Result of FASTA (omim) for pF1KB7173
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7173, 530 aa
  1>>>pF1KB7173 530 - 530 aa - 530 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.7977+/-0.000476; mu= -22.0061+/- 0.030
 mean_var=477.6344+/-98.408, 0's: 0 Z-trim(122.0): 31  B-trim: 1344 in 1/58
 Lambda= 0.058685
 statistics sampled from 39329 (39366) to 39329 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.462), width:  16
 Scan time: 12.520

The best scores are:                                      opt bits E(85289)
NP_001166214 (OMIM: 300217) retinoic acid-induced  ( 530) 3542 314.5 5.2e-85
NP_001166210 (OMIM: 300217) retinoic acid-induced  ( 530) 3542 314.5 5.2e-85
NP_068557 (OMIM: 300217) retinoic acid-induced pro ( 530) 3542 314.5 5.2e-85
XP_006724522 (OMIM: 300217) PREDICTED: retinoic ac ( 530) 3538 314.1 6.6e-85
XP_011543742 (OMIM: 300217) PREDICTED: retinoic ac ( 530) 3538 314.1 6.6e-85
XP_011543741 (OMIM: 300217) PREDICTED: retinoic ac ( 530) 3538 314.1 6.6e-85
XP_011543743 (OMIM: 300217) PREDICTED: retinoic ac ( 530) 3538 314.1 6.6e-85
XP_006724523 (OMIM: 300217) PREDICTED: retinoic ac ( 530) 3538 314.1 6.6e-85
NP_001166203 (OMIM: 300217) retinoic acid-induced  ( 480) 2926 262.3 2.4e-69


>>NP_001166214 (OMIM: 300217) retinoic acid-induced prot  (530 aa)
 initn: 3542 init1: 3542 opt: 3542  Z-score: 1647.2  bits: 314.5 E(85289): 5.2e-85
Smith-Waterman score: 3542; 100.0% identity (100.0% similar) in 530 aa overlap (1-530:1-530)

               10        20        30        40        50        60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
              430       440       450       460       470       480

              490       500       510       520       530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
              490       500       510       520       530

>>NP_001166210 (OMIM: 300217) retinoic acid-induced prot  (530 aa)
 initn: 3542 init1: 3542 opt: 3542  Z-score: 1647.2  bits: 314.5 E(85289): 5.2e-85
Smith-Waterman score: 3542; 100.0% identity (100.0% similar) in 530 aa overlap (1-530:1-530)

               10        20        30        40        50        60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
              430       440       450       460       470       480

              490       500       510       520       530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
              490       500       510       520       530

>>NP_068557 (OMIM: 300217) retinoic acid-induced protein  (530 aa)
 initn: 3542 init1: 3542 opt: 3542  Z-score: 1647.2  bits: 314.5 E(85289): 5.2e-85
Smith-Waterman score: 3542; 100.0% identity (100.0% similar) in 530 aa overlap (1-530:1-530)

               10        20        30        40        50        60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
              430       440       450       460       470       480

              490       500       510       520       530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
              490       500       510       520       530

>>XP_006724522 (OMIM: 300217) PREDICTED: retinoic acid-i  (530 aa)
 initn: 3538 init1: 3538 opt: 3538  Z-score: 1645.4  bits: 314.1 E(85289): 6.6e-85
Smith-Waterman score: 3538; 99.8% identity (100.0% similar) in 530 aa overlap (1-530:1-530)

               10        20        30        40        50        60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PVPVPIPIPIPMPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
              430       440       450       460       470       480

              490       500       510       520       530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
              490       500       510       520       530

>>XP_011543742 (OMIM: 300217) PREDICTED: retinoic acid-i  (530 aa)
 initn: 3538 init1: 3538 opt: 3538  Z-score: 1645.4  bits: 314.1 E(85289): 6.6e-85
Smith-Waterman score: 3538; 99.8% identity (100.0% similar) in 530 aa overlap (1-530:1-530)

               10        20        30        40        50        60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVPVPIPIPIPMPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
              430       440       450       460       470       480

              490       500       510       520       530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
              490       500       510       520       530

