FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7394, 204 aa 1>>>pF1KB7394 204 - 204 aa - 204 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.0453+/-0.000292; mu= 3.8339+/- 0.018 mean_var=204.7351+/-41.647, 0's: 0 Z-trim(124.8): 151 B-trim: 323 in 1/56 Lambda= 0.089635 statistics sampled from 47104 (47275) to 47104 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.554), width: 16 Scan time: 6.280 The best scores are: opt bits E(85289) NP_001303 (OMIM: 601183) cysteine-rich protein 2 i ( 208) 985 138.4 8e-33 NP_001257766 (OMIM: 601183) cysteine-rich protein ( 282) 929 131.3 1.5e-30 NP_001257770 (OMIM: 601183) cysteine-rich protein ( 87) 454 69.4 2e-12 NP_001302 (OMIM: 123875) cysteine-rich protein 1 [ ( 77) 378 59.5 1.7e-09 NP_003467 (OMIM: 600824,607482,612124) cysteine an ( 194) 310 51.1 1.4e-06 NP_001287894 (OMIM: 601871) cysteine and glycine-r ( 193) 258 44.3 0.00015 NP_001312 (OMIM: 601871) cysteine and glycine-rich ( 193) 258 44.3 0.00015 XP_005253974 (OMIM: 602505) PREDICTED: paxillin is ( 403) 258 44.6 0.00026 XP_016875232 (OMIM: 602505) PREDICTED: paxillin is ( 424) 258 44.7 0.00027 NP_079433 (OMIM: 602505) paxillin isoform 4 [Homo ( 424) 258 44.7 0.00027 NP_001180500 (OMIM: 123876) cysteine and glycine-r ( 193) 251 43.4 0.00028 NP_004069 (OMIM: 123876) cysteine and glycine-rich ( 193) 251 43.4 0.00028 NP_001180501 (OMIM: 123876) cysteine and glycine-r ( 193) 251 43.4 0.00028 NP_002850 (OMIM: 602505) paxillin isoform 1 [Homo ( 557) 258 44.8 0.00032 XP_016875231 (OMIM: 602505) PREDICTED: paxillin is ( 563) 258 44.8 0.00033 XP_016875230 (OMIM: 602505) PREDICTED: paxillin is ( 589) 258 44.8 0.00034 NP_001074324 (OMIM: 602505) paxillin isoform 2 [Ho ( 591) 258 44.8 0.00034 XP_016875229 (OMIM: 602505) PREDICTED: paxillin is ( 597) 258 44.8 0.00034 NP_001230685 (OMIM: 602505) paxillin isoform 3 [Ho ( 605) 258 44.8 0.00034 XP_016875228 (OMIM: 602505) PREDICTED: paxillin is ( 611) 258 44.8 0.00035 XP_016875227 (OMIM: 602505) PREDICTED: paxillin is ( 645) 258 44.8 0.00036 XP_016875226 (OMIM: 602505) PREDICTED: paxillin is ( 700) 258 44.9 0.00038 XP_016875225 (OMIM: 602505) PREDICTED: paxillin is ( 748) 258 44.9 0.0004 XP_016875224 (OMIM: 602505) PREDICTED: paxillin is ( 858) 258 44.9 0.00044 XP_016875223 (OMIM: 602505) PREDICTED: paxillin is ( 888) 258 45.0 0.00045 XP_016875222 (OMIM: 602505) PREDICTED: paxillin is ( 940) 258 45.0 0.00047 XP_011536925 (OMIM: 602505) PREDICTED: paxillin is ( 996) 258 45.0 0.00049 XP_016875220 (OMIM: 602505) PREDICTED: paxillin is ( 996) 258 45.0 0.00049 XP_006719598 (OMIM: 602505) PREDICTED: paxillin is ( 996) 258 45.0 0.00049 XP_006719597 (OMIM: 602505) PREDICTED: paxillin is ( 996) 258 45.0 0.00049 XP_011536924 (OMIM: 602505) PREDICTED: paxillin is ( 996) 258 45.0 0.00049 XP_006719599 (OMIM: 