GENSCAN 1.0	Date run:  4-Nov-116	Time: 07:22:44

Sequence gi568815591r:55695916_55934511 : 238596 bp : 44.16% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.07 Intr -   3233   3088  146  1  2  150   83   181 0.972  23.73
 1.06 Intr -  11440  11251  190  2  1  114  110   181 0.994  21.54
 1.05 Intr -  12081  12026   56  2  2   86   44    25 0.279  -3.48
 1.04 Intr -  16770  16581  190  1  1   84  107   182 0.798  18.34
 1.03 Intr -  17335  17190  146  0  2   64   52   136 0.731   7.53
 1.02 Intr -  30163  30106   58  2  1  108  101    21 0.560   3.34
 1.01 Init -  33322  33313   10  1  1  110   97     8 0.597   4.43
 1.00 Prom -  35417  35378   40                              -8.36

 2.00 Prom +  35693  35732   40                              -8.56
 2.01 Sngl +  36229  36516  288  0  0  102   48   242 0.982  17.19
 2.02 PlyA +  37079  37084    6                               1.05

 3.00 Prom +  38454  38493   40                              -4.76
 3.01 Init +  40864  41103  240  0  0   63   75    86 0.539   2.33
 3.02 Intr +  41360  41613  254  1  2   -9   72   365 0.493  21.43
 3.03 Intr +  41620  41947  328  1  1  -50   41   205 0.677  -2.30
 3.04 Intr +  42086  42148   63  1  0   65   16   127 0.633   2.11
 3.05 Term +  42902  43036  135  1  0   93   47   124 0.868   6.82
 3.06 PlyA +  44603  44608    6                               1.05

 4.08 PlyA -  44671  44666    6                              -3.94
 4.07 Term -  47057  46974   84  2  0  105   48    34 0.449  -1.25
 4.06 Intr -  48183  48089   95  1  2   63   36    90 0.625   0.98
 4.05 Intr -  48351  48237  115  0  1   91   82    35 0.757   3.22
 4.04 Intr -  48514  48410  105  1  0  105   71    37 0.791   4.11
 4.03 Intr -  50744  50633  112  1  1   76   43    50 0.540  -0.32
 4.02 Intr -  52297  52240   58  2  1   88  101    49 0.745   4.14
 4.01 Init -  65899  65851   49  1  1   86   27    89 0.134   1.71
 4.00 Prom -  83484  83445   40                              -5.76

 5.00 Prom +  88597  88636   40                              -3.46
 5.01 Init +  89539  89618   80  0  2   77   75    45 0.326   2.63
 5.02 Intr + 102049 102186  138  1  0  120   80   -14 0.135   0.58
 5.03 Intr + 102262 102358   97  1  1   86   75    80 0.690   6.51
 5.04 Intr + 102609 102869  261  2  0   11   72   346 0.477  22.98
 5.05 Term + 107287 107364   78  0  0   70   50    -3 0.047  -8.14
 5.06 PlyA + 107663 107668    6                               1.05

 6.09 PlyA - 107708 107703    6                               1.05
 6.08 Term - 109301 109290   12  2  0   89   28    12 0.266  -6.50
 6.07 Intr - 109475 109343  133  1  1   24   88   135 0.981   7.75
 6.06 Intr - 111343 111175  169  2  1   74   95   115 0.996   9.80
 6.05 Intr - 115511 114908  604  2  1   79   30   517 0.199  37.06
 6.04 Intr - 138671 138510  162  2  0  120   84    55 0.918   8.47
 6.03 Intr - 147213 147027  187  2  1   55   95   103 0.962   7.39
 6.02 Intr - 148803 148608  196  1  1   96  109    77 0.972   9.07
 6.01 Init - 149323 149239   85  1  1   78   89    -6 0.392  -0.45
 6.00 Prom - 150927 150888   40                              -4.76

 7.00 Prom + 155540 155579   40                              -4.46
 7.01 Init + 156661 156825  165  0  0   61   59   128 0.910   6.83
 7.02 Term + 162166 162192   27  0  0   82   49    45 0.756  -1.93
 7.03 PlyA + 162387 162392    6                               1.05

 8.00 Prom + 174715 174754   40                              -1.86
 8.01 Init + 175944 176051  108  2  0   77   39    96 0.236   3.82
 8.02 Intr + 179243 179334   92  1  2   77   93   -12 0.152  -3.01
 8.03 Intr + 181827 181871   45  0  0   70   83    84 0.887   3.62
 8.04 Intr + 182036 182236  201  2  0  -12   89   204 0.931   8.90
 8.05 Intr + 183174 183205   32  0  2   91   37    33 0.334  -3.73
 8.06 Intr + 191369 191583  215  0  2  108   41   172 0.290  12.93
 8.07 Intr + 191646 191765  120  2  0   34  105   113 0.728   8.29
 8.08 Term + 192067 192084   18  0  0  128   49    -3 0.727  -1.88
 8.09 PlyA + 193134 193139    6                               1.05

