Result of FASTA (ccds) for pF1KB7402
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7402, 363 aa
  1>>>pF1KB7402 363 - 363 aa - 363 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5174+/-0.000936; mu= 14.9676+/- 0.056
 mean_var=63.0463+/-12.050, 0's: 0 Z-trim(104.9): 22  B-trim: 0 in 0/51
 Lambda= 0.161527
 statistics sampled from 8130 (8146) to 8130 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.63), E-opt: 0.2 (0.25), width:  16
 Scan time:  2.440

The best scores are:                                      opt bits E(32554)
CCDS32883.1 C3 gene_id:718|Hs108|chr19             (1663)  406 103.6 1.3e-21
CCDS59005.1 C4A gene_id:720|Hs108|chr6             (1698)  315 82.4 3.1e-15
CCDS47404.1 C4A gene_id:720|Hs108|chr6             (1744)  315 82.4 3.2e-15
CCDS47405.1 C4B gene_id:721|Hs108|chr6             (1744)  313 82.0 4.4e-15
CCDS6826.1 C5 gene_id:727|Hs108|chr9               (1676)  276 73.3 1.7e-12
CCDS42519.1 CPAMD8 gene_id:27151|Hs108|chr19       (1932)  274 72.9 2.6e-12


>>CCDS32883.1 C3 gene_id:718|Hs108|chr19                  (1663 aa)
 initn: 510 init1: 304 opt: 406  Z-score: 501.7  bits: 103.6 E(32554): 1.3e-21
Smith-Waterman score: 468; 30.1% identity (52.5% similar) in 396 aa overlap (4-275:764-1156)

                                          10        20         30  
pF1KB7                            MPVRTLFPESWLWRKFTLPKS-KSGISHYPISV
                                     :. :::::::    : .  :.:::   ...
CCDS32 LRRQHARASHLGLARSNLDEDIIAEENIVSRSEFPESWLWNVEDLKEPPKNGISTKLMNI
           740       750       760       770       780       790   

             40        50        60        70        80        90  
pF1KB7 KVPDSITTWQFVVVSLKAGQGLCVSDPFELTVMKSFFVDLKLPSSVIRNEQVQIQAMLYN
        . ::::::....::..  .:.::.::::.:::..::.::.:: ::.:::::.:.:.:::
CCDS32 FLKDSITTWEILAVSMSDKKGICVADPFEVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYN
           800       810       820       830       840       850   

             100       110                                         
pF1KB7 FRDRQA-KVRVEFPHKETLCSAS---------------------------KPG-------
       .:. :  :::::. :. ..:: .                           : :       
CCDS32 YRQNQELKVRVELLHNPAFCSLATTKRRHQQTVTIPPKSSLSVPYVIVPLKTGLQEVEVK
           860       870       880       890       900       910   

        120                     130         140         150        
pF1KB7 -APSHQ--------------AGVQIQQTSYSIVLEPQ--GQ--TQTKLVPRQEFLNMVPD
        :  :.               :.....:    .:.:.  :.  .: . .:  .. ..:::
CCDS32 AAVYHHFISDGVRKSLKVVPEGIRMNKTVAVRTLDPERLGREGVQKEDIPPADLSDQVPD
           920       930       940       950       960       970   

      160                                                          
pF1KB7 TEAEVFISVQG-------------------------------------------------
       ::.:. : .::                                                 
CCDS32 TESETRILLQGTPVAQMTEDAVDAERLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDETEQ
           980       990      1000      1010      1020      1030   

                        170       180       190       200       210
pF1KB7 -------------------YTQMLTHRSSDGTYHTSKGNPGSTWLTSYVFRVFALAYSMM
                          :::.:. :. .... .      :::::.:: .::.:: ...
CCDS32 WEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLI
          1040      1050      1060      1070      1080      1090   

              220       230       240       250        260         
pF1KB7 TTQVLSLSSLCDMANWIIIDRQAEDGHFLEKGPVVMTSMQDGYQGS-EEDVSLTALVLIA
       .   .. . ::  ..:.:...:  :: : : .::.   :  : ... :.:..:::.:::.
CCDS32 A---IDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLIS
             1100      1110      1120      1130      1140      1150

