GENSCAN 1.0	Date run:  4-Nov-116	Time: 05:40:20

Sequence gi568815581r:46668323_46918597 : 250275 bp : 47.11% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   6092   6291  200  0  2  126   57   188 0.521  18.57
 1.02 Intr +  24581  24746  166  1  1   86   76   255 0.992  23.63
 1.03 Intr +  25525  25599   75  2  0   63   82    41 0.583   0.49
 1.04 Intr +  26153  26340  188  0  2   37   77   139 0.702   7.11
 1.05 Intr +  36437  36532   96  1  0   80   81   101 0.921   8.81
 1.06 Intr +  42641  42797  157  1  1   82  100   223 0.997  22.48
 1.07 Intr +  45531  45664  134  1  2   96   64   142 0.852  12.96
 1.08 Intr +  46957  47002   46  0  1   86   63   -16 0.685  -6.32
 1.09 Term +  49451  49758  308  0  2   -6   45   372 0.580  18.78
 1.10 PlyA +  52132  52137    6                               1.05

 2.02 PlyA -  53246  53241    6                               1.05
 2.01 Sngl -  53811  53260  552  0  0   68   41   521 0.997  39.52
 2.00 Prom -  59539  59500   40                              -6.26

 3.00 Prom +  62468  62507   40                              -6.06
 3.01 Init +  62563  62639   77  0  2   70   99    55 0.292   5.36
 3.02 Intr +  70335  70369   35  0  2  105   89    15 0.169   1.17
 3.03 Intr +  74101  74192   92  2  2   32   92    53 0.178  -0.19
 3.04 Intr +  81451  81585  135  0  0   58   83   206 0.984  17.86
 3.05 Intr +  83181  83294  114  2  0   71  110   118 0.998  12.94
 3.06 Term +  85370  85513  144  1  0  110   38    61 0.944   1.21
 3.07 PlyA +  85670  85675    6                               1.05

 4.14 PlyA -  87154  87149    6                               1.05
 4.13 Term - 100477  99998  480  1  0   92   49   758 0.993  67.10
 4.12 Intr - 101726 101461  266  0  2   94  101   408 0.999  39.93
 4.11 Intr - 105587 105346  242  1  2  115   79   394 0.875  38.39
 4.10 Intr - 114173 114095   79  0  1  127   49    27 0.001   1.31
 4.09 Intr - 132939 132892   48  1  0   68   94    30 0.029   0.25
 4.08 Intr - 136781 136733   49  2  1   47  101    44 0.071  -0.15
 4.07 Intr - 147617 147563   55  1  1  103   51    74 0.298   4.18
 4.06 Intr - 150483 150196  288  2  0   74   83   111 0.235   5.56
 4.05 Intr - 151681 151599   83  1  2  106   37    49 0.134   0.04
 4.04 Intr - 151989 151842  148  2  1  110   47    74 0.199   5.74
 4.03 Intr - 157402 157240  163  2  1   70   67   106 0.609   5.73
 4.02 Intr - 163240 163126  115  1  1  103   92    78 0.988   9.72
 4.01 Init - 174544 174509   36  1  0   73   40    79 0.476   1.61
 4.00 Prom - 176428 176389   40                              -4.16

 5.00 Prom + 181373 181412   40                              -4.96
 5.01 Init + 183317 183393   77  1  2   90   60   285 0.999  24.46
 5.02 Intr + 183722 183877  156  2  0   78   35   123 0.139   5.13
 5.03 Intr + 195612 195848  237  0  0   50   63   149 0.344   5.33
 5.04 Intr + 204195 204451  257  0  2  113   59   209 0.977  17.59
 5.05 Intr + 206779 207044  266  2  2   66  105   353 0.994  32.03
 5.06 Intr + 207923 208226  304  1  1  140   91   280 0.226  29.66
 5.07 Intr + 208946 209153  208  0  1    6  110    90 0.090   1.14
 5.08 Intr + 216202 216296   95  1  2   84   81    58 0.232   4.31
 5.09 Intr + 217571 217641   71  0  2   85   59    57 0.243   1.40
 5.10 Intr + 235214 235352  139  1  1  111   80    77 0.609   9.24
 5.11 Intr + 237086 237182   97  0  1   50   91    34 0.432  -1.03
 5.12 Intr + 238971 239120  150  0  0   50   66    88 0.356   2.08
 5.13 Intr + 239997 240101  105  0  0   53   86    57 0.202   1.33
 5.14 Term + 240295 240337   43  1  1   65   48    68 0.304  -2.87
 5.15 PlyA + 243563 243568    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581r:46668323_46918597|GENSCAN_predicted_peptide_1|456_aa
XCKHVKGILLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFAD
AEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKIDGVEQLNNIL
VIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKE
LAVETKNFSGAELEGLVRAAQSTAMNRHIKASTKVEVDMEKAESLQVTRGDFLASLENDI
KPAFGTNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSG
KTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKENLNRITGTSDFPRVGKELEQ
CQRQANKVTEITLNNFDKVLEHDGKLTELEQRSDQLLDMSSAFSKTTKTLAQKKCWENIH
CQIYLGLVVGGSLLIILIEQLAIFLPQSDTSNAPQT