 9.00 Prom + 195809 195848   40                              -0.36
 9.01 Init + 225683 225919  237  1  0   92   43   163 0.827  10.21
 9.02 Intr + 227247 227373  127  2  1   43   68   162 0.490   9.95
 9.03 Intr + 227692 227784   93  2  0   38  111    52 0.606   2.44

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  77266  77373  108  0  0   98   38   127 0.960   7.21
S.002 Init - 173772 173670  103  0  1   60   68   115 0.974   5.11


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591r:55695916_55934511|GENSCAN_predicted_peptide_1|266_aa
MPGHGTTWLQENKLRAPTDSTLCYDRDSTFNVFVGKGQLITGMDQALVGMCVNERHFVKI
PPKLAYGSEGVSGVIPPNSVLHFDVLLMDIWNSEDRVQIHTYFKPLSCPQTIQVSDFVRY
HYNGTFLDGTLFDSRYSKYSHWQEHPREAVLPRRKDIPGQASLVFDVALLDLHNPKDSIS
IENKAVPENCERLSQSGDFLRYHYNGTLLDGTLFDSSYSQNRTFDTYIGQGYVIPGMDEG
LLGVCIGEKRRIVVPPHLGYGEEGRX

>gi568815591r:55695916_55934511|GENSCAN_predicted_CDS_1|798_bp
atgcctggccatgggaccacctggttgcaggaaaacaagctcagggctcccactgattct
acgttatgctatgacagagactccactttcaacgtgtttgtgggaaaaggacagctgatc
acagggatggaccaggctcttgttgggatgtgcgtaaacgagagacatttcgtgaagatt
cccccaaagcttgcctacggaagtgaaggagtttctggtgtgatcccccccaattcagtg
cttcattttgatgtacttctgatggatatttggaattctgaagaccgggttcagattcac
acctatttcaagcccctgagttgccctcagaccatccaggtgtctgattttgtgaggtac
cactacaacgggacgttcctggacggaactctgtttgattcgagatattcaaaatactcc
cactggcaggaacatccaagagaagcagtactacccagaaggaaagacattcccggtcag
gcatctctggtgtttgatgttgcattattggacctccataaccccaaggacagcatttcc
attgagaacaaggcagtacctgaaaactgtgagcggttaagtcaaagtggggactttctc
aggtatcattacaatggcacgcttctggatggcaccctctttgattccagctactctcag
aaccgcacgtttgacacgtacattgggcagggctacgtgattcctgggatggatgaaggt
ctacttggtgtttgcattggagagaagcgaaggattgtggtcccccctcacctggggtat
ggagaggaaggaagagnn

>gi568815591r:55695916_55934511|GENSCAN_predicted_peptide_2|95_aa
MADEKPNQGVKSENNDHTNLKVAGQDGSVVQFKIKRHTPLSKLMKAYCKQQGLSMRQIRF
RFDGQPIKETDTPAQLEMENEDTIDVFQQQTGGVY

>gi568815591r:55695916_55934511|GENSCAN_predicted_CDS_2|288_bp
atggccgacgaaaagcccaaccaaggagtcaagtcggagaacaacgatcatactaatttg
aaggtggcggggcaggatggttctgtggtgcagtttaagattaagaggcatacaccactt
agtaaactaatgaaagcctattgtaagcaacagggattgtcaatgaggcagatcagattc
cgattcgacgggcaaccaatcaaggaaacagacacacctgcacagttggaaatggagaat
gaagatacaattgatgtgttccaacagcagacgggaggtgtctactga

>gi568815591r:55695916_55934511|GENSCAN_predicted_peptide_3|339_aa
MYLAHRPLMSASSEASGGVSMFVWRNVEPCSVAVFSWYSVPFLTPPCSRVRPSNLPVTQW
PPTRAKNLPSWQLLLTSVHQSLSALRKEQDSSSEKDGRSPNKWDKDHIRWPMSGVHDLQQ
AALGPGRAHQGHPNQDNRTVSQILSERWYTLGPNEMQKYQTWPSRWPTCNKDRKKSSSEA
KPTSQGLAGVYKGSWEQSISETGTATAPGVSSERLSVVAQTFQSSDTKEQLLWGRTAAHS
QGTWLSLAQAFSHSGVLSLDGREIDRQALQELTQHMASEDTASDEEPMVIHEEEGVGEAE
DGLREPETEKAVSSSLHVPWTSAGPDHAALPGPLLLPVH

