GENSCAN 1.0	Date run:  4-Nov-116	Time: 06:30:28

Sequence gi568815596f:85654190_85864183 : 209994 bp : 48.38% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.11 PlyA -    238    233    6                               1.05
 1.10 Term -   7128   7039   90  0  0   82   48    68 0.417  -0.08
 1.09 Intr -   7920   7840   81  0  0   94   86    81 0.990   8.33
 1.08 Intr -   9302   9157  146  0  2   79   86    78 0.702   6.70
 1.07 Intr -   9658   9475  184  1  1   87   63   358 0.999  32.56
 1.06 Intr -  11189  11100   90  2  0  109  100    29 0.982   6.39
 1.05 Intr -  11605  11417  189  1  0  112   94   131 0.986  15.88
 1.04 Intr -  12553  12428  126  1  0   95   46   243 0.999  21.68
 1.03 Intr -  12988  12917   72  1  0  108   95   103 0.882  12.60
 1.02 Intr -  13617  13490  128  1  2   34   78   -29 0.810  -8.90
 1.01 Init -  13994  13928   67  2  1   92  105   147 0.884  16.10
 1.00 Prom -  22612  22573   40                              -4.06

 2.00 Prom +  32425  32464   40                              -4.36
 2.01 Init +  40230  40281   52  2  1  111  110   119 0.999  15.74
 2.02 Intr +  40727  40807   81  0  0  111   93    35 0.984   5.91
 2.03 Intr +  41131  41234  104  2  2   71   98   106 0.983   9.79
 2.04 Intr +  41769  41867   99  2  0   81   94    98 0.982  10.01
 2.05 Intr +  43317  43488  172  2  1   65  109    25 0.869   1.82
 2.06 Intr +  48863  48911   49  0  1   85  105    -7 0.027  -1.56
 2.07 Intr +  56985  57101  117  0  0   96   48   112 0.167   7.58
 2.08 Term +  58859  59018  160  2  1   91   39    49 0.089  -2.29
 2.09 PlyA +  61645  61650    6                               1.05

 3.00 Prom +  63147  63186   40                              -3.56
 3.01 Init +  66824  66909   86  1  2   91   83    55 0.328   5.59
 3.02 Intr +  76171  76220   50  1  2   44   89    57 0.396  -0.28
 3.03 Term +  77449  77567  119  2  2   95   53    96 0.829   5.50
 3.04 PlyA +  80778  80783    6                               1.05

 4.00 Prom +  82580  82619   40                              -5.16
 4.01 Init + 100001 100768  768  1  0   96   80   773 0.961  72.00
 4.02 Intr + 109802 109993  192  1  0  136   91   264 0.861  31.19
 4.03 Intr + 113416 113451   36  0  0  100   87    20 0.452   1.56
 4.04 Intr + 117389 117573  185  1  2   84   89    50 0.330   3.29
 4.05 Intr + 117776 117905  130  2  1   -8   66    97 0.129  -1.40
 4.06 Intr + 124945 125103  159  0  0   84   72   141 0.807  12.28
 4.07 Intr + 141796 141923  128  0  2  119   36    33 0.265   0.68
 4.08 Intr + 146229 146352  124  0  1   96   87   102 0.741  11.49
 4.09 Intr + 156092 156146   55  1  1   79   73    -8 0.015  -4.65
 4.10 Intr + 156516 156656  141  1  0   99   39    70 0.152   3.52
 4.11 Intr + 157615 157766  152  2  2   77  115    37 0.179   5.18
 4.12 Term + 159373 159480  108  0  0   51   51    65 0.102  -2.39
 4.13 PlyA + 160962 160967    6                               1.05

 5.00 Prom + 161363 161402   40                              -7.86
 5.01 Init + 161650 161786  137  0  2   61  121   109 0.899  11.13
 5.02 Intr + 163505 163598   94  2  1    8   89    66 0.626  -1.33
 5.03 Intr + 164119 164207   89  0  2   68  105    35 0.411   1.97
 5.04 Term + 169807 169912  106  1  1  108   55    71 0.576   3.68
 5.05 PlyA + 172577 172582    6                               1.05

 6.00 Prom + 177333 177372   40                              -2.46
 6.01 Init + 184410 184608  199  2  1   57   69   110 0.866   3.80
 6.02 Term + 185354 185562  209  0  2   55   51   129 0.816   3.40
 6.03 PlyA + 185780 185785    6                               1.05

