7 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAP
       ..: ::::::..::::   .:  .. :.::::::: .:...::: ..:::::::::: .:
CCDS40 IDVCINDYLDVFCPHYEDSVPE-DKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSP
      50        60        70         80        90       100        

              130       140       150       160       170       180
pF1KB7 GGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPTNETLYEA
       .::::::::::::::::::::::::.::.:::.. :.   : ::.:::.:::::  .   
CCDS40 NGPLKFSEKFQLFTPFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFVRPTNSCMKTI
      110       120       130       140       150       160        

              190       200       210                              
pF1KB7 PEPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS                           
                                                                   
CCDS40 GVHDRVFDVNDKVENSLEPADDTVHESAEPSRGENAAQTPRIPSRLLAILLFLLAMLLTL
      170       180       190       200       210       220        

>>CCDS1090.1 EFNA3 gene_id:1944|Hs108|chr1                (238 aa)
 initn: 593 init1: 266 opt: 561  Z-score: 671.1  bits: 131.4 E(32554): 4.6e-31
Smith-Waterman score: 561; 53.4% identity (71.3% similar) in 174 aa overlap (4-170:2-165)

               10        20        30        40        50        60
pF1KB7 MAPAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYT
          :  ::: :::::.:.:  :.  :.  . : ..:.::::: :: ...        :::
CCDS10   MAAAPLL-LLLLLVPVPLLPLL-AQGPGGALGNRHAVYWNSSNQHLRRE------GYT
                  10        20         30        40              50

               70               80        90       100       110   
pF1KB7 VEVSINDYLDIYCPHY-------GAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWE
       :.:..:::::::::::       ::   :.   :.::::::. .:. .:.  : ::::::
CCDS10 VQVNVNDYLDIYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNASQ-GFKRWE
               60        70        80        90       100          

           120       130       140       150       160       170   
pF1KB7 CNRPAAPGGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPT
       :::: :: .:.::::::: .. ::::.::. :::::::: :: . .   :::.::.:   
CCDS10 CNRPHAPHSPIKFSEKFQRYSAFSLGYEFHAGHEYYYIS-TPTHNLHWKCLRMKVFVCCA
     110       120       130       140        150       160        

           180       190       200       210                       
pF1KB7 NETLYEAPEPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS                    
                                                                   
CCDS10 STSHSGEKPVPTLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGI
      170       180       190       200       210       220        

>>CCDS1091.1 EFNA1 gene_id:1942|Hs108|chr1                (205 aa)
 initn: 470 init1: 362 opt: 457  Z-score: 548.3  bits: 108.4 E(32554): 3.2e-24
Smith-Waterman score: 462; 42.7% identity (62.0% similar) in 192 aa overlap (32-211:16-195)

              10        20        30        40        50        60 
pF1KB7 APAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYTV
                                     : .::..:.:: :::.:.   ..:   ::.
CCDS10                MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFR---NED---YTI
                              10        20        30               

              70        80        90       100       110       120 
pF1KB7 EVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPG
       .:..:::.:: ::::         ::.:.::.:. : .  :. ...   ::.::::.:  
CCDS10 HVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKH
      40        50        60        70        80        90         

             130       140       150       160       170           
pF1KB7 GPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVR----------
       :: :.::::: ::::.:: ::. :: :::::    .  :: :::::: :           
CCDS10 GPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDR-CLRLKVTVSGKITHSPQAH
     100       110       120       130        140       150        

               180       190       200       210           
pF1KB7 --PTNETLYEAPEPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS        
         : .. :  : .:     .: .  .. :::    :. ::.:          
CCDS10 DNPQEKRL-AADDPEVRVLHSIGHSAAPRLF----PLAWTVLLLPLLLLQTP
      160        170       180           190       200     

>>CCDS1092.1 EFNA1 gene_id:1942|Hs108|chr1                (183 aa)
 initn: 435 init1: 369 opt: 438  Z-score: 526.4  bits: 104.2 E(32554): 5.3e-23
Smith-Waterman score: 445; 42.2% identity (62.8% similar) in 180 aa overlap (32-211:16-173)

              10        20        30        40        50        60 
pF1KB7 APAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYTV
                                     : .::..:.:: :::.:.   ..:   ::.
CCDS10                MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFR---NED---YTI
                              10        20        30               

              70        80        90       100       110       120 
pF1KB7 EVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPG
       .:..:::.:: ::::         ::.:.::.:. : .  :. ...   ::.::::.:  
CCDS10 HVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKH
      40        50        60        70        80        90         

             130       140       150       160       170       180 
pF1KB7 GPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPTNETLYEAP
       :: :.::::: ::::.:: ::. :: ::::: .: .: : :           .:    : 
CCDS10 GPEKLSEKFQRFTPFTLGKEFKEGHSYYYISHSP-QAHDNP-----------QEKRLAAD
     100       110       120       130                   140       

