GENSCAN 1.0	Date run:  4-Nov-116	Time: 06:52:46

Sequence gi568815586r:120245594_120469091 : 223498 bp : 48.46% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +   2980   3150  171  0  0  105   39   122 0.263   6.83
 1.02 PlyA +   3546   3551    6                               1.05

 2.00 Prom +   9802   9841   40                              -4.16
 2.01 Init +  20035  20347  313  0  1   65   80   117 0.393   4.09
 2.02 Term +  36654  37123  470  1  2   36   48   609 0.945  46.84
 2.03 PlyA +  37242  37247    6                               1.05

 3.00 Prom +  48265  48304   40                              -1.06
 3.01 Init +  57975  58465  491  2  2   64   61   283 0.244  17.88
 3.02 Intr +  66827  67157  331  2  1   72   70   234 0.224  15.63
 3.03 Term +  67291  67443  153  0  0  112   47    54 0.971   1.62
 3.04 PlyA +  67628  67633    6                               1.05

 4.06 PlyA -  67932  67927    6                               1.05
 4.05 Term -  76724  76600  125  0  2  114   42   185 0.996  15.05
 4.04 Intr -  79468  79341  128  0  2  101   42   161 0.996  13.12
 4.03 Intr -  80427  80268  160  1  1   81  108   349 0.884  35.25
 4.02 Intr -  90674  90489  186  0  0   67   74    60 0.485   2.16
 4.01 Init -  91568  91514   55  2  1   92   87     0 0.368   1.89
 4.00 Prom -  92560  92521   40                              -6.06

 5.15 PlyA -  92955  92950    6                               1.05
 5.14 Term -  97512  97477   36  0  0   85   52    64 0.495  -0.16
 5.13 Intr - 100696 100542  155  2  2  106   84   252 0.953  26.39
 5.12 Intr - 101921 101853   69  0  0   94   99    92 0.994  10.05
 5.11 Intr - 102095 102069   27  0  0   99   63    34 0.510   0.09
 5.10 Intr - 107786 107706   81  0  0   97  131    91 0.991  13.91
 5.09 Intr - 111426 111309  118  0  1   35   59   121 0.687   3.94
 5.08 Intr - 112305 112223   83  1  2   92  101   107 0.981  11.76
 5.07 Intr - 113460 113412   49  0  1   66  105   123 0.916  10.05
 5.06 Intr - 117542 117450   93  2  0  112   98   150 0.994  18.56
 5.05 Intr - 119162 119121   42  2  0   97  100    14 0.737   1.94
 5.04 Intr - 122499 122415   85  2  1   53   79    84 0.608   3.82
 5.03 Intr - 122680 122599   82  2  1   35   99   134 0.986   7.90
 5.02 Intr - 122894 122824   71  1  2   66   40    64 0.626  -1.77
 5.01 Init - 123388 123240  149  1  2  121   84    97 0.680  10.17
 5.00 Prom - 137666 137627   40                              -4.76

 6.04 PlyA - 138777 138772    6                               1.05
 6.03 Term - 143431 143353   79  0  1   77   38   106 0.823   1.74
 6.02 Intr - 147765 147704   62  0  2   77  107    32 0.718   1.53
 6.01 Init - 150205 150152   54  1  0   92   90    59 0.814   5.78
 6.00 Prom - 166572 166533   40                              -1.96

 7.00 Prom + 166705 166744   40                              -3.86
 7.01 Init + 192534 192636  103  2  1   85   84    74 0.818   5.65
 7.02 Intr + 192786 192928  143  1  2   85  107   240 0.941  25.67
 7.03 Term + 195187 195270   84  0  0   92   44    51 0.665  -1.25
 7.04 PlyA + 197807 197812    6                               1.05

 8.03 PlyA - 198398 198393    6                               1.05
 8.02 Term - 199362 199279   84  0  0   97   43   101 0.996   4.15
 8.01 Init - 200779 200633  147  1  0   97   99   298 0.636  31.89
 8.00 Prom - 200827 200788   40                             -16.83

 9.00 Prom + 200845 200884   40                             -16.89
 9.01 Init + 200888 200968   81  1  0   53  103   115 0.999   8.49
 9.02 Intr + 201064 201236  173  0  2  121   97   359 0.997  38.84
 9.03 Intr + 211483 211586  104  1  2   70   98   142 0.974  13.22
 9.04 Term + 213034 213041    8  2  2  121   42     0 0.606  -3.27
 9.05 PlyA + 214108 214113    6                              -0.45

10.04 PlyA - 215804 215799    6                               1.05
10.03 Term - 216569 216426  144  2  0  117   53    47 0.825   2.01
10.02 Intr - 218514 218357  158  1  2   51   90   191 0.676  15.33
10.01 Intr - 220194 220103   92  2  2   98   47   103 0.590   6.84