>gi568815581r:46668323_46918597|GENSCAN_predicted_CDS_1|1371_bp
ngttgtaaacatgttaaaggcatcctgttatatggacccccaggttgtggtaagactctc
ttggctcgacagattggcaagatgttgaatgcaagagagcccaaagtggtcaatgggcca
gaaatccttaacaaatatgtgggagaatcagaggctaacattcgcaaactttttgctgat
gctgaagaggagcaaaggaggcttggtgctaacagtggtttgcacatcatcatctttgat
gaaattgatgccatctgcaagcagagagggagcatggctggtagcacgggagttcatgac
actgttgtcaaccagttgctgtccaaaattgatggcgtggagcagctaaacaacatccta
gtcattggaatgaccaatagaccagatctgatagatgaggctcttcttagacctggaaga
ctggaagttaaaatggagataggcttgccagatgagaaaggccgactacagattcttcac
atccacacagcaagaatgagagggcatcagttactctctgctgatgtagacattaaagaa
ctggccgtggagaccaagaatttcagtggtgctgaattggagggtctggtgcgagcagcc
cagtccactgctatgaatagacacataaaggccagtactaaagtggaagtggacatggag
aaagcagaaagcctgcaagtgacgagaggagacttccttgcttctttggagaatgatatc
aaaccagcctttggcacaaaccaagaagattatgcaagttacattatgaacggtatcatc
aaatggggtgacccagttactcgagttctagatgatggggagctgctggtgcagcagact
aagaacagtgaccgcacaccattggtcagcgtgcttctggaaggccctcctcacagtggg
aagactgctttagctgcaaaaattgcagaggaatccaacttcccgttcatcaagatctgt
tctcctgataaaatgattggcttttctgaaacagccaaatgtcaggccatgaagaaggaa
aatctgaatagaataactgggaccagtgatttccctagagtagggaaagagttggagcag
tgccagcggcaagcgaacaaggtgacggaaatcacgcttaacaactttgacaaggtcctg
gagcatgatggaaagctgaccgaactggagcagcgttcagaccaactcctggatatgagc
tcagccttcagcaagacaacaaagaccctggcccagaagaagtgctgggagaacatccat
tgccagatctacttggggctagtggtgggtggtagcctgctcatcatcctgattgagcag
ctggccatctttctccctcagagtgacaccagtaatgccccacagacctag

>gi568815581r:46668323_46918597|GENSCAN_predicted_peptide_2|183_aa
MARSRTSSSPAISQALLELEMNSDLKAQLRELNITAAKETEVGGGRKAIIIFVPVPQLKS
FQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKCPRSRTLTAVHDAFLE
DLVFPSEIVGKRIPVKLDSSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE
FQL

>gi568815581r:46668323_46918597|GENSCAN_predicted_CDS_2|552_bp
atggcgagaagccggacgagttcgagtccggccatctcccaggctcttctggagctggag
atgaactcggacctcaaggctcagctcagggagctgaatattacggcagccaaggaaact
gaagttggtggtggtcggaaagctatcataatctttgttcccgttcctcaactgaaatct
ttccagaaaatccaagtccggctagtacgcgaattggagaaaaagttcagtgggaagcat
gtcgtctttatcgctcagaggagaattctgcctaagccaactcgaaaaagccgtacaaaa
aataagcaaaagtgtcccaggagccgtactctgacagctgtgcacgatgccttccttgag
gacttggtcttcccaagcgaaattgtgggcaagagaatccccgtcaaactagatagcagc
cggctcataaaggttcatttggacaaagcacagcagaacaatgtggaacacaaggttgaa
actttttctggtgtctataagaagctcacgggcaaggatgttaattttgaattcccagag
tttcaattgtaa