>>XP_011543741 (OMIM: 300217) PREDICTED: retinoic acid-i  (530 aa)
 initn: 3538 init1: 3538 opt: 3538  Z-score: 1645.4  bits: 314.1 E(85289): 6.6e-85
Smith-Waterman score: 3538; 99.8% identity (100.0% similar) in 530 aa overlap (1-530:1-530)

               10        20        30        40        50        60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVPVPIPIPIPMPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
              430       440       450       460       470       480

              490       500       510       520       530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
              490       500       510       520       530

>>XP_011543743 (OMIM: 300217) PREDICTED: retinoic acid-i  (530 aa)
 initn: 3538 init1: 3538 opt: 3538  Z-score: 1645.4  bits: 314.1 E(85289): 6.6e-85
Smith-Waterman score: 3538; 99.8% identity (100.0% similar) in 530 aa overlap (1-530:1-530)

               10        20        30        40        50        60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVPVPIPIPIPMPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
              430       440       450       460       470       480

              490       500       510       520       530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
              490       500       510       520       530

>>XP_006724523 (OMIM: 300217) PREDICTED: retinoic acid-i  (530 aa)
 initn: 3538 init1: 3538 opt: 3538  Z-score: 1645.4  bits: 314.1 E(85289): 6.6e-85
Smith-Waterman score: 3538; 99.8% identity (100.0% similar) in 530 aa overlap (1-530:1-530)

               10        20        30        40        50        60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PVPVPIPIPIPMPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
              430       440       450       460       470       480

              490       500       510       520       530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
              490       500       510       520       530

>>NP_001166203 (OMIM: 300217) retinoic acid-induced prot  (480 aa)
 initn: 2926 init1: 2926 opt: 2926  Z-score: 1366.0  bits: 262.3 E(85289): 2.4e-69
Smith-Waterman score: 3109; 90.6% identity (90.6% similar) in 530 aa overlap (1-530:1-480)

               10        20        30        40        50        60
pF1KB7 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLVKKALVTVPAPSILN
       ::::::::::::::::::::::::::::::::::::::::::::::              
NP_001 MDDLQSQNLSMDMTDSPPALANNRLENGMAQLITTEAWNINSTDLV--------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KB7 PPAESQSGMALKVAATVLQPLCLGESPVVMPIHMQVEGSSAPELNPNGNATYVMTTQGPV
                                           ::::::::::::::::::::::::
NP_001 ------------------------------------EGSSAPELNPNGNATYVMTTQGPV
                                             50        60        70

              130       140       150       160       170       180
pF1KB7 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLPVVLEQHVFQHLNSPLVLPQEAPCSSSTIHNNLFQGAEDPEAQPQLLDLRIPSQPQEP
               80        90       100       110       120       130

              190       200       210       220       230       240
pF1KB7 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLPFEAVLQNLFPSQGTLGPPPCQPPPGYAPVPPQPFSSPLSPLVPPATLLVPYPVIVPL
              140       150       160       170       180       190

              250       260       270       280       290       300
pF1KB7 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVPVPIPIPIPVPQSSESKFSSSFPKPPSSFGLHPFKGTQTPLEKDELKPFDILQPKEYF
              200       210       220       230       240       250

              310       320       330       340       350       360
pF1KB7 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLSRHTVIKMGSENEALDLSMKSVPWLKAGEVSPPIFQEDAALDLSVAAHRKSEPPPETL
              260       270       280       290       300       310

              370       380       390       400       410       420
pF1KB7 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YDSGASVDSSGHTVMEKLPSGMEISFAPATSHEAPAMMDSHISSSDAATEMLSQPNHPSG
              320       330       340       350       360       370

              430       440       450       460       470       480
pF1KB7 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EVKAENNIEMVGESQAAKVIVSVEDAVPTIFCGKIKGLSGVSTKNFSFKREDSVLQGYDI
              380       390       400       410       420       430

              490       500       510       520       530
pF1KB7 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSQGEESMGNAEPLRKPIKNRSIKLKKVNSQEIHMLPIKKQRLATFFPRK
              440       450       460       470       480




530 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:36:57 2016 done: Fri Nov  4 05:36:58 2016
 Total Scan time: 12.520 Total Display time:  0.120

Function used was FASTA [36.3.4 Apr, 2011]
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