     270       280       290       300       310       320         
pF1KB7 LNEGKELCRQKNLMASIERARGFLERKLPDIQTTFAVAIASYALALANSSQANDCLDSFA
       :.:.:.                                                      
CCDS32 LQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKF
             1160      1170      1180      1190      1200      1210

>>CCDS59005.1 C4A gene_id:720|Hs108|chr6                  (1698 aa)
 initn: 510 init1: 225 opt: 315  Z-score: 387.0  bits: 82.4 E(32554): 3.1e-15
Smith-Waterman score: 343; 25.8% identity (48.1% similar) in 391 aa overlap (1-273:772-1152)

                                             10        20        30
pF1KB7                               MPVRTLFPESWLWRKFTLPKSKSGISHYPI
                                     .:::..:::.::::  :. . .       .
CCDS59 LRKKSRDKGQAGLQRALEILQEEDLIDEDDIPVRSFFPENWLWRVETVDRFQI------L
             750       760       770       780       790           

               40        50        60        70        80        90
pF1KB7 SVKVPDSITTWQFVVVSLKAGQGLCVSDPFELTVMKSFFVDLKLPSSVIRNEQVQIQAML
       .. .:::.:::..  .::.  .::::. : .: :.. : . :.:: :: : ::.... .:
CCDS59 TLWLPDSLTTWEIHGLSLSKTKGLCVATPVQLRVFREFHLHLRLPMSVRRFEQLELRPVL
         800       810       820       830       840       850     

              100       110                          120       130 
pF1KB7 YNFRDRQAKVRVEFPHKETLCSA---------------SKPGA----PSHQAGVQIQQTS
       ::. :..  : :.    : :: :               ..: :    :.  :.:... ..
CCDS59 YNYLDKNLTVSVHVSPVEGLCLAGGGGLAQQVLVPAGSARPVAFSVVPTAAAAVSLKVVA
         860       870       880       890       900       910     

             140               150                            160  
pF1KB7 YSIVLEPQGQTQTKL--------VPRQEFL---------------------NMVPDTEAE
        .    : :.. .:.        . :.:..                     ::.:: . .
CCDS59 RGSFEFPVGDAVSKVLQIEKEGAIHREELVYELNPLDHRGRTLEIPGNSDPNMIPDGDFN
         920       930       940       950       960       970     

                                                                   
pF1KB7 VFISV-------------------------------------------------------
        .. :                                                       
CCDS59 SYVRVTASDPLDTLGSEGALSPGGVASLLRLPRGCGEQTMIYLAPTLAASRYLDKTEQWS
         980       990      1000      1010      1020      1030     

                      170       180       190       200       210  
pF1KB7 ---------------QGYTQMLTHRSSDGTYHTSKGNPGSTWLTSYVFRVFALAYSMMTT
                      .:: ..   :..::.: .  .  .:::::..:..:..::  ..  
CCDS59 TLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGG
        1040      1050      1060      1070      1080      1090     

            220       230       240       250       260       270  
pF1KB7 QVLSLSSLCDMANWIIIDRQAEDGHFLEKGPVVMTSMQDGYQGSEEDVSLTALVLIALNE
          :  .: . .::.. ..:: :: : .  ::.  ::: :  :..: :.:::.: :::..
CCDS59 ---SPEKLQETSNWLLSQQQA-DGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHH
           1100      1110       1120      1130      1140      1150 

            280       290       300       310       320       330  
pF1KB7 GKELCRQKNLMASIERARGFLERKLPDIQTTFAVAIASYALALANSSQANDCLDSFASPS
       :                                                           
CCDS59 GLAVFQDEGAEPLKQRVEASISKANSFLGEKASAGLLGAHAAAITAYALTLTKAPVDLLG
            1160      1170      1180      1190      1200      1210 

>>CCDS47404.1 C4A gene_id:720|Hs108|chr6                  (1744 aa)
 initn: 510 init1: 225 opt: 315  Z-score: 386.8  bits: 82.4 E(32554): 3.2e-15
Smith-Waterman score: 343; 25.8% identity (48.1% similar) in 391 aa overlap (1-273:772-1152)