602505) PREDICTED: paxillin is ( 996) 258 45.0 0.00049 XP_016875218 (OMIM: 602505) PREDICTED: paxillin is (1087) 258 45.0 0.00052 XP_016875217 (OMIM: 602505) PREDICTED: paxillin is (1127) 258 45.1 0.00054 XP_006719595 (OMIM: 602505) PREDICTED: paxillin is (1129) 258 45.1 0.00054 XP_016875216 (OMIM: 602505) PREDICTED: paxillin is (1130) 258 45.1 0.00054 XP_016875215 (OMIM: 602505) PREDICTED: paxillin is (1135) 258 45.1 0.00054 NP_057011 (OMIM: 602353) transforming growth facto ( 444) 248 43.4 0.00067 NP_001158191 (OMIM: 602353) transforming growth fa ( 444) 248 43.4 0.00067 NP_001035919 (OMIM: 602353) transforming growth fa ( 461) 248 43.4 0.00069 XP_006718813 (OMIM: 605390) PREDICTED: leupaxin is ( 290) 228 40.6 0.003 XP_011543692 (OMIM: 605390) PREDICTED: leupaxin is ( 366) 228 40.7 0.0035 XP_011543693 (OMIM: 605390) PREDICTED: leupaxin is ( 366) 228 40.7 0.0035 NP_001294880 (OMIM: 605390) leupaxin isoform 3 [Ho ( 366) 228 40.7 0.0035 XP_011543690 (OMIM: 605390) PREDICTED: leupaxin is ( 366) 228 40.7 0.0035 NP_004802 (OMIM: 605390) leupaxin isoform 2 [Homo ( 386) 228 40.7 0.0037 NP_001137467 (OMIM: 605390) leupaxin isoform 1 [Ho ( 391) 228 40.7 0.0037 XP_016859580 (OMIM: 602567) PREDICTED: LIM and sen ( 317) 218 39.4 0.0078 XP_016859583 (OMIM: 602567) PREDICTED: LIM and sen ( 317) 218 39.4 0.0078 XP_016859582 (OMIM: 602567) PREDICTED: LIM and sen ( 317) 218 39.4 0.0078 >>NP_001303 (OMIM: 601183) cysteine-rich protein 2 isofo (208 aa) initn: 959 init1: 480 opt: 985 Z-score: 710.3 bits: 138.4 E(85289): 8e-33 Smith-Waterman score: 985; 63.3% identity (80.9% similar) in 199 aa overlap (1-197:1-199) 10 20 30 40 50 60 pF1KB7 MSWTCPRCQQPVFFAEKVSSLGKNWHRFCLKCERCHSILSPGGHAEHNGRPYCHKPCYGA :. ::.:.. :.::::::::::.::.:::::::: . :.:::::::.:.:.::::::.. NP_001 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT 10 20 30 40 50 60 70 80 90 100 110 pF1KB7 LFGPRGVNIGGVGSYLYNPP-TPSPGCTTPLS-PSSFSPPRPRTGLPQGKKSPPHMKTFT ::::.::::::.:::.:. : . .: : :. :.. . : .: :.: . . ::: NP_001 LFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFT 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB7 GETSLCPGCGEPVYFAEKVMSLGRNWHRPCLRCQRCHKTLTAGSHAEHDGVPYCHVPCYG :: . :: :.. ::::::: :::..::::::::.:: :::: :.:::::: :::: :::: NP_001 GEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCYG 130 140 150 160 170 180 180 190 200 pF1KB7 YLFGPKGVNIGDVGCYIYDPVKIKFK :::::::: : :: :::: NP_001 ILFGPKGVNTGAVGSYIYDRDPEGKVQP 190 200 >>NP_001257766 (OMIM: 601183) cysteine-rich protein 2 is (282 aa) initn: 882 init1: 480 opt: 929 Z-score: 669.5 bits: 131.3 E(85289): 1.5e-30 Smith-Waterman score: 929; 62.6% identity (78.3% similar) in 198 aa overlap (2-197:77-273) 10 20 30 pF1KB7 MSWTCPRCQQPVFFAEKVSSLGKNWHRFCLK : :: .: :::::::::.::.:::: NP_001 GCVCKGGGCCHREPSQDHHESQEHRGPLVGSQTC-LVHQAEGTAEKVSSLGKDWHKFCLK 