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  82160  82127   34  2  1   64   96    58 0.861   2.51


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:120245594_120469091|GENSCAN_predicted_peptide_1|56_aa
WHRVASPSLASRNQNRVYNVSKGLYATVTESNPSSTTNQQLTSGKLLTSLCFSVVS

>gi568815586r:120245594_120469091|GENSCAN_predicted_CDS_1|171_bp
tggcaccgcgtggcatcaccctcattggcgagcaggaatcagaacagagtctacaatgtc
agcaaagggctgtatgcgacagtcactgaatccaatcccagctccaccactaatcagcaa
ctaacctcgggcaagttgctcacctctctgtgcttcagtgtcgtcagctag

>gi568815586r:120245594_120469091|GENSCAN_predicted_peptide_2|260_aa
MAGPRAPAQGRASCPSRGRSSMPRNFSAASLGPERNAPPPRAPAPAPAARPAPGRPLCTR
APPPDTPASLLAPPPAHAGPAPAKSPGSGRRWAGRWRPLAAKRAASRTTANLERTFITIR
PDSMQCGLVGKIIKRFEQKGFRLVAMKFLPASEEHLKQHYIDLKDRPFFPGLVKYMNSGP
VVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISL
RFKPEELVDYKSCAHDWVYE

>gi568815586r:120245594_120469091|GENSCAN_predicted_CDS_2|783_bp
atggccggaccacgggcgccggctcagggtcgcgctagctgcccgtcccggggccgctcg
tctatgccccgcaacttttccgccgcgagcctcggcccggaacggaacgcgccgccgccg
cgcgcgcccgcgcccgcgcccgccgcgcgccccgcccccggccgccccctgtgcacgcgc
gccccgcccccggacacccccgcgagcttgctggccccgccccctgcgcacgctggtccc
gcccccgccaagagcccgggcagtgggcgtcgctgggcggggcggtggcgccccctcgcg
gctaagcgggcagcttcccggaccacggccaacctcgagcgcaccttcatcaccatcagg
ccggacagcatgcagtgcggcctggtgggcaagatcatcaagcgcttcgagcagaagggg
ttccgcctcgtggccatgaagttcctcccggcctctgaagaacacctgaagcagcactac
attgacctgaaggaccgcccattcttccctgggctggtgaagtacatgaactcagggccg
gtcgtggccatggtctgggaggggctgaacgtcgtgaagacaggccgagtgatgcttggg
gagaccaatccagcagattctaagccaggcaccattcgtggggacttttgcattcaggtt
ggcaggaacatcattcatggcagtgattcagtaaaaagtgctgaaaaagaaatcagccta
cggtttaagcctgaagaactggttgactacaagtcttgtgctcatgactgggtctatgaa
taa

>gi568815586r:120245594_120469091|GENSCAN_predicted_peptide_3|324_aa
MSFALTFRSAKGRWIANPSQPCSKASIGLFVPASPPLDPEKVKELQRFITLSKRLLVMTG
AGISTESGIPDYRSEKVGLYARTDRRPIQHGDFVRSAPIRQRYWARNFVGWPQFSSHQPN
PAHWALSTWEKLGKLYWLVTQNVDALHTKAGSRRLTELHGCMDRAYCSVSVFLGSRVLCL
DCGEQTPRGVLQERFQVLNPTWSAEAHGLAPDGDVFLSEEQVRSFQVPTCVQCGGHLKPD
VVFFGDTVNPDKVDFVHKRVKEADSLLVVGSSLQVYSGYRFILTAWEKKLPIAILNIGPT
RSDDLACLKLNSRCGELLPLIDPC

>gi568815586r:120245594_120469091|GENSCAN_predicted_CDS_3|975_bp
atgagctttgcgttgactttcaggtcagcaaaaggccgttggatcgcaaaccccagccag
ccgtgctcgaaagcctccattgggttatttgtgccagcaagtcctcctctggaccctgag
aaggtcaaagagttacagcgcttcatcaccctttccaagagactccttgtgatgactggg
gcaggaatctccaccgaatcggggataccagactacaggtcagaaaaagtggggctttat
gcccgcactgaccgcaggcccatccagcatggtgattttgtccggagtgccccaatccgc
cagcggtactgggcgagaaacttcgtaggctggcctcaattctcctcccaccagcctaac
cctgcacactgggctttgagcacctgggagaaactcggaaagctgtactggttggtgacc
caaaatgtggatgctttgcacaccaaggcggggagtcggcgcctgacagagctccacgga
tgcatggacagggcatactgttcagtcagcgtcttccttggttccagggtcctgtgcttg
gattgtggggaacagactccccggggggtgctgcaagagcgtttccaagtcctgaacccc
acctggagtgctgaggcccatggcctggctcctgatggtgacgtctttctctcagaggag
caagtccggagctttcaggtcccaacctgcgttcaatgtggaggccatctgaaaccagat
gtcgttttcttcggggacacagtgaaccctgacaaggttgattttgtgcacaagcgtgta
aaagaagccgactccctcttggtggtgggatcatccttgcaggtatactctggttacagg
tttatcctcactgcctgggagaagaagctcccgattgcaatactgaacattgggcccaca
cggtcggatgacttggcgtgtctgaaactgaattctcgttgtggagagttgctgcctttg
atagacccatgctga