                                             10        20        30
pF1KB7                               MPVRTLFPESWLWRKFTLPKSKSGISHYPI
                                     .:::..:::.::::  :. . .       .
CCDS47 LRKKSRDKGQAGLQRALEILQEEDLIDEDDIPVRSFFPENWLWRVETVDRFQI------L
             750       760       770       780       790           

               40        50        60        70        80        90
pF1KB7 SVKVPDSITTWQFVVVSLKAGQGLCVSDPFELTVMKSFFVDLKLPSSVIRNEQVQIQAML
       .. .:::.:::..  .::.  .::::. : .: :.. : . :.:: :: : ::.... .:
CCDS47 TLWLPDSLTTWEIHGLSLSKTKGLCVATPVQLRVFREFHLHLRLPMSVRRFEQLELRPVL
         800       810       820       830       840       850     

              100       110                          120       130 
pF1KB7 YNFRDRQAKVRVEFPHKETLCSA---------------SKPGA----PSHQAGVQIQQTS
       ::. :..  : :.    : :: :               ..: :    :.  :.:... ..
CCDS47 YNYLDKNLTVSVHVSPVEGLCLAGGGGLAQQVLVPAGSARPVAFSVVPTAAAAVSLKVVA
         860       870       880       890       900       910     

             140               150                            160  
pF1KB7 YSIVLEPQGQTQTKL--------VPRQEFL---------------------NMVPDTEAE
        .    : :.. .:.        . :.:..                     ::.:: . .
CCDS47 RGSFEFPVGDAVSKVLQIEKEGAIHREELVYELNPLDHRGRTLEIPGNSDPNMIPDGDFN
         920       930       940       950       960       970     

                                                                   
pF1KB7 VFISV-------------------------------------------------------
        .. :                                                       
CCDS47 SYVRVTASDPLDTLGSEGALSPGGVASLLRLPRGCGEQTMIYLAPTLAASRYLDKTEQWS
         980       990      1000      1010      1020      1030     

                      170       180       190       200       210  
pF1KB7 ---------------QGYTQMLTHRSSDGTYHTSKGNPGSTWLTSYVFRVFALAYSMMTT
                      .:: ..   :..::.: .  .  .:::::..:..:..::  ..  
CCDS47 TLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGG
        1040      1050      1060      1070      1080      1090     

            220       230       240       250       260       270  
pF1KB7 QVLSLSSLCDMANWIIIDRQAEDGHFLEKGPVVMTSMQDGYQGSEEDVSLTALVLIALNE
          :  .: . .::.. ..:: :: : .  ::.  ::: :  :..: :.:::.: :::..
CCDS47 ---SPEKLQETSNWLLSQQQA-DGSFQDPCPVLDRSMQGGLVGNDETVALTAFVTIALHH
           1100      1110       1120      1130      1140      1150 

            280       290       300       310       320       330  
pF1KB7 GKELCRQKNLMASIERARGFLERKLPDIQTTFAVAIASYALALANSSQANDCLDSFASPS
       :                                                           
CCDS47 GLAVFQDEGAEPLKQRVEASISKANSFLGEKASAGLLGAHAAAITAYALTLTKAPVDLLG
            1160      1170      1180      1190      1200      1210 

>>CCDS47405.1 C4B gene_id:721|Hs108|chr6                  (1744 aa)
 initn: 516 init1: 225 opt: 313  Z-score: 384.3  bits: 82.0 E(32554): 4.4e-15
Smith-Waterman score: 344; 25.6% identity (48.3% similar) in 391 aa overlap (1-273:772-1152)

                                             10        20        30
pF1KB7                               MPVRTLFPESWLWRKFTLPKSKSGISHYPI
                                     .:::..:::.::::  :. . .       .
CCDS47 LRKKSRDKGQAGLQRALEILQEEDLIDEDDIPVRSFFPENWLWRVETVDRFQI------L
             750       760       770       780       790           

               40        50        60        70        80        90
pF1KB7 SVKVPDSITTWQFVVVSLKAGQGLCVSDPFELTVMKSFFVDLKLPSSVIRNEQVQIQAML
       .. .:::.:::..  .::.  .::::. : .: :.. : . :.:: :: : ::.... .:
CCDS47 TLWLPDSLTTWEIHGLSLSKTKGLCVATPVQLRVFREFHLHLRLPMSVRRFEQLELRPVL
         800       810       820       830       840       850     