             190       200       210           
pF1KB7 EPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS        
       .:     .: .  .. :::    :. ::.:          
CCDS10 DPEVRVLHSIGHSAAPRLF----PLAWTVLLLPLLLLQTP
       150       160           170       180   

>>CCDS1089.1 EFNA4 gene_id:1945|Hs108|chr1                (201 aa)
 initn: 286 init1: 172 opt: 396  Z-score: 475.8  bits: 95.0 E(32554): 3.5e-20
Smith-Waterman score: 445; 44.9% identity (65.8% similar) in 187 aa overlap (33-210:24-198)

             10        20        30        40        50        60  
pF1KB7 PAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYTVE
                                     .: :..:::: ::::.  :   :.   .::
CCDS10        MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRG---DA---VVE
                      10        20        30        40             

             70        80        90       100        110       120 
pF1KB7 VSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHR-QRGFKRWECNRPAAPG
       ...:::::: :::: .: :: :  : ..::::.  :. ::. .  :..::: :. :    
CCDS10 LGLNDYLDIVCPHYEGPGPP-EGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPF---
        50        60         70        80        90       100      

             130       140       150       160       170       180 
pF1KB7 GPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPTNETLYEAP
       : ..::::.: :::::::::: ::. :::::.  :..  . ::::.: :   .:   :. 
CCDS10 GHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQ-CLRLQVSVC-CKERKSESA
           110       120       130       140        150        160 

             190               200       210   
pF1KB7 EPIFTSNNSCSSP--GG------CRLFLSTIPVLWTLLGS
       .:. . ..: .:   ::      : :.:  . .:  :   
CCDS10 HPVGSPGESGTSGWRGGDTPSPLCLLLLLLLLILRLLRIL
             170       180       190       200 

>>CCDS41407.1 EFNA4 gene_id:1945|Hs108|chr1               (193 aa)
 initn: 458 init1: 172 opt: 389  Z-score: 467.8  bits: 93.5 E(32554): 9.8e-20
Smith-Waterman score: 438; 45.7% identity (67.1% similar) in 164 aa overlap (33-195:24-176)

             10        20        30        40        50        60  
pF1KB7 PAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYTVE
                                     .: :..:::: ::::.  : .      .::
CCDS41        MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDA------VVE
                      10        20        30        40             

             70        80        90       100        110       120 
pF1KB7 VSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHR-QRGFKRWECNRPAAPG
       ...:::::: :::: .: :: :  : ..::::.  :. ::. .  :..::: :. :    
CCDS41 LGLNDYLDIVCPHYEGPGPP-EGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPF---
        50        60         70        80        90       100      

             130       140       150       160       170       180 
pF1KB7 GPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPTNETLYEAP
       : ..::::.: :::::::::: ::. :::::.  :..  . ::::.: :   ...:   :
CCDS41 GHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQ-CLRLQVSVCCKERNLPSHP
           110       120       130       140        150       160  

             190       200       210   
pF1KB7 EPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS
       .   .:..     :                  
CCDS41 KEPESSQDPLEEEGSLLPALGVPIQTDKMEH 
            170       180       190    

>>CCDS44237.1 EFNA4 gene_id:1945|Hs108|chr1               (207 aa)
 initn: 403 init1: 157 opt: 384  Z-score: 461.4  bits: 92.4 E(32554): 2.2e-19
Smith-Waterman score: 433; 51.1% identity (71.2% similar) in 139 aa overlap (33-170:24-151)

             10        20        30        40        50        60  
pF1KB7 PAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYTVE
                                     .: :..:::: ::::.  : .      .::
CCDS44        MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDA------VVE
                      10        20        30        40             

             70        80        90       100        110       120 
pF1KB7 VSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHR-QRGFKRWECNRPAAPG
       ...:::::: :::: .: :: :  : ..::::.  :. ::. .  :..::: :. :    
CCDS44 LGLNDYLDIVCPHYEGPGPP-EGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPF---
        50        60         70        80        90       100      

             130       140       150       160       170       180 
pF1KB7 GPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPTNETLYEAP
       : ..::::.: :::::::::: ::. :::::.  :..  . ::::.: :           
CCDS44 GHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQ-CLRLQVSVCCKERRARVLP
           110       120       130       140        150       160  

             190       200       210                
pF1KB7 EPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS             
                                                    
CCDS44 RSPGGGGIPAACTGGANSDRQDGALMGEIRGSEVTLAGACPLITG
            170       180       190       200       




213 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:29:49 2016 done: Fri Nov  4 07:29:49 2016
 Total Scan time:  2.020 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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