GENSCAN 1.0	Date run:  4-Nov-116	Time: 07:07:34

Sequence gi568815591f:55812676_56040003 : 227328 bp : 44.01% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 PlyA -   3647   3642    6                               1.05
 1.05 Term -  14607  14554   54  0  0  105   55    31 0.218  -0.94
 1.04 Intr -  21911  21750  162  2  0  120   84    55 0.918   8.47
 1.03 Intr -  30453  30267  187  2  1   55   95   103 0.962   7.39
 1.02 Intr -  32043  31848  196  1  1   96  109    77 0.972   9.07
 1.01 Init -  32563  32479   85  1  1   78   89    -6 0.392  -0.45
 1.00 Prom -  34167  34128   40                              -4.76

 2.00 Prom +  38780  38819   40                              -4.46
 2.01 Init +  39901  40065  165  0  0   61   59   128 0.910   6.83
 2.02 Term +  45406  45432   27  0  0   82   49    45 0.756  -1.93
 2.03 PlyA +  45627  45632    6                               1.05

 3.00 Prom +  57955  57994   40                              -1.86
 3.01 Init +  59184  59291  108  2  0   77   39    96 0.236   3.82
 3.02 Intr +  62483  62574   92  1  2   77   93   -12 0.152  -3.01
 3.03 Intr +  65067  65111   45  0  0   70   83    84 0.887   3.62
 3.04 Intr +  65276  65476  201  2  0  -12   89   204 0.931   8.90
 3.05 Intr +  66414  66445   32  0  2   91   37    33 0.334  -3.73
 3.06 Intr +  74609  74823  215  0  2  108   41   172 0.290  12.93
 3.07 Intr +  74886  75005  120  2  0   34  105   113 0.728   8.29
 3.08 Term +  75307  75324   18  0  0  128   49    -3 0.727  -1.88
 3.09 PlyA +  76374  76379    6                               1.05

 4.00 Prom +  79049  79088   40                              -0.36
 4.01 Init + 108923 109159  237  1  0   92   43   163 0.824  10.21
 4.02 Intr + 110487 110613  127  2  1   43   68   162 0.531   9.95
 4.03 Intr + 110932 111024   93  2  0   38  111    52 0.667   2.44
 4.04 Term + 126307 127331 1025  2  2   44   32   391 0.219  21.38
 4.05 PlyA + 128805 128810    6                               1.05

 5.00 Prom + 129988 130027   40                              -5.06
 5.01 Init + 133147 133196   50  0  2   69   34    71 0.243   0.22
 5.02 Intr + 139141 139255  115  1  1   -7  105   105 0.431   3.15
 5.03 Term + 142234 142503  270  0  0   94   48   161 0.765   8.18
 5.04 PlyA + 143806 143811    6                               1.05

 6.00 Prom + 147219 147258   40                              -1.76
 6.01 Init + 151935 152026   92  2  2   99  105   173 0.999  18.06
 6.02 Intr + 165451 165590  140  1  2  107   65    72 0.436   6.91
 6.03 Term + 188399 188529  131  0  2    0   54   117 0.037  -2.16
 6.04 PlyA + 190020 190025    6                               1.05

 7.04 PlyA - 190034 190029    6                               1.05
 7.03 Term - 192388 192245  144  1  0   81   47   180 0.996  11.11
 7.02 Intr - 194141 194050   92  0  2   89   63    21 0.734  -0.59
 7.01 Init - 195303 195192  112  0  1   71   29    73 0.385   0.07
 7.00 Prom - 195532 195493   40                              -4.86

 8.07 PlyA - 197760 197755    6                               1.05
 8.06 Term - 199194 199087  108  0  0  121   38   137 0.999  10.51
 8.05 Intr - 202496 202348  149  0  2  109   34   103 0.992   6.95
 8.04 Intr - 204704 204559  146  1  2   80  107    12 0.933   2.23
 8.03 Intr - 207059 206925  135  1  0  100  116    66 0.994  10.28
 8.02 Intr - 208556 208398  159  1  0   93   23   145 0.818   7.60
 8.01 Intr - 221503 221286  218  1  2   59  110   123 0.499   8.90

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  57012  56910  103  0  1   60   68   115 0.974   5.11


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591f:55812676_56040003|GENSCAN_predicted_peptide_1|227_aa
MASSSIHVPAKDMISFFFMAENMCHVLTWETGIGKSTLIDTLFNTNLKDNKSSHFYSNVG
LQIQTYELQESNVQLKLTVVETVGYGDQIDKEASYQPIVDYIDAQFEAYLQEELKIKRSL
FEYHDSRVHVCLYFISPTGHSLKSLDLLTMKNLDSKVNIIPLIAKADTISKNDLQTFKNK
IMSELISNGIQIYQLPTDEETAAQANSSVSERCSFVYKGEAASPFST