>gi568815591r:55695916_55934511|GENSCAN_predicted_CDS_3|1020_bp
atgtacttggcccacaggcccctgatgtctgcgtccagcgaggcgtccggtggcgtcagc
atgtttgtgtggaggaatgtggaaccttgttctgtggctgtgttctcctggtactctgtc
cccttcctgacccctccctgcagccgcgtgaggcccagcaacctgccagtcactcagtgg
cctccaaccagagcaaagaacctgccaagttggcagctgttgctcacgagtgtccaccag
tccctcagtgcactgcgcaaggaacaggactcatcttctgagaaggatggacgcagcccc
aacaaatgggacaaggaccatatccggtggcccatgagtggcgttcatgatcttcagcaa
gcggcactaggccctggcagggcgcaccagggtcaccccaaccaggataaccggaccgtc
agccagatcctgagcgagcggtggtacaccctggggcccaatgagatgcagaagtaccag
acctggccttccaggtggcccacttgcaacaaggaccgaaagaagtccagctcagaggcc
aagcccacaagccaggggctagcaggagtgtacaagggctcatgggagcagagcatatca
gagacgggcactgccactgcccctggggtgtcctctgaacgcctgtcagttgtggcccag
acattccagagctcggataccaaggagcagcttctgtggggcaggacggctgcacacagt
cagggaacctggctcagcctggcccaagccttctcccacagcggggtactcagcctggac
ggcagggaaatagaccgtcaggcactacaggaactgacacagcacatggccagtgaggac
acagcgagtgacgaggagcccatggtcatccatgaggaggagggggtgggagaagccgag
gacgggctcagggaaccggagaccgagaaggcggtgtcctcttcactgcacgtgccctgg
accagtgccggccctgatcatgcagctcttccaggcccactgcttcttcctgtccactag

>gi568815591r:55695916_55934511|GENSCAN_predicted_peptide_4|205_aa
MGFRHIGQAGLELLTSGGTIQLQENKLNTPTDSTLWPSSCPTATFPGTAFAFCSLSRPRM
SLTRHLRDELILPARLLPPNNLFGLSACPSPGGLGRPTASSSQAPQAQAPNGLRSVGSST
PSLGLPVTSAGPSRPEVGVSRPCLPASPELSPAKLFGPTYCLSVACTGPALAVEQPLQAR
LLPPNNLFGLSACPSPGGLGRPTAS

>gi568815591r:55695916_55934511|GENSCAN_predicted_CDS_4|618_bp
atggggtttcgccacattggccaggctggtctggaactcctgacctcgggtgggaccatc
cagttgcaggaaaacaagcttaacacgcccactgattctacattatggccaagctcatgc
cccacggcgacttttccaggcacagcttttgccttttgcagcctgtccaggcccagaatg
tccttaactcggcatctccgggacgagctcatcctcccagcccgactgctgcctcccaac
aacctctttggactcagcgcctgcccatctcctggcggccttggtcggcccacagcttcc
tcaagccaagctccccaggcccaggccccaaatggtctccggtcggtgggctcctccacg
cccagcttgggcctcccggtgacctctgcaggcccaagtcgtcctgaagtcggcgtctcc
cggccctgcctcccagcaagccccgaactttctccagccaagctcttcgggcccacctac
tgcctctcggtggcctgtacaggcccagctttggctgtagaacagcctctgcaggcccga
ctgctgcctcccaacaacctttttggactcagcgcctgcccatctcctggcggccttggt
cggcccacagcttcctga

>gi568815591r:55695916_55934511|GENSCAN_predicted_peptide_5|217_aa
MPVNPGEKERGMNIRNQTSPWRRRGHRPKPPWLRRGLRKCEPLPGTPAQTMYSAHRPLML
AFSKASRGLGMFSHAKPSNLPDTQWPPTRQKNLLSWQLLLMSVHQAQSLSALPKEQNSSS
EKDGRSPNKWDKDHIRQPVSGTHDLQQAAPGSGRAHQCHPNQDNWTVSQILGEWWYTLGP
NERQKYHDLTSQCWDYRREPLHPAEPEHFLKEDIKGK