50 60 70 80 90 100 40 50 60 70 80 90 pF1KB7 CERCHSILSPGGHAEHNGRPYCHKPCYGALFGPRGVNIGGVGSYLYNPP-TPSPGCTTPL :::: . :.:::::::.:.:.::::::..::::.::::::.:::.:. : . .: : :. NP_001 CERCSKTLTPGGHAEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPLAEGPQVTGPI 110 120 130 140 150 160 100 110 120 130 140 pF1KB7 S-PSSFSPPRPRTGLPQGKKSPPHMKTFTGETSLCPGCGEPVYFAEKVMSLGRNWHRPCL :.. . : .: :.: . . ::::: . :: :.. ::::::: :::..:::::: NP_001 EVPAARAEERKASGPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCL 170 180 190 200 210 220 150 160 170 180 190 200 pF1KB7 RCQRCHKTLTAGSHAEHDGVPYCHVPCYGYLFGPKGVNIGDVGCYIYDPVKIKFK ::.:: :::: :.:::::: :::: :::: :::::::: : :: :::: NP_001 RCERCGKTLTPGGHAEHDGQPYCHKPCYGILFGPKGVNTGAVGSYIYDRDPEGKVQP 230 240 250 260 270 280 >>NP_001257770 (OMIM: 601183) cysteine-rich protein 2 is (87 aa) initn: 451 init1: 451 opt: 454 Z-score: 344.1 bits: 69.4 E(85289): 2e-12 Smith-Waterman score: 454; 69.2% identity (89.7% similar) in 78 aa overlap (1-78:1-78) 10 20 30 40 50 60 pF1KB7 MSWTCPRCQQPVFFAEKVSSLGKNWHRFCLKCERCHSILSPGGHAEHNGRPYCHKPCYGA :. ::.:.. :.:::::.::::.::: ::.:::: . :.:::::::.:.::::::::: NP_001 MASKCPKCDKTVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCYGI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 LFGPRGVNIGGVGSYLYNPPTPSPGCTTPLSPSSFSPPRPRTGLPQGKKSPPHMKTFTGE ::::.::: :.::::.:. NP_001 LFGPKGVNTGAVGSYIYDRDPEGKVQP 70 80 >>NP_001302 (OMIM: 123875) cysteine-rich protein 1 [Homo (77 aa) initn: 378 init1: 378 opt: 378 Z-score: 291.7 bits: 59.5 E(85289): 1.7e-09 Smith-Waterman score: 378; 58.9% identity (87.7% similar) in 73 aa overlap (5-77:4-76) 10 20 30 40 50 60 pF1KB7 MSWTCPRCQQPVFFAEKVSSLGKNWHRFCLKCERCHSILSPGGHAEHNGRPYCHKPCYGA ::.:.. :.:::.:.::::.::: :::::.: . :. ::::::.:.:::..:::.: NP_001 MPKCPKCNKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYAA 10 20 30 40 50 70 80 90 100 110 120 pF1KB7 LFGPRGVNIGGVGSYLYNPPTPSPGCTTPLSPSSFSPPRPRTGLPQGKKSPPHMKTFTGE .:::.: . ::. :. . NP_001 MFGPKGFGRGGAESHTFK 60 70 >>NP_003467 (OMIM: 600824,607482,612124) cysteine and gl (194 aa) initn: 403 init1: 209 opt: 310 Z-score: 239.0 bits: 51.1 E(85289): 1.4e-06 Smith-Waterman score: 429; 35.1% identity (61.1% similar) in 185 aa overlap (5-189:10-184) 10 20 30 40 50 pF1KB7 MSWTCPRCQQPVFFAEKVSSLGKNWHRFCLKCERCHSILSPGGHAEHNGRPYCHK : :.. :. ::... :...:. :..: :.. :. : :... :: : NP_003 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYC-K 10 20 30 40 50 60 70 80 90 100 110 pF1KB7 PCYGALFGPRGVNIGGVGSYLYNPPTPSPGCTTPLSPSSFSPPRPRTGLPQGKKSPPHMK ::: .::.:.. : .. : . : ::. : : : ..: .. NP_003 VCYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPK---PARSVT-----TSNPSKFT 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB7 TFTGETSLCPGCGEPVYFAEKVMSLGRNWHRPCLRCQRCHKTLTAGSHAEHDGVPYCHVP . ::. :: ::. :: :::::. :. ::. :.:: : :.: . . ...:: ::.: NP_003 AKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKV- 120 130 140 150 160 170 180 190 200 pF1KB7 CYGYLFGPKGVNIGDVGCYIYDPVKIKFK ::. ::: :...: NP_003 CYAKNFGPTGIGFGGLTQQVEKKE 180 190 >>NP_001287894 (OMIM: 601871) cysteine and glycine-rich (193 aa) initn: 389 init1: 185 opt: 258 Z-score: 202.6 bits: 44.3 E(85289): 0.00015 Smith-Waterman score: 416; 35.5% identity (60.2% similar) in 186 aa overlap (5-189:10-183) 10 20 30 40 50 pF1KB7 MSWTCPRCQQPVFFAEKVSSLGKNWHRFCLKCERCHSILSPGGHAEHNGRPYCHK : : . :. ::.:. :...:: :. : :.. :. : :. . :: : NP_001 MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYC-K 10 20 30 40 50 60 70 80 90 100 110 pF1KB7 PCYGALFGPRGVNIG-GVGSYLYNPPTPSPGCTTPLSPSSFSPPRPRTGLPQGKKSPPHM ::: .::.: . : :.:. .. : ..: : .: :: :. :. .: NP_001 SCYGKKYGPKGYGYGQGAGTLNMDR-----GERLGIKPESVQPHRPTTN-PNTSK---FA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB7 KTFTGETSLCPGCGEPVYFAEKVMSLGRNWHRPCLRCQRCHKTLTAGSHAEHDGVPYCHV . . : . : ::. :: :::... :. ::. :.:: .: :.: . . .:..: ::. NP_001 QKYGGAEK-CSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCK- 120 130 140 150 160 180 190 200 pF1KB7 PCYGYLFGPKGVNIGDVGCYIYDPVKIKFK ::. ::::: . : NP_001 GCYAKNFGPKGFGYGQGAGALVHAQ 170 180 190 >>NP_001312 (OMIM: 601871) cysteine and glycine-rich pro (193 aa) initn: 389 init1: 185 opt: 258 Z-score: 202.6 bits: 44.3 E(85289): 0.00015 Smith-Waterman score: 416; 35.5% identity (60.2% similar) in 186 aa overlap (5-189:10-183) 10 20 30 40 50 pF1KB7 MSWTCPRCQQPVFFAEKVSSLGKNWHRFCLKCERCHSILSPGGHAEHNGRPYCHK : : . :. ::.:. :...:: :. : :.. :. : :. . :: : NP_001 MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYC-K 10 20 30 40 50 60 70 80 90 100 110 pF1KB7 PCYGALFGPRGVNIG-GVGSYLYNPPTPSPGCTTPLSPSSFSPPRPRTGLPQGKKSPPHM ::: .::.: . : :.:. .. : ..: : .: :: :. :. .: NP_001 SCYGKKYGPKGYGYGQGAGTLNMDR-----GERLGIKPESVQPHRPTTN-PNTSK---FA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB7 KTFTGETSLCPGCGEPVYFAEKVMSLGRNWHRPCLRCQRCHKTLTAGSHAEHDGVPYCHV . . : . : ::. :: :::... :. ::. :.:: .: :.: . . .:..: ::. NP_001 QKYGGAEK-CSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCK- 120 130 140 150 160 180 190 200 pF1KB7 PCYGYLFGPKGVNIGDVGCYIYDPVKIKFK ::. ::::: . : NP_001 GCYAKNFGPKGFGYGQGAGALVHAQ 170 180 190 >>XP_005253974 (OMIM: 602505) PREDICTED: paxillin isofor (403 aa) initn: 258 init1: 130 opt: 258 Z-score: 198.5 bits: 44.6 E(85289): 0.00026 Smith-Waterman score: 268; 27.9% identity (54.7% similar) in 179 aa overlap (5-174:170-337) 10 20 30 pF1KB7 MSWTCPRCQQPVFFAEKVSSLGKNWHRFCLKCER : :..:. .. :...::.:: . : . XP_005 PKPGSQLDSMLGSLQSDLNKLGVATVAKGVCGACKKPIA-GQVVTAMGKTWHPEHFVCTH 140 150 160 170 180 190 40 50 60 70 80 pF1KB7 CHSILSPGGHAEHNGRPYCHKPCYGALFGPR-----GVNIGGVGSYLYNPPTPS----PG :. .. . :..:.:::.: : ::.:: : . : . : : XP_005 