>gi568815591f:55812676_56040003|GENSCAN_predicted_CDS_1|684_bp
atggcctccagctccatccatgttcctgcaaaggacatgatctccttcttttttatggct
gagaacatgtgccatgttctcacttgggagactggaattggaaaatcgacactgatagac
acattgtttaatactaacttgaaagataacaaatcctcacatttttactcaaatgttgga
cttcaaattcagacatatgaacttcaggaaagcaatgttcagttgaaattgactgttgtg
gagacagtagggtatggtgatcaaatagacaaagaagccagctaccaaccaatagttgac
tacatagatgcccaatttgaggcctatcttcaagaagaactgaagattaaacgttccttg
tttgagtaccatgattctcgcgtccacgtgtgtctttacttcatttcacctacaggacat
tccctgaagtctcttgatctattaacaatgaagaaccttgacagtaaggtgaatattata
ccactgattgccaaagcagacactatttctaaaaatgatttacagacgtttaagaataag
ataatgagtgaattgattagcaatggcatccagatatatcagctcccaacagatgaagaa
actgctgctcaagcgaactcctcagttagtgaacgctgctcctttgtgtacaaaggggaa
gcagcttcacctttcagcacatga

>gi568815591f:55812676_56040003|GENSCAN_predicted_peptide_2|63_aa
MNLLKEKIGETFQDIDLGKYFLDNAPQAQETKAKMDKWDHMKLKSFYTAKKVINKNKKAF
IYG

>gi568815591f:55812676_56040003|GENSCAN_predicted_CDS_2|192_bp
atgaacctactaaaagaaaagattggggaaactttccaggacattgacctgggcaaatat
ttcttggataatgccccacaagcacaggaaaccaaagcaaaaatggacaaatgggatcat
atgaaattaaaaagcttctacacagcaaagaaagtgatcaacaaaaataaaaaagccttc
atctatgggtga

>gi568815591f:55812676_56040003|GENSCAN_predicted_peptide_3|276_aa
MDNYHTERIAGEIDIPEMSGDGKEQRRAEAISISHRAVCCMLYAVCSSSVAGGRGAGLLS
VAAVLGSPAAEQFFPEYENPERDDPSTIEKLSKNKQKPITPETAEKLAHDLKIVKYVECS
ALTQKGLKNVFDEATLAALEPPESKKSHRVDPVFDETHERPENSGKARGRGPRGPHSPDE
KQTRESWWESGAPAMRIAMKEAGSERRQRMRIGDLRPASCAAIAGRLSSEQAAGPSAPSP
SRVHRGGGGGGGGGGGGVRGRSLPKRPLSAEIFGLL

>gi568815591f:55812676_56040003|GENSCAN_predicted_CDS_3|831_bp
atggataattaccacacagaaagaattgctggagagattgacatacctgagatgtctggg
gatggcaaggaacaaagaagggcagaagctatcagtatcagccacagagctgtatgctgt
atgctctatgcagtatgcagcagttctgttgcagggggtcggggagcagggttgctgtca
gtggcggcagtcctaggcagtcctgcagcagaacagttcttccctgaatacgagaaccca
gaaagagatgatccctctactattgagaaactttccaagaacaaacagaagcctatcact
ccagagactgctgaaaagctggcccatgacctgaagattgtcaagtatgtggagtgttct
gcactcacacagaaaggcctaaagaatgtatttgacgaagcaacattggctgcgctggag
cctccagaatcgaagaagagccacagagtagatccagtatttgatgaaactcatgaaaga
ccggaaaattctgggaaggctcgaggccgcggtccccggggtccgcatagtcccgatgaa
aaacagacccgggaaagctggtgggagtcaggagccccggcgatgaggattgcgatgaag
gaagcaggctcggagcgccgccagcgcatgcgtattggggatctgaggccagcgtcttgc
gccgccattgcggggaggctgtcctcagagcaggctgcggggccctcggcaccttctccc
tcccgggtccaccgcggcggcggcggcggcggcggcggcggcggcggcggcgtcaggggg
cggagcctgccgaagcgccctttgtctgcggagatttttggtcttttatag