              100       110                          120       130 
pF1KB7 YNFRDRQAKVRVEFPHKETLCSA---------------SKPGA----PSHQAGVQIQQTS
       ::. :..  : :.    : :: :               ..: :    :.  ..:... ..
CCDS47 YNYLDKNLTVSVHVSPVEGLCLAGGGGLAQQVLVPAGSARPVAFSVVPTAATAVSLKVVA
         860       870       880       890       900       910     

             140               150                            160  
pF1KB7 YSIVLEPQGQTQTKL--------VPRQEFL---------------------NMVPDTEAE
        .    : :.. .:.        . :.:..                     ::.:: . .
CCDS47 RGSFEFPVGDAVSKVLQIEKEGAIHREELVYELNPLDHRGRTLEIPGNSDPNMIPDGDFN
         920       930       940       950       960       970     

                                                                   
pF1KB7 VFISV-------------------------------------------------------
        .. :                                                       
CCDS47 SYVRVTASDPLDTLGSEGALSPGGVASLLRLPRGCGEQTMIYLAPTLAASRYLDKTEQWS
         980       990      1000      1010      1020      1030     

                      170       180       190       200       210  
pF1KB7 ---------------QGYTQMLTHRSSDGTYHTSKGNPGSTWLTSYVFRVFALAYSMMTT
                      .:: ..   :..::.: .  .  .:::::..:..:..::  ..  
CCDS47 TLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRGSSTWLTAFVLKVLSLAQEQVGG
        1040      1050      1060      1070      1080      1090     

            220       230       240       250       260       270  
pF1KB7 QVLSLSSLCDMANWIIIDRQAEDGHFLEKGPVVMTSMQDGYQGSEEDVSLTALVLIALNE
          :  .: . .::.. ..:: :: : . .::.  ::: :  :..: :.:::.: :::..
CCDS47 ---SPEKLQETSNWLLSQQQA-DGSFQDLSPVIHRSMQGGLVGNDETVALTAFVTIALHH
           1100      1110       1120      1130      1140      1150 

            280       290       300       310       320       330  
pF1KB7 GKELCRQKNLMASIERARGFLERKLPDIQTTFAVAIASYALALANSSQANDCLDSFASPS
       :                                                           
CCDS47 GLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPADLRG
            1160      1170      1180      1190      1200      1210 

>>CCDS6826.1 C5 gene_id:727|Hs108|chr9                    (1676 aa)
 initn: 370 init1: 132 opt: 276  Z-score: 338.0  bits: 73.3 E(32554): 1.7e-12
Smith-Waterman score: 276; 33.3% identity (69.2% similar) in 120 aa overlap (3-122:765-876)

                                           10        20        30  
pF1KB7                             MPVRTLFPESWLWRKFTLPKSKSGISHYPISV
                                     .:. :::::::.   .:. :.      .. 
CCDS68 ASQLRANISHKDMQLGRLHMKTLLPVSKPEIRSYFPESWLWEVHLVPRRKQ------LQF
          740       750       760       770       780              

             40        50        60        70        80        90  
pF1KB7 KVPDSITTWQFVVVSLKAGQGLCVSDPFELTVMKSFFVDLKLPSSVIRNEQVQIQAMLYN
        .:::.:::..  :.. .. :.::.:  .  :.:. :.....: ::.:.::.:... .::
CCDS68 ALPDSLTTWEIQGVGI-SNTGICVADTVKAKVFKDVFLEMNIPYSVVRGEQIQLKGTVYN
      790       800        810       820       830       840       

            100       110       120       130       140       150  
pF1KB7 FRDRQAKVRVEFPHKETLCSASKPGAPSHQAGVQIQQTSYSIVLEPQGQTQTKLVPRQEF
       .:    .  :..   : .:.. .: . .::                              
CCDS68 YRTSGMQFCVKMSAVEGICTSESP-VIDHQGTKSSKCVRQKVEGSSSHLVTFTVLPLEIG
       850       860       870        880       890       900      