>gi568815581r:46668323_46918597|GENSCAN_predicted_peptide_3|198_aa
MAIIKKSGNDKRWCRCGEIGTCMHCCGFAISCYLQNPSSMLALETSVKPNRLKSCPDEGE
LARNTVNIGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKD
KERTTIAQQVKGKKVWIGIKKLLMLIEMSLQVSDQVNASYACGIESESGALRPDLQRLTF
HRPLSLNPFMSNGFRAAE

>gi568815581r:46668323_46918597|GENSCAN_predicted_CDS_3|597_bp
atggctatcatcaaaaagtcaggtaatgacaagcgctggtgcagatgtggagaaattgga
acctgtatgcactgctgtggttttgctatcagctgttacttgcagaatccaagcagtatg
ctagccctggaaacatcagtaaagccaaaccgacttaagtcctgtcctgatgaaggagaa
ctagcaagaaatacagtaaatataggccgcaagcttcttatcattgggaccactagccgc
aaagatgtccttcaggagatggaaatgcttaacgctttcagcaccaccatccacgtgccc
aacattgccacaggagagcagctgttggaagctttggagcttttgggcaacttcaaggat
aaggaacgcaccacaattgcacagcaagtcaaagggaagaaggtctggataggaatcaag
aagttactaatgctgatcgagatgtccctacaggtcagtgatcaagttaatgcttcttat
gcatgtgggatagagagtgagagtggggcactcaggcctgatcttcagcgactgacattt
cataggcctctgagtttgaaccccttcatgtcaaatggatttcgtgcagctgagtga

>gi568815581r:46668323_46918597|GENSCAN_predicted_peptide_4|683_aa
MNVDIFQCDSEETLKKASDGPRTEKVTQDLAQPFWTTGRQLRFVLHLSLQRNIYVFGPLM
NDCPQQMASSLQAKTWAAFAHQCSAAKGQLHTELLHEDALKKWTSPAMGWERSRSHDKPR
RLSRPLVPPRPFPRAPCAGSSRVRRGLADQKGQQFPTQRSLLPTGSASFTPDRGCAESWC
LRPRALIGCSLTSSNPAAPRWAREGGGCGWRCASDKPESHFQSQVDFVPTIGGVAPPLHG
RGQTSSSAPLLMEPHLLGLLLGLLLGGTRVLAGYPIWWCWAQGCVAVNIFADIYLWWVRG
LTDFKNEATYLCAWPLPPCTRSSPNPNMEVSVEGGALLGPGTSWASVQYCPGASRSLALG
QQYTSLGSQPLLCGSIPGLVPKQLRFCRNYIEIMPSVAEGVKLGIQECQHQFRGRRWNCT
TIDDSLAIFGPVLDKATRESAFVHAIASAGVAFAVTRSCAEGTSTICGCDSHHKGPPGEG
WKWGGCSEDADFGVLVSREFADARENRPDARSAMNKHNNEAGRTTILDHMHLKCKCHGLS
GSCEVKTCWWAQPDFRAIGDFLKDKYDSASEMVVEKHRESRGWVETLRAKYSLFKPPTER
DLVYYENSPNFCEPNPETGSFGTRDRTCNVTSHGIDGCDLLCCGRGHNTRTEKRKEKCHC
IFHWCCYVSCQECIRIYDVHTCK