>gi568815591f:55812676_56040003|GENSCAN_predicted_peptide_4|493_aa
MVEIARELELEVQPEDVVELLLKDEEKKWFLEMESVPGEDALNNVEMTIVDLEYSINLLD
KAAGGFEKTDSNFERSSTVESLTFQDVAVDFTREEWDQLYPAQKNLYRDVMLENYRNLVA
LGYQLCKPEVIAQLELEEEWVIERDSLLDTHPDGENRPEIKKSTTSQNISDENQTHEMIM
ERLAGDSFWYSILGGLWDFDYHPEFNQENHKRYLGQVTLTHKKITQERSLECNKFAENCN
LNSNLMQQRIPSIKIPLNSDTQGNSIKHNSDLIYYQGNYVRETPYEYSECGKIFNQHILL
TDHIHTAEKPSECGKAFSHTSSLSQPQMLLTGEKPYKCDECGKRFSQRIHLIQHQRIHTG
EKPFICNGCGKAFRQHSSFTQHLRIHTGEKPYKCNQCGKAFSRITSLTEHHRLHTGEKPY
ECGFCGKAFSQRTHLNQHERTHTGEKPYKCNECGKAFSQSAHLNQHRKIHTREKLCEYKC
EQTVRHSPSFSST

>gi568815591f:55812676_56040003|GENSCAN_predicted_CDS_4|1482_bp
atggtggaaatagcaagagaactagaattagaagtgcagcctgaagatgtggtggaattg
ctgcttaaggatgaggaaaaaaagtggtttcttgagatggaatcagttcctggtgaagat
gctttgaataatgtggaaatgacaatagtggatttagaatattccataaacttattagat
aaagcagcaggaggatttgaaaagactgactccaattttgaaagaagttctactgtggaa
tcactgacgtttcaggatgtggccgtggacttcaccagagaggagtgggaccagctgtac
cctgcccaaaagaacctctatcgagacgtgatgctggagaactacaggaatctagttgca
ctggggtatcagctttgtaagccagaggtaatcgcgcagttggagctagaggaagaatgg
gtgatagaaagagacagcctgctggatactcatccagatggagaaaacagacccgaaatc
aaaaagtcaaccacaagccagaatatttctgatgaaaatcaaacccatgagatgataatg
gagagactcgcaggagacagcttctggtactccatcctaggaggactctgggattttgat
taccatccagagtttaaccaagaaaaccacaagagatatttaggacaagtaactttgacc
cacaaaaagatcacacaggagagaagccttgagtgtaataaatttgcagaaaactgtaat
ctgaactcaaaccttatgcagcagagaattccttccattaaaatacccctgaattctgac
acacagggaaacagcatcaaacataattcagacttgatttactatcagggaaattatgta
agagagactccctatgaatatagtgagtgtggaaaaatcttcaatcaacatattcttctt
actgatcatattcatactgcagagaaacccagtgagtgtgggaaggccttcagccacacc
tcatctcttagccagcctcagatgttgcttacaggagagaagccctataagtgtgatgaa
tgtggaaaaagattcagccagaggatacatctcattcaacatcagagaattcacacagga
gaaaagccttttatatgcaatggatgtgggaaagccttccgtcagcattcatcctttact
caacatctgaggattcatactggagaaaagccctataaatgtaatcaatgtggtaaagct
tttagccgcatcacatcccttactgaacatcatagacttcataccggagagaaaccttac
gaatgtggtttctgtggcaaagccttcagtcagaggacacatctgaatcaacatgaaaga
actcatacaggagagaaaccctataaatgtaatgaatgcgggaaagcctttagccagagt
gcacaccttaatcaacacaggaaaatccatactcgggagaaattatgtgaatataaatgt
gagcaaactgttcgccacagtccttcatttagcagcacataa

>gi568815591f:55812676_56040003|GENSCAN_predicted_peptide_5|144_aa
MEFSEEDEQNLDIPEKRRCTAYERGSVGLSQCVRRDAIPLRPALPGAGGCIVLAEYFNKR
KTYFAHDALQQCTVGDIVLLRALPVPRAKHVKHELAEIVFKVGKVIDPVTGKPCAGTTYL
ESPLSSETTQLSKNLEELNISSAQ

>gi568815591f:55812676_56040003|GENSCAN_predicted_CDS_5|435_bp
atggaattctcagaagaggatgagcagaacttggacatcccagaaaaaaggagatgcacg
gcctacgagaggggtagtgtgggactgagccaatgcgtacggcgtgacgccatcccgctg
cgaccggcgctccccggggcaggtggctgcatagtcttggcggagtattttaataagcgg
aaaacctactttgctcacgatgcccttcagcagtgcacagttggggatattgtgcttctc
agagctttacctgttccacgagcaaagcatgtgaaacatgaactggctgagatcgttttc
aaagttggaaaagtcatagatccagtgacaggaaagccctgtgctggaactacctacctg
gagagtccgttgagttcggaaaccacccagctaagcaaaaatctggaagaactcaatatc
tcttcagcacagtga