 7.07 PlyA - 185820 185815    6                              -0.45
 7.06 Term - 186203 185955  249  2  0   90   47   191 0.989  10.90
 7.05 Intr - 190365 190207  159  0  0   82   63    80 0.922   5.08
 7.04 Intr - 192374 192188  187  1  1   82  107   -24 0.865  -1.41
 7.03 Intr - 194015 193672  344  2  2   41   83   381 0.876  27.13
 7.02 Intr - 207103 206992  112  0  1   89   72    48 0.693   3.68
 7.01 Intr - 209296 209173  124  2  1  104  108    -2 0.625   3.04

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr - 198855 198761   95  1  2  -12   44   181 0.826   3.38


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:85654190_85864183|GENSCAN_predicted_peptide_1|390_aa
MAESHLLQWLLLLLPTLCGPGTAAWTTSSLACAQGPEFWCQSLEQALQCRALGHCLQEVW
GHVGADDLCQECEDIVHILNKMAKEAIFQDTMRKFLEQECNVLPLKLLMPQCNQVLDDYF
PLVIDYFQNQTDSNGICMHLGLCKSRQPEPEQEPGMSDPLPKPLRDPLPDPLLDKLVLPV
LPGALQARPGPHTQDLSEQQFPIPLPYCWLCRALIKRIQAMIPKGALAVAVAQVCRVVPL
VAGGICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDDSAGPRSPTGEWLPRDSECH
LCMSVTTQAGNSSEQAIPQAMLQACVGSWLDREKCKQFVEQHTPQLLTLVPRGWDAHTTC
QLEAPEGFWLAIRKTPFPDPEHCPAQNPSH

>gi568815596f:85654190_85864183|GENSCAN_predicted_CDS_1|1173_bp
atggctgagtcacacctgctgcagtggctgctgctgctgctgcccacgctctgtggccca
ggcactgctgcctggaccacctcatccttggcctgtgcccagggccctgagttctggtgc
caaagcctggagcaagcattgcagtgcagagccctagggcattgcctacaggaagtctgg
ggacatgtgggagccgatgacctatgccaagagtgtgaggacatcgtccacatccttaac
aagatggccaaggaggccattttccaggacacgatgaggaagttcctggagcaggagtgc
aacgtcctccccttgaagctgctcatgccccagtgcaaccaagtgcttgacgactacttc
cccctggtcatcgactacttccagaaccagactgactcaaacggcatctgtatgcacctg
ggcctgtgcaaatcccggcagccagagccagagcaggagccagggatgtcagaccccctg
cccaaacctctgcgggaccctctgccagaccctctgctggacaagctcgtcctccctgtg
ctgcccggggccctccaggcgaggcctgggcctcacacacaggatctctccgagcagcaa
ttccccattcctctcccctattgctggctctgcagggctctgatcaagcggatccaagcc
atgattcccaagggtgcgctagctgtggcagtggcccaggtgtgccgcgtggtacctctg
gtggcgggcggcatctgccagtgcctggctgagcgctactccgtcatcctgctcgacacg
ctgctgggccgcatgctgccccagctggtctgccgcctcgtcctccggtgctccatggat
gacagcgctggcccaaggtcgccgacaggagaatggctgccgcgagactctgagtgccac
ctctgcatgtccgtgaccacccaggccgggaacagcagcgagcaggccataccacaggca
atgctccaggcctgtgttggctcctggctggacagggaaaagtgcaagcaatttgtggag
cagcacacgccccagctgctgaccctggtgcccaggggctgggatgcccacaccacctgc
cagctggaggctcctgagggcttctggctggccatcaggaaaacaccctttccggacccc
gagcactgccccgcccagaaccccagtcactga

>gi568815596f:85654190_85864183|GENSCAN_predicted_peptide_2|277_aa
MATWALLLLAAMLLGNPGLEVSVSPKGKNTSGRESGFGWAIWMEGLVFSRLSPEYYDLAR
AHLRDEEKSCPCLAQEGPQGDLLTKTQELGRDYRTCLTIVQKLKKMVDKPTQRSVSNAAT
RVCRTGRSRWRDVCRNFMRRYQSRVTQGLVAGETAQQICEDLRLCIPSTGIYSYKFPFWH
SLSYNPARVGSSGDHGGGHEILTGDLKLLYKPSNPDRSPTHNQQRSSDVWRLPIEVNVAE
LALFPGPWALGTGISEPHGPRSCVATPVPIGEATQHP