CQEEIGSRNFFERDGQPYCEKD-YHNLFSPRCYYCNGPILDKVVTALDRTWHPEHFFCAQ 200 210 220 230 240 250 90 100 110 120 130 140 pF1KB7 CTTPLSPSSFSPPRPRTGLPQGKKSPPHMKTFTGETSLCPGCGEPVYFAEKVMSLGRNWH : . ..: .: . . : .:. .. :. . : ::.. . . . . .:. :: XP_005 CGAFFGPEGF---HEKDGKAYCRKD--YFDMFAPK---CGGCARAI-LENYISALNTLWH 260 270 280 290 300 150 160 170 180 190 200 pF1KB7 RPCLRCQRCHKTLTAGSHAEHDGVPYCHVPCYGYLFGPKGVNIGDVGCYIYDPVKIKFK :. :..: .. :: :::: :::.: XP_005 PECFVCRECFTPFVNGSFFEHDGQPYCEVHYHERRGSLCSGCQKPITGRCITAMAKKFHP 310 320 330 340 350 360 >>XP_016875232 (OMIM: 602505) PREDICTED: paxillin isofor (424 aa) initn: 258 init1: 130 opt: 258 Z-score: 198.2 bits: 44.7 E(85289): 0.00027 Smith-Waterman score: 268; 27.9% identity (54.7% similar) in 179 aa overlap (5-174:191-358) 10 20 30 pF1KB7 MSWTCPRCQQPVFFAEKVSSLGKNWHRFCLKCER : :..:. .. :...::.:: . : . XP_016 PKPGSQLDSMLGSLQSDLNKLGVATVAKGVCGACKKPIA-GQVVTAMGKTWHPEHFVCTH 170 180 190 200 210 40 50 60 70 80 pF1KB7 CHSILSPGGHAEHNGRPYCHKPCYGALFGPR-----GVNIGGVGSYLYNPPTPS----PG :. .. . :..:.:::.: : ::.:: : . : . : : XP_016 CQEEIGSRNFFERDGQPYCEKD-YHNLFSPRCYYCNGPILDKVVTALDRTWHPEHFFCAQ 220 230 240 250 260 270 90 100 110 120 130 140 pF1KB7 CTTPLSPSSFSPPRPRTGLPQGKKSPPHMKTFTGETSLCPGCGEPVYFAEKVMSLGRNWH : . ..: .: . . : .:. .. :. . : ::.. . . . . .:. :: XP_016 CGAFFGPEGF---HEKDGKAYCRKD--YFDMFAPK---CGGCARAI-LENYISALNTLWH 280 290 300 310 320 150 160 170 180 190 200 pF1KB7 RPCLRCQRCHKTLTAGSHAEHDGVPYCHVPCYGYLFGPKGVNIGDVGCYIYDPVKIKFK :. :..: .. :: :::: :::.: XP_016 PECFVCRECFTPFVNGSFFEHDGQPYCEVHYHERRGSLCSGCQKPITGRCITAMAKKFHP 330 340 350 360 370 380 >>NP_079433 (OMIM: 602505) paxillin isoform 4 [Homo sapi (424 aa) initn: 258 init1: 130 opt: 258 Z-score: 198.2 bits: 44.7 E(85289): 0.00027 Smith-Waterman score: 268; 27.9% identity (54.7% similar) in 179 aa overlap (5-174:191-358) 10 20 30 pF1KB7 MSWTCPRCQQPVFFAEKVSSLGKNWHRFCLKCER : :..:. .. :...::.:: . : . NP_079 PKPGSQLDSMLGSLQSDLNKLGVATVAKGVCGACKKPIA-GQVVTAMGKTWHPEHFVCTH 170 180 190 200 210 40 50 60 70 80 pF1KB7 CHSILSPGGHAEHNGRPYCHKPCYGALFGPR-----GVNIGGVGSYLYNPPTPS----PG :. .. . :..:.:::.: : ::.:: : . : . : : NP_079 CQEEIGSRNFFERDGQPYCEKD-YHNLFSPRCYYCNGPILDKVVTALDRTWHPEHFFCAQ 220 230 240 250 260 270 90 100 110 120 130 140 pF1KB7 CTTPLSPSSFSPPRPRTGLPQGKKSPPHMKTFTGETSLCPGCGEPVYFAEKVMSLGRNWH : . ..: .: . . : .:. .. :. . : ::.. . . . . .:. :: NP_079 CGAFFGPEGF---HEKDGKAYCRKD--YFDMFAPK---CGGCARAI-LENYISALNTLWH 280 290 300 310 320 150 160 170 180 190 200 pF1KB7 RPCLRCQRCHKTLTAGSHAEHDGVPYCHVPCYGYLFGPKGVNIGDVGCYIYDPVKIKFK :. :..: .. :: :::: :::.: NP_079 PECFVCRECFTPFVNGSFFEHDGQPYCEVHYHERRGSLCSGCQKPITGRCITAMAKKFHP 330 340 350 360 370 380 204 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 07:21:48 2016 done: Fri Nov 4 07:21:49 2016 Total Scan time: 6.280 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]