>gi568815581r:46668323_46918597|GENSCAN_predicted_CDS_4|2052_bp
atgaatgtggacatcttccagtgtgattcagaagagaccctgaagaaagcctctgatggg
cctagaacagagaaggtgacccaggaccttgcccagcctttctggacaactggaagacag
ttacgcttcgtcctccacctctccctccaacgaaacatttacgtatttggtcctctgatg
aatgactgtccccagcagatggcaagttccttgcaggccaaaacctgggctgcttttgct
catcagtgctcagctgccaaggggcagctgcacacagagttgctccatgaagatgcgttg
aagaaatggaccagtccagcaatgggctgggaacgcagcaggagccatgacaagcccagg
cggctctcccgacccttggtgcccccgaggccatttccccgcgctccctgtgccggcagc
agccgcgtgcggagagggctcgccgaccagaaggggcagcagttccctacacagcggtcc
ctgctccccaccggcagtgcttccttcaccccagaccggggctgcgcagagtcctggtgc
ctcaggccgcgggcgctgattggctgctcgctgacatcctcaaacccggctgctccgcgc
tgggctcgggaggggggcggctgcgggtggaggtgcgcttctgacaagcccgaaagtcat
ttccaatctcaagtggactttgttccaactattgggggcgtcgctccccctcttcatggt
cgcgggcaaacttcctcctcggcgcctcttctaatggagccccacctgctcgggctgctc
ctcggcctcctgctcggtggcaccagggtcctcgctggctacccaatttggtggtgctgg
gcccagggctgtgtggctgtgaatatctttgcagacatctacctgtggtgggttcgtggt
ctcactgacttcaagaatgaagccacgtacctttgcgcctggcccctgccgccctgcacc
cgctcctctcccaaccccaacatggaagtttccgtggagggtggagcccttctgggccca
ggaacaagttgggcctctgtccagtactgcccaggagccagcaggtccctggccctgggc
cagcagtacacatctctgggctcacagcccctgctctgcggctccatcccaggcctggtc
cccaagcaactgcgcttctgccgcaattacatcgagatcatgcccagcgtggccgagggc
gtgaagctgggcatccaggagtgccagcaccagttccggggccgccgctggaactgcacc
accatagatgacagcctggccatctttgggcccgtcctcgacaaagccacccgcgagtcg
gccttcgttcacgccatcgcctcggccggcgtggccttcgccgtcacccgctcctgcgcc
gagggcacctccaccatttgcggctgtgactcgcatcataaggggccgcctggcgaaggc
tggaagtggggcggctgcagcgaggacgctgacttcggcgtgttagtgtccagggagttc
gcggatgcgcgcgagaacaggccggacgcgcgctcggccatgaacaagcacaacaacgag
gcgggccgcacgactatcctggaccacatgcacctcaaatgcaagtgccacgggctgtcg
ggcagctgtgaggtgaagacctgctggtgggcgcagcctgacttccgtgccatcggtgac
ttcctcaaggacaagtatgacagcgcctcggagatggtagtagagaagcaccgtgagtcc
cgaggctgggtggagaccctccgggccaagtactcgctcttcaagccacccacggagagg
gacctggtctactacgagaactcccccaacttttgtgagcccaacccagagacgggttcc
tttggcacaagggaccggacttgcaatgtcacctcccacggcatcgatggctgcgatctg
ctctgctgtggccggggccacaacacgaggacggagaagcggaaggaaaaatgccactgc
atcttccactggtgctgctacgtcagctgccaggagtgtattcgcatctacgacgtgcac
acctgcaagtag

>gi568815581r:46668323_46918597|GENSCAN_predicted_peptide_5|734_aa
MRPPPALALAGLCLLALPAAAASYFGRQSRSLMPSRDPHAGALSAAILASGEPSLPRTPS
PPSAFALRSGDREGWVDGWAKGVGHPWGLQENKWNLQHGTSLPRACANNGTVLIIEGVTH
KAFPRGLALPGPKPSLSLPVRGKRVIGAQGAFKNLSSLTGREVLTPFPGLGTAAAPAQGG
AHLKQCDLLKLSRRQKQLCRREPGLAETLRDAAHLGLLECQFQFRHERWNCSLEGRMGLL
KRGFKETAFLYAVSSAALTHTLARACSAGRMERCTCDDSPGLESRQAWQWGVCGDNLKYS
TKFLSNFLGSKRGNKDLRARADAHNTHVGIKAVKSGLRTTCKCHGVSGSCAVRTCWKQLS
PFRETGQVLKLRYDSAVKVSSATNEALGRLELWAPARQGSLTKGLAPRSGDLVYMEDSPS
FCRPSKYSPGTADGEKAQVVEAIRSEKGELSVLEWTRVRSVPWSPVSLIWLFKYASAEAS
FLSRELGYAHSPSRAQNYHQCSLMTEAQGLVNEVAALPVLTTATVVVLRRLHTESLAAST
TRTKLCRSLNLELLQDEVGLPGTCILIDAVTLTGKQLEGKNHGFHLSGFQYPTPNLAYYR
CSTEFVVPFKDDAWNNPLPARVDSSKKTLFHPSAESRGFLWRKKKRKCHALDPPGKERLT
VAVSTRGTWGQLTLVLQTQVLGSVGRGVLSPYASGSWALPFQSCKMIAINAACLLEALKI
GDVAAIWLPMKEPY