>gi568815596f:85654190_85864183|GENSCAN_predicted_CDS_2|834_bp
atggctacctgggccctcctgctccttgcagccatgctcctgggcaacccaggccttgag
gtcagtgtgagccccaagggcaagaacacttctggaagggagagtggatttggctgggcc
atctggatggaaggtctggtcttctctcgtctgagccctgagtactacgacctggcaaga
gcccacctgcgtgatgaggagaaatcctgcccgtgcctggcccaggagggcccccagggt
gacctgttgaccaaaacacaggagctgggccgtgactacaggacctgtctgacgatagtc
caaaaactgaagaagatggtggataagcccacccagagaagtgtttccaatgctgcgacc
cgggtgtgtaggacggggaggtcacgatggcgcgacgtctgcagaaatttcatgaggagg
tatcagtctagagttacccagggcctcgtggccggagaaactgcccagcagatctgtgag
gacctcaggttgtgtataccttctacaggcatttacagctacaaatttcccttttggcac
agcttaagctacaacccggccagagtggggtcaagtggggaccatggaggaggacatgag
atcctaacaggcgacctcaaactgctgtacaagcccagcaaccctgaccgctccccaacc
cacaaccagcaaaggagctcagatgtttggagattgccaatagaagtcaatgtggcagag
cttgctctgtttcctgggccgtgggctctgggaactggcatctcagagcctcatggcccg
agaagctgtgtagctacccctgttcctattggtgaagccacccagcacccttag

>gi568815596f:85654190_85864183|GENSCAN_predicted_peptide_3|84_aa
MPQTQKNCVTLMTTTDQESEDREKQMNPSSLAVFTCAHPTGIVDTEHSGILIQAVDNFME
FLKAFVTDTSFLELEMRERRDGAA

>gi568815596f:85654190_85864183|GENSCAN_predicted_CDS_3|255_bp
atgccacaaacccagaaaaactgtgtcacactaatgaccaccacagaccaggagagtgaa
gacagagagaagcaaatgaatccaagcagcctggcggtcttcacttgtgctcaccccaca
ggcattgtggacacagaacattcagggatcctcattcaagcagttgacaatttcatggag
ttcctcaaggcctttgtaactgacaccagttttctagaactggaaatgagagaaaggaga
gatggggctgcatga

>gi568815596f:85654190_85864183|GENSCAN_predicted_peptide_4|725_aa
MKHIPVLEDGPWKTVCVKELNGLKKLKRKGKEPARRANGYKTFRLDLEAPEPRAVATNGL
RDRTHRLQPVPVPVPVPVPVAPAVPPRGGTDTAGERGGSRAPEVSDARKRCFALGAVGPG
LPTPPPPPPPAPQSQAPGGPEAQPFREPGLRPRILLCAPPARPAPSAPPAPPAPPESTVR
PAPPTRPGESSYSSISHVIYNNHQDSSASPRKRPGEATAASSEIKALQQTRRLLANARER
TRVHTISAAFEALRKQVPCYSYGQKLSKLAILRIACNYILSLARLADLDYSADHSNLSFS
ECVQRCTRTLQAEGRAKKRKLLSTLYVPDTVQHFSSNPWSCTLSIGCSLQPIQKSSDVKV
EGVIPRNMHNMWSYNNANRHCSRPLPPPSTSTMCSELFSPEASPLPEARTLPSTVACAQE
APSKCLVPSLAQSNSSYCGHGPFELLASGRAVKPSAMTGQHRRMEADGKPQQLPAASPGP
ARPSQCPTLGRPPLSEPALSRLSPLYPGPFCLSCFPQCVDSSGSNICWALSGPNRPPISS
CVDSHYNEDNVSQLPMGLCMAVGLSSSQRVQAEEDVGQTLSSNTFNVINIHKYLLDPETH
SSRYWLVVGVVVSQPLEKIPQPPPTFVPSREHGHLICSPERCSCRMLDPQSLGLGVRQAW
VGTRLPTWQHYDCTVGKGLYFLICKMGVIMPKPPVPTPKRHDSVMEITWPLESRDLGVGP
DTAVP