>gi568815591r:55695916_55934511|GENSCAN_predicted_CDS_5|654_bp
atgcctgtgaaccctggtgagaaggagcgtggcatgaacatcaggaaccagacttcaccc
tggagaaggagaggccacaggcccaagccaccttggctgaggagggggctgaggaagtgt
gagcccctgccaggaacccctgcccagaccatgtactcggcccacaggcccctgatgctt
gcattcagcaaggcctcccgtggcctcggcatgttcagccacgcaaagcccagcaacctg
ccagacactcagtggcctccaactagacaaaagaacctgctgagttggcagctgttgctc
atgagcgtccaccaggcccagtctctcagtgccctgcccaaggaacagaactcatcttct
gagaaggatggacgcagccccaacaaatgggacaaggaccacatccggcagcccgtgagt
ggcactcatgatcttcagcaagcggcaccaggctctggcagggcccaccagtgtcacccc
aaccaggacaactggaccgtcagccagatcctgggcgagtggtggtacactctggggccc
aatgagaggcagaagtaccatgacctgacctcccagtgctgggattataggcgagagcca
ctgcacccggctgaacctgaacattttttaaaagaagacataaaaggcaaatag

>gi568815591r:55695916_55934511|GENSCAN_predicted_peptide_6|515_aa
MASSSIHVPAKDMISFFFMAENMCHVLTWETGIGKSTLIDTLFNTNLKDNKSSHFYSNVG
LQIQTYELQESNVQLKLTVVETVGYGDQIDKEASYQPIVDYIDAQFEAYLQEELKIKRSL
FEYHDSRVHVCLYFISPTGHSLKSLDLLTMKNLDSKVNIIPLIAKADTISKNDLQTFKNK
IMSELISNGIQIYQLPTDEETAAQANSSVSPPPNTMAPRKGSSWVAKTNSLGRWKLASFL
KDFDCKVEIRIKPIESDRQNLFKEVDKLYNIQILRLPKALRKDEWHEWLNYFSLGGNKQG
LEEAATADLDITAGAIQTPLTSAETRKVIQVDEMIVEEEEEENKHKNLQIATVKRCPASK
NRTQSVQGKGRRERSSCAITVTLVLGLLDVSIVKPTPGLTPRFDSRVFMIPVENENHCDF
VKLRDMLLCTNMENLKEKTHTQHYECYRYQKLQKMGFTDVGPNNQPVSFQEIFEAKRQEF
YDQCQREEEELKQRFMQRVKEKEATFKEAEKEVPY

>gi568815591r:55695916_55934511|GENSCAN_predicted_CDS_6|1548_bp
atggcctccagctccatccatgttcctgcaaaggacatgatctccttcttttttatggct
gagaacatgtgccatgttctcacttgggagactggaattggaaaatcgacactgatagac
acattgtttaatactaacttgaaagataacaaatcctcacatttttactcaaatgttgga
cttcaaattcagacatatgaacttcaggaaagcaatgttcagttgaaattgactgttgtg
gagacagtagggtatggtgatcaaatagacaaagaagccagctaccaaccaatagttgac
tacatagatgcccaatttgaggcctatcttcaagaagaactgaagattaaacgttccttg
tttgagtaccatgattctcgcgtccacgtgtgtctttacttcatttcacctacaggacat
tccctgaagtctcttgatctattaacaatgaagaaccttgacagtaaggtgaatattata
ccactgattgccaaagcagacactatttctaaaaatgatttacagacgtttaagaataag
ataatgagtgaattgattagcaatggcatccagatatatcagctcccaacagatgaagaa
actgctgctcaagcgaactcctcagttagtcctccacccaacaccatggctcctagaaag
ggcagtagttgggtggccaagaccaactccttagggaggtggaagctcgcctcctttctt
aaagacttcgactgcaaagtggaaatacgaatcaagccaattgagtctgacaggcagaac
ctcttcaaggaggtggataaactctacaacatccagatcctgcggctccccaaggcactg
cgcaaagatgaatggcatgaatggctcaactacttctcccttggaggaaacaaacagggc
ttggaagaggcagcaacagctgacctggatatcaccgcgggagctattcaaacacccctg
acatctgctgaaacacgaaaggtgatacaagtagatgaaatgatagtggaagaggaagaa
gaagaaaataaacataagaatcttcaaattgcaacagtcaaaagatgtcctgcatccaag
aacagaactcagtctgtacaaggaaaaggcagaagggaaaggtcaagctgtgctatcact
gttaccctagttttgggcttattggatgtgtccatagtgaagccaactccaggcctgaca
cccaggtttgactcgagggtcttcatgatccctgtggaaaatgaaaatcactgtgacttc
gttaagctccgagatatgcttctttgtaccaatatggaaaatctaaaagaaaaaacccac
actcagcactatgaatgttataggtaccaaaaactgcagaaaatgggctttacagatgtg
ggtccaaacaaccagccagttagttttcaagaaatctttgaagccaaaagacaagagttc
tatgatcaatgtcagagggaagaagaagagttgaaacagagatttatgcagcgagtcaag
gagaaagaagcaacatttaaagaagctgaaaaagaggtgccctattaa