>>CCDS42519.1 CPAMD8 gene_id:27151|Hs108|chr19            (1932 aa)
 initn: 510 init1: 221 opt: 274  Z-score: 334.5  bits: 72.9 E(32554): 2.6e-12
Smith-Waterman score: 282; 33.7% identity (60.9% similar) in 184 aa overlap (150-330:1210-1384)

     120       130       140       150       160        170        
pF1KB7 SHQAGVQIQQTSYSIVLEPQGQTQTKLVPRQEFLNMVPDTEAEVF-ISVQGYTQMLTHRS
                                     :.  .. :..: :.    :::: ..::.. 
CCDS42 HLNNLLRLPFGCGEQNMIHFAPNVFVLKYLQKTQQLSPEVERETTDYLVQGYQRQLTYKR
    1180      1190      1200      1210      1220      1230         

      180         190       200       210       220       230      
pF1KB7 SDGTYHT--SKGNPGSTWLTSYVFRVFALAYSMMTTQVLSLSSLCDMANWIIIDRQAEDG
       .::.: .   .   :: :::..:.. :: : :.. ..   :..     .::: ..:: ::
CCDS42 QDGSYSAFGERDASGSMWLTAFVLKSFAQARSFIFVDPRELAA---AKSWIIQQQQA-DG
    1240      1250      1260      1270      1280         1290      

        240       250       260       270       280       290      
pF1KB7 HFLEKGPVVMTSMQDGYQGSEEDVSLTALVLIALNEGKELCRQKNLMASIERARGFLERK
        ::  : :.  ..: : .:.   : ::: :..:: :     ...   .: ..:: :::  
CCDS42 SFLAVGRVLNKDIQGGIHGT---VPLTAYVVVALLETGTASEEER--GSTDKARHFLESA
        1300      1310         1320      1330        1340      1350

        300       310       320       330       340       350      
pF1KB7 LPDIQTTFAVAIASYALALANSSQANDCLDSFASPSGCGMLLNQPQSWSGEGVISNPAMC
        :  .  .. :...:::.:  :  : . : .. :                          
CCDS42 APLAMDPYSCALTTYALTLLRSPAAPEALRKLRSLAIMRDGVTHWSLSNSWDVDKGTFLS
             1360      1370      1380      1390      1400      1410

        360                                                        
pF1KB7 YSSLSVS                                                     
                                                                   
CCDS42 FSDRVSQSVVSAEVEMTAYALLTYTLLGDVAAALPVVKWLSQQRNALGGFSSTQDTCVAL
             1420      1430      1440      1450      1460      1470

>--
 initn: 523 init1: 221 opt: 274  Z-score: 334.5  bits: 72.9 E(32554): 2.6e-12
Smith-Waterman score: 274; 39.5% identity (72.8% similar) in 114 aa overlap (4-117:791-901)

                                          10        20        30   
pF1KB7                            MPVRTLFPESWLWRKFTLPKSKSGISHYPISVK
                                     ::.:::.:.:. ... .. ::  .  .:::
CCDS42 DEAVPAFQPHTGSLVAVAPSRHPPRTEKRKRTFFPETWIWHCLNI-SDPSG--EGTLSVK
              770       780       790       800        810         

            40        50        60        70        80        90   
pF1KB7 VPDSITTWQFVVVSLKAGQGLCVSDPFELTVMKSFFVDLKLPSSVIRNEQVQIQAMLYNF
       ::::::.:   .:.:...::: ...:  : ..: ::::. ::. .::.:::.:   .::.
CCDS42 VPDSITSWVGEAVALSTSQGLGIAEPSLLKTFKPFFVDFMLPALIIRGEQVKIPLSVYNY
       820       830       840       850       860       870       

           100       110       120       130       140       150   
pF1KB7 RDRQAKVRVEFPHKETLCSASKPGAPSHQAGVQIQQTSYSIVLEPQGQTQTKLVPRQEFL
           :.: ...   . .  ...::                                    
CCDS42 MGTCAEVYMKLSVPKGIQFVGHPGKRHVTKKMCVAPGEAEPIWVVLSFSDLGLNNITAKA
       880       890       900       910       920       930       




363 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:27:01 2016 done: Fri Nov  4 07:27:01 2016
 Total Scan time:  2.440 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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