>gi568815596f:85654190_85864183|GENSCAN_predicted_CDS_4|2178_bp
atgaagcacatcccggtcctcgaggacgggccgtggaagaccgtgtgcgtgaaggagctg
aacggccttaagaagctcaagcggaaaggcaaggagccggcgcggcgcgcgaacggctat
aaaactttccgactggacttggaagcgcccgagccccgcgccgtagccaccaacgggctg
cgggacaggacccatcggctgcagccggtcccggtaccggtgccggtgccagtcccagtg
gcgccggccgttcccccaagagggggcacggacacagccggggagcgcgggggctctcgg
gcgcccgaggtctccgacgcgcggaaacgctgcttcgccctaggcgcagtggggccagga
ctccccacgccgccgccgccgccgcctcctgcgccccagagccaggcacctgggggccca
gaggcacagcctttccgggagccgggtctgcgtcctcgcatcttgctgtgcgcaccgccc
gcgcgccccgcgccgtcagcacccccagcaccgccagcgcccccggagtccactgtgcgc
cctgcgcccccgacgcgccccggggaaagttcctactcgtcaatttcacacgtaatttac
aataaccaccaggattcctccgcgtcgcctaggaaacgaccgggcgaagcgactgccgcc
tcctccgagatcaaagccctgcagcagacccggaggctcctggcgaacgccagggagcgg
acgcgggtgcacaccatcagcgcagccttcgaggcgctcaggaagcaggtgccgtgctac
tcatatgggcagaagctgtccaaactggccatcctgaggatcgcctgtaactacatcctg
tccctggcgcggctggctgaccttgactacagtgccgaccacagcaacctcagcttctcc
gagtgtgtgcagcgctgcacccgcaccctgcaggccgagggacgtgccaagaagcgcaag
ctattgagtaccctctatgtacctgacacagtgcagcacttcagctcaaacccctggtcc
tgcacccttagcatagggtgcagcctgcagcccatccagaaatcctcggatgtcaaagta
gagggagtcataccaagaaacatgcataacatgtggtcatataataatgctaatcggcac
tgcagcagaccactgccaccaccaagcacatcaaccatgtgttctgagctcttcagtcct
gaggccagcccgctgcctgaagctcgcacactgcccagcacagtggcctgtgcccaggag
gcccccagcaagtgcctggtgccgtcccttgcccagagcaacagctcttattgcggccat
gggccttttgagctgctggcatctggaagagcagtgaagccaagtgcgatgaccggacag
catcgcaggatggaagcagatgggaagccgcagcagctgcctgcagcttcgcctgggcca
gctcgaccctcacaatgccccacgctggggaggccacccctctcagagccagccctctct
cggctctccccgctttatcctggcccattctgcctcagctgctttcctcagtgcgtggat
tccagtggcagcaacatctgctgggcactgtctggccctaatagaccaccaatttctagt
tgtgtggacagccactacaatgaagacaatgtatctcagcttcccatggggctctgtatg
gctgtgggactgagttctagtcaacgggtgcaagcagaagaggatgtggggcagaccctg
tcatcaaacacatttaatgtaattaatattcacaaatatctgctggaccctgaaacacac
tcctcccgttactggctggttgtgggtgtcgtggtgtcacagcccctggagaaaatcccc
caacccccaccaacctttgtcccctccagagagcatgggcaccttatctgcagcccagaa
agatgcagctgtcggatgctggatcctcagagcctgggcttgggagttaggcaggcctgg
gtgggaacccggctccccacttggcagcactatgactgtactgtgggcaagggcctctat
ttcctcatctgtaaaatgggcgtgatcatgcccaaacccccagtgcccacacccaagagg
cacgacagtgtcatggaaataacatggcccttggaatccagagatctgggtgtgggtcct
gatactgcagttccatga

>gi568815596f:85654190_85864183|GENSCAN_predicted_peptide_5|141_aa
MKLPAQCHQLPKGDTLVLLEMVHLLLREPFSNLGKLEFKHEDSEISQHSHLLNHFGAQQK
TWADPGCLDLNPKVRPQVLLTVGRGHLAASLPSSNGSSGGSNSSSSWGVSLQLQSEQQQL
TRLEDISTVFPGSCDVLCGGS

>gi568815596f:85654190_85864183|GENSCAN_predicted_CDS_5|426_bp
atgaaactgccagcccagtgtcaccagttacccaagggtgacaccctcgtcctgctggag
atggtgcatctgctgcttcgagagcccttttctaacctgggaaagcttgagtttaaacat
gaagatagtgaaataagtcagcactcccacctgctcaaccactttggtgctcaacagaag
acgtgggcagatcctggctgcctagatttgaaccccaaagtacggccacaggttctgcta
acagtggggaggggacatctggcagcatctctcccaagcagcaacggtagcagtggtggc
agcaacagcagcagcagctggggagtgtccctccaacttcagagtgagcagcagcagctg
accagattggaggacatttccactgtcttccctggcagctgtgatgtgttgtgcggtggc
agctga