>gi568815586r:120245594_120469091|GENSCAN_predicted_peptide_4|217_aa
MVPCIPATPAPAVAKRSQETRECRNKDTRQRDKRKDSWARGTTTTKSRRPVVALNVWLHC
YLLDTKQKGQGKECESSPMILAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYC
GLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNK
ECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS

>gi568815586r:120245594_120469091|GENSCAN_predicted_CDS_4|654_bp
atggtgccctgcatcccagccactccagctccagctgtggctaaaaggagccaagagacg
agagagtgtagaaataaagacacaagacaaagagataaaagaaaagacagctgggcccgg
ggaaccactaccaccaagtcacggagaccggtagtggccctgaatgtctggctgcactgt
tatttattggatacaaagcaaaaggggcagggtaaagagtgcgagtcatctccaatgata
ctggccgccgccgacagcggcatcagccctcgggccgtgtggcagttccgcaaaatgatc
aagtgcgtgatcccggggagtgaccccttcttggaatacaacaactacggctgctactgt
ggcttggggggctcaggcacccccgtggatgaactggacaagtgctgccagacacatgac
aactgctatgaccaggccaagaagctggacagctgtaaatttctgctggacaacccgtac
acccacacctattcatactcgtgctctggctcggcaatcacctgtagcagcaaaaacaaa
gagtgtgaggccttcatttgcaactgcgaccgcaacgctgccatctgcttttcaaaagct
ccatataacaaggcacacaagaacctggacaccaagaagtattgtcagagttga

>gi568815586r:120245594_120469091|GENSCAN_predicted_peptide_5|379_aa
MADPGPAGPPRSPGPRPLRPGARRSRGPFVSLLLPQQDVHRGTQLADYAGPARPSASRGP
GGRQEAQRERGEGEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ
SRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAML
MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRS
RVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPGQDTDGVAQAIPLTAY
GPMAAAAAAAAVVRGTGSTPSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPS
TGFGHSLGRPSLQLTEDHE

>gi568815586r:120245594_120469091|GENSCAN_predicted_CDS_5|1140_bp
atggccgatccgggtccggccgggcctccccggagcccgggcccgcgccccctgcgccct
ggcgcccggcgctcacgcgggccctttgtgtctctcctcctcccgcagcaagatgttcat
cgggggactcagttggcagactacgcaggcccagctcggccctcggcttcccggggcccc
ggtgggcgccaggaggctcagcgggaacggggcgagggcgaagggctgcgcgaatacttc
ggccagttcggggaggtgaaggagtgtctggtgatgcgggaccccctgaccaagagatcc
aggggtttcggcttcgtcactttcatggaccaggcgggggtggataaagtgctggcgcaa
tcgcggcacgagctcgactccaaaacaattgaccctaaggtggccttccctcggcgagca
cagcccaagatggtgactcgaacgaagaagatctttgtgggggggctgtcggtgaacacc
acggtggaggacgtgaagcaatattttgagcagtttgggaaggtggacgacgccatgctg
atgtttgacaaaaccaccaaccggcaccgagggttcgggtttgtcacgtttgagagtgag
gacatcgtggagaaagtgtgtgaaattcattttcatgaaatcaacaacaaaatggtggaa
tgtaagaaagctcagccaaaggaggtgatgtcgccaacgggctcagcccgggggaggtct
cgagtcatgccctacggaatggacgccttcatgctgggcatcggcatgctgggttaccca
ggtttccaagccacaacctacgccagccggagttatacaggcctcgcccctggctacacc
taccagttccccggtcaggacacagatggtgtggcccaagccattcctctcactgcctac
ggaccaatggcggcggcagcggcggcagcggctgtggttcgagggacaggttcgactccc
agccgcacagggggcttcctggggaccaccagccccggccccatggccgagctctacggg
gcggccaaccaggactcgggggtcagcagttacatcagcgccgccagccctgcccccagc
accggcttcggccacagtcttgggcgccccagcctgcagctgactgaggaccacgagtga