>gi568815581r:46668323_46918597|GENSCAN_predicted_CDS_5|2205_bp
atgcgccccccgcccgcgctggccctggccgggctctgcctgctggcgctgcccgccgcc
gccgcctcctacttcgggcgtcagtcccgctctctgatgccctctcgggatcctcacgcc
ggtgccctgtctgccgccatcctggcctccggcgagccgtccttgcctcggactccttcc
ccaccctccgccttcgccctgcggagcggagaccgagagggctgggtggatggctgggcg
aagggtgtgggccatccgtggggcctgcaggagaacaagtggaatctgcagcatgggaca
tctctgcctagagcctgtgcaaacaatggcactgtcctcatcattgagggggtcacgcac
aaggcattccccagaggcctggcccttccagggcccaagcccagcctgagcctgcctgtg
cgtgggaagagggtgatcggagcccagggtgcattcaagaacctgtcaagcctgaccggg
cgggaagtcctgacgcccttcccaggattgggcactgcggcagccccggcacagggcggg
gcccacctgaagcagtgtgacctgctgaagctgtcccggcggcagaagcagctctgccgg
agggagcccggcctggctgagaccctgagggatgctgcgcacctcggcctgcttgagtgc
cagtttcagttccggcatgagcgctggaactgtagcctggagggcaggatgggcctgctc
aagagaggcttcaaagagacagctttcctgtacgcggtgtcctctgccgccctcacccac
accctggcccgggcctgcagcgctgggcgcatggagcgctgcacctgtgatgactctccg
gggctggagagccggcaggcctggcagtggggcgtgtgcggtgacaacctcaagtacagc
accaagtttctgagcaacttcctggggtccaagagaggaaacaaggacctgcgggcacgg
gcagacgcccacaatacccacgtgggcatcaaggctgtgaagagtggcctcaggaccacg
tgtaagtgccatggcgtatcaggctcctgtgccgtgcgcacctgctggaagcagctctcc
ccgttccgtgagacgggccaggtgctgaaactgcgctatgactcggctgtcaaggtgtcc
agtgccaccaatgaggccttgggccgcctagagctgtgggcccctgccaggcagggcagc
ctcaccaaaggcctggccccaaggtctggggacctggtgtacatggaggactcacccagc
ttctgccggcccagcaagtactcacctggcacagcagatggggagaaagcacaggtggta
gaagccatccgttcagagaaaggagagctttctgtgcttgagtggacccgagtgagatct
gtgccctggagccctgtgtccttgatttggcttttcaaatatgcctccgctgaggcctca
ttcttgtctcgagagctgggttatgcacactcacccagccgtgctcaaaactaccaccag
tgcagcctgatgacagaggcccagggtttggtaaatgaagttgctgctctgccagtgctg
acaacagccacagtagttgttttgcgcaggcttcatacagaatccctggctgcctcaacc
acaagaacaaagctgtgcagaagcctgaacctggagcttctgcaagatgaggtagggctt
ccaggtacttgtatcctgattgatgctgtcactctcactggaaaacaattggaaggtaag
aaccatggcttccacctctctggattccagtaccctacaccaaatctggcttattatagg
tgctcaacagaatttgtagttccctttaaagatgatgcttggaataacccacttccagca
agagtggacagcagcaagaagactttgtttcatccttcagctgagtcgcggggcttcctt
tggaggaagaagaagcggaaatgtcatgctctggacccacctggtaaagagaggttgacc
gtggcagtgagtactcggggcacctggggccagctgacccttgtgcttcagacacaggtg
ttgggctcggtgggaagaggggtcctctcaccctatgcctcagggtcctgggcgcttccc
tttcaaagctgcaaaatgatcgccattaatgcagcttgtctcctggaggcgctgaaaata
ggagatgtggccgccatctggctgccaatgaaagaaccatattga