>gi568815596f:85654190_85864183|GENSCAN_predicted_peptide_6|135_aa
MTFALLATLSWIPDPRRQKGLCFECYDLTPGPAYGEEEGDGKTFEWAGAKAALGLHKQLQ
EGKVEAGTSRTASLVGSRVFQQKADQQRRVVTFSNQPRPHAAASQTQYQQQSYGARHPGS
GSSVGHTKQRSREPE

>gi568815596f:85654190_85864183|GENSCAN_predicted_CDS_6|408_bp
atgacttttgctctcctggccactctgagctggatcccagaccccaggagacagaaggga
ctctgctttgaatgctatgacctgactcctggccctgcatatggtgaggaggagggagat
gggaagacgttcgaatgggctggggccaaggctgcactggggctgcacaagcagttgcag
gaagggaaagtggaggcagggacctccaggacagcttccctggttggttctcgagtcttt
cagcagaaggcagaccaacagagaagggttgtgaccttctccaaccagcccaggcctcac
gccgctgcatcgcagacccagtatcagcagcagagctacggagcacgtcatcctgggagt
ggatcctccgtgggtcacaccaagcagcgcagcagggaaccagaatga

>gi568815596f:85654190_85864183|GENSCAN_predicted_peptide_7|391_aa
XMPSEYTYVKLRSDCSRPSLQWYTRAQSKMRRPSLLLKDILKCTLLVFGVWILYILKLNY
TTEECDMKKMHYVDPDHVKRAQKYAQQVLQKECRPKFAKTSMALLFEHRYSVDLLPFVQK
APKDSEAESKYDPPFGFRKFSSKVQTLLELLPEHDLPEHLKAKTCRRCVVIGSGGILHGL
ELGHTLNQFDVVIRLNSAPVEGYSEHVGNKTTIRMTYPEGAPLSDLEYYSNDLFVAVLFK
SVDFNWLQAMVKKETLPFWVRLFFWKQVAEKIPLQPKHFRILNPVIIKETAFDILQYSEP
QSRFWGRDKNVPTIGVIAVVLATHLCDEVSLAGFGYDLNQPRTPLHYFDSQCMAAMNFQT
MHNVTTETKFLLKLVKEGVVKDLSGGIDREF

>gi568815596f:85654190_85864183|GENSCAN_predicted_CDS_7|1176_bp
ncaatgccaagtgagtacacctatgtgaaactgagaagtgattgctcgaggccttccctg
caatggtacacccgagctcaaagcaagatgagaaggcccagcttgttattaaaagacatc
ctcaaatgtacattgcttgtgtttggagtgtggatcctttatatcctcaagttaaattat
actactgaagaatgtgacatgaaaaaaatgcattatgtggaccctgaccatgtaaagaga
gctcagaaatatgctcagcaagtcttgcagaaggaatgtcgtcccaagtttgccaagaca
tcaatggcgctgttatttgagcacaggtatagcgtggacttactcccttttgtgcagaag
gcccccaaagacagtgaagctgagtccaagtacgatcctccttttgggttccggaagttc
tccagtaaagtccagaccctcttggaactcttgccagagcacgacctccctgaacacttg
aaagccaagacctgtcggcgctgtgtggttattggaagcggaggaatactgcacggatta
gaactgggccacaccctgaaccagttcgatgttgtgataaggttaaacagtgcaccagtt
gagggatattcagaacatgttggaaataaaactactataaggatgacttatccagagggc
gcaccactgtctgaccttgaatattattccaatgacttatttgttgctgttttatttaag
agtgttgatttcaactggcttcaagcaatggtaaaaaaggaaaccctgccattctgggta
cgactcttcttttggaagcaggtggcagaaaaaatcccactgcagccaaaacatttcagg
attttgaatccagttatcatcaaagagactgcctttgacatccttcagtactcagagcct
cagtcaaggttctggggccgagataagaacgtccccacaatcggtgtcattgccgttgtc
ttagccacacatctgtgcgatgaagtcagtttggcgggttttggatatgacctcaatcaa
cccagaacacctttgcactacttcgacagtcaatgcatggctgctatgaactttcagacc
atgcataatgtgacaacggaaaccaagttcctcttaaagctggtcaaagagggagtggtg
aaagatctcagtggaggcattgatcgtgaattttga