>gi568815586r:120245594_120469091|GENSCAN_predicted_peptide_6|64_aa
MGRARWLTPVIPALLEAEVPIMHPLSACSLCHPVNALVRSRDADWLRAGPWAQRCVSIIV
RDCE

>gi568815586r:120245594_120469091|GENSCAN_predicted_CDS_6|195_bp
atgggccgggcacggtggctcacacctgtaatcccagcacttttggaggctgaggtcccc
atcatgcacccgctcagtgcttgttctctctgccatcctgtcaatgcccttgtgagatca
cgtgatgccgactggctccgagctgggccctgggctcagcgctgtgtgagcatcattgta
cgggactgtgaatag

>gi568815586r:120245594_120469091|GENSCAN_predicted_peptide_7|109_aa
MAVVGVSSVSRLLGRSRPQLGRPMSSGAHGEEGSARMWKTLTFFVALPGVAVSMLNVYLK
SHHGEHERPEFIAYPHLRIRTKKLAFELQVSVQVEKKLALVISVSTVKV

>gi568815586r:120245594_120469091|GENSCAN_predicted_CDS_7|330_bp
atggcggtagttggtgtgtcctcggtttctcggctgctgggtcggtcccgcccacagctg
gggcggcctatgtcgagtggcgcccatggcgaagagggctcagctcgcatgtggaagact
ctcaccttcttcgtcgcgctccccggggtggcagtcagcatgctgaatgtgtacctgaag
tcgcaccacggagagcacgagagacccgagttcatcgcctacccccatctccgcatcagg
accaagaaattagcatttgagcttcaagtcagtgtccaagttgaaaagaaattggcatta
gttatttctgtttccacagtgaaggtctag

>gi568815586r:120245594_120469091|GENSCAN_predicted_peptide_8|76_aa
MNSVGEACTDMKREYDQCFNRWFAEKFLKGDSSGDPCTDLFKRYQQCVQKAIKEKEIPIE
GLEFMGHGKEKPENSS

>gi568815586r:120245594_120469091|GENSCAN_predicted_CDS_8|231_bp
atgaacagtgtgggggaggcatgcacggacatgaagcgcgagtacgaccagtgcttcaat
cgctggttcgccgagaaatttctcaagggggacagctccggggacccgtgcaccgacctc
ttcaagcgctaccagcagtgtgttcagaaagcaataaaggagaaagagattcctattgaa
ggactggagttcatgggccatggcaaagaaaagcctgaaaattcttcttga

>gi568815586r:120245594_120469091|GENSCAN_predicted_peptide_9|121_aa
MWSRLVWLGLRAPLGGRQGFTSKADPQGSGRITAAVIEHLERLALVDFGSREAVARLEKA
IAFADRLRAVDTDGVEPMESVLEDRCLYLRSDNVVEGNCADELLQNSHRVVEEYFVAPPG
R

>gi568815586r:120245594_120469091|GENSCAN_predicted_CDS_9|366_bp
atgtggtcgcggttggtgtggctgggccttcgggcccctctgggcgggcgccagggcttc
acctccaaggcggatcctcagggcagtggccggatcacggctgcggtgatcgagcacctg
gagcgtctagcgcttgtggacttcggcagccgcgaggcagtggcgcgactggagaaagct
atcgccttcgccgaccggctacgcgccgtggacacagacggggtggagcccatggaatcg
gtcctggaggacagatgtctatacctgagatccgacaatgtggtagaaggcaactgtgct
gatgaattactacaaaactcccatcgcgtcgtggaggagtactttgtggcccccccaggt
aggtga

>gi568815586r:120245594_120469091|GENSCAN_predicted_peptide_10|131_aa
XDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGSWQDLKDHMREAGDVCYADVQKDGVGMV
EYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSTSYGYSRSRSGSRGRDSPYQSRG
SPHYFSPFRPY

>gi568815586r:120245594_120469091|GENSCAN_predicted_CDS_10|396_bp
nnagatgcagaggatgctatttatggaagaaatggttatgattatggccagtgtcggctt
cgtgtggagttccccaggacttatggaggtcggggcagctggcaggacctgaaggatcac
atgcgagaagctggggatgtctgttatgctgatgtgcagaaggatggagtggggatggtc
gagtatctcagaaaagaagacatggaatatgccctgcgtaaactggatgacaccaaattc
cgctctcatgagggtgaaacttcctacatccgagtttatcctgagagaagcaccagctat
ggctactcacggtctcggtctgggtcaaggggccgtgactctccataccaaagcaggggt
tccccacactacttctctcctttcaggccctactga