>gi568815591f:55812676_56040003|GENSCAN_predicted_peptide_6|120_aa
MAARVLRARGAAWAGGLLQRAAPCSLLPRLRTWTSSSNRSREDSWLKSLFVRKVDPRKDA
HSNLLAKKETSNLYKLQLRLEELTKGVTVVRGEDQDEEEPAKETKKPPGNSADTQASEAS

>gi568815591f:55812676_56040003|GENSCAN_predicted_CDS_6|363_bp
atggcggcgcgagtgctgcgcgcccgcggagcggcctgggccggcggcctcctgcagcgg
gcggccccctgcagcctcctgcccaggctccggacatggacatcttccagcaacagatct
cgagaagacagctggctaaaatccttatttgtccggaaagttgatccaagaaaagatgcc
cactccaatctcctagccaaaaaggaaacaagcaatctatacaaattacagttgagacta
gaggagctcaccaagggagtgactgtagtcagaggagaggatcaagatgaggaggaacct
gcaaaagagactaagaaaccaccagggaactcagcagacactcaagcaagtgaggcgtca
tga

>gi568815591f:55812676_56040003|GENSCAN_predicted_peptide_7|115_aa
MADCPCDAIVHSDYEHRLRKQKELRIGIMKPRAEIFQAGKYPTRVHDSCEITFRAGTRGN
DFHTILYLSLNVVDPEVCLTQLPPGGHLPVGQLHAACSAGPTDPHTDTDCADMLQ

>gi568815591f:55812676_56040003|GENSCAN_predicted_CDS_7|348_bp
atggctgattgtccgtgtgacgccattgttcattctgattatgaacaccgcttacgtaaa
cagaaagagctaagaattgggatcatgaagccaagagcagaaatttttcaggctgggaaa
taccctaccagagttcatgacagctgtgagattacattcagagctggaacccgaggcaat
gatttccacaccattctttatctttccctcaatgtggtggatccagaagtctgccttaca
caactgccccctggtggccaccttcccgtgggacagttacatgcagcctgttcagcaggc
cccactgaccctcacaccgacacggactgtgcagatatgctgcagtga

>gi568815591f:55812676_56040003|GENSCAN_predicted_peptide_8|304_aa
SRQIWCLQFTEALAELIRSHPAYQQISRERSVEALGLHSSPPWELLARASEPALAPCSRK
VAAAGAPEAQDTGRKILPAMVSHSELRKLFYSADAVCFDVDSTVIREEGIDELAKICGVE
DAVSEMTRRAMGGAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQER
NVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKV
IKLLKEKFHFKKIIMIGDGATDMEACPPADAFIGFGGNVIRQQVKDNAKWYITDFVELLG
ELEE

>gi568815591f:55812676_56040003|GENSCAN_predicted_CDS_8|915_bp
agcagacagatctggtgtctccagtttacagaagcacttgcagaactcatcagaagccac
cccgcttatcagcagatctcaagagagcgttcggtggaggccctgggtctgcacagctca
cctccctgggaactgctcgcccgagcgtcggagccggcgctggccccctgcagccggaag
gttgcagccgcaggagccccggaggcccaggacacagggaggaaaattcttccagcgatg
gtctcccactcagagctgaggaagcttttctactcagcagatgctgtgtgttttgatgtt
gacagcacggtcatcagagaagaaggaatcgatgagctagccaaaatctgtggcgttgag
gacgcggtgtcagaaatgacacggcgagccatgggcggggcagtgcctttcaaagctgct
ctcacagagcgcttagccctcatccagccctccagggagcaggtgcagagactcatagca
gagcaacccccacacctgacccccggcataagggagctggtaagtcgcctacaggagcga
aatgttcaggttttcctaatatctggtggctttaggagtattgtagagcatgttgcttca
aagctcaatatcccagcaaccaatgtatttgccaataggctgaaattctactttaacggt
gaatatgcaggttttgatgagacgcagccaacagctgaatctggtggaaaaggaaaagtg
attaaacttttaaaggaaaaatttcattttaagaaaataatcatgattggagatggtgcc
acagatatggaagcctgtcctcctgctgatgctttcattggatttggaggaaatgtgatc
aggcaacaagtcaaggataacgccaaatggtatatcactgattttgtagagctgctggga
gaactggaagaataa