>gi568815591r:55695916_55934511|GENSCAN_predicted_peptide_7|63_aa
MNLLKEKIGETFQDIDLGKYFLDNAPQAQETKAKMDKWDHMKLKSFYTAKKVINKNKKAF
IYG

>gi568815591r:55695916_55934511|GENSCAN_predicted_CDS_7|192_bp
atgaacctactaaaagaaaagattggggaaactttccaggacattgacctgggcaaatat
ttcttggataatgccccacaagcacaggaaaccaaagcaaaaatggacaaatgggatcat
atgaaattaaaaagcttctacacagcaaagaaagtgatcaacaaaaataaaaaagccttc
atctatgggtga

>gi568815591r:55695916_55934511|GENSCAN_predicted_peptide_8|276_aa
MDNYHTERIAGEIDIPEMSGDGKEQRRAEAISISHRAVCCMLYAVCSSSVAGGRGAGLLS
VAAVLGSPAAEQFFPEYENPERDDPSTIEKLSKNKQKPITPETAEKLAHDLKIVKYVECS
ALTQKGLKNVFDEATLAALEPPESKKSHRVDPVFDETHERPENSGKARGRGPRGPHSPDE
KQTRESWWESGAPAMRIAMKEAGSERRQRMRIGDLRPASCAAIAGRLSSEQAAGPSAPSP
SRVHRGGGGGGGGGGGGVRGRSLPKRPLSAEIFGLL

>gi568815591r:55695916_55934511|GENSCAN_predicted_CDS_8|831_bp
atggataattaccacacagaaagaattgctggagagattgacatacctgagatgtctggg
gatggcaaggaacaaagaagggcagaagctatcagtatcagccacagagctgtatgctgt
atgctctatgcagtatgcagcagttctgttgcagggggtcggggagcagggttgctgtca
gtggcggcagtcctaggcagtcctgcagcagaacagttcttccctgaatacgagaaccca
gaaagagatgatccctctactattgagaaactttccaagaacaaacagaagcctatcact
ccagagactgctgaaaagctggcccatgacctgaagattgtcaagtatgtggagtgttct
gcactcacacagaaaggcctaaagaatgtatttgacgaagcaacattggctgcgctggag
cctccagaatcgaagaagagccacagagtagatccagtatttgatgaaactcatgaaaga
ccggaaaattctgggaaggctcgaggccgcggtccccggggtccgcatagtcccgatgaa
aaacagacccgggaaagctggtgggagtcaggagccccggcgatgaggattgcgatgaag
gaagcaggctcggagcgccgccagcgcatgcgtattggggatctgaggccagcgtcttgc
gccgccattgcggggaggctgtcctcagagcaggctgcggggccctcggcaccttctccc
tcccgggtccaccgcggcggcggcggcggcggcggcggcggcggcggcggcgtcaggggg
cggagcctgccgaagcgccctttgtctgcggagatttttggtcttttatag

>gi568815591r:55695916_55934511|GENSCAN_predicted_peptide_9|153_aa
MVEIARELELEVQPEDVVELLLKDEEKKWFLEMESVPGEDALNNVEMTIVDLEYSINLLD
KAAGGFEKTDSNFERSSTVESLTFQDVAVDFTREEWDQLYPAQKNLYRDVMLENYRNLVA
LGYQLCKPEVIAQLELEEEWVIERDSLLDTHPX

>gi568815591r:55695916_55934511|GENSCAN_predicted_CDS_9|459_bp
atggtggaaatagcaagagaactagaattagaagtgcagcctgaagatgtggtggaattg
ctgcttaaggatgaggaaaaaaagtggtttcttgagatggaatcagttcctggtgaagat
gctttgaataatgtggaaatgacaatagtggatttagaatattccataaacttattagat
aaagcagcaggaggatttgaaaagactgactccaattttgaaagaagttctactgtggaa
tcactgacgtttcaggatgtggccgtggacttcaccagagaggagtgggaccagctgtac
cctgcccaaaagaacctctatcgagacgtgatgctggagaactacaggaatctagttgca
ctggggtatcagctttgtaagccagaggtaatcgcgcagttggagctagaggaagaatgg
gtgatagaaagagacagcctgctggatactcatccagnn