GENSCAN 1.0	Date run:  4-Nov-116	Time: 04:54:08

Sequence gi568815597f:20090562_20291401 : 200840 bp : 47.87% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.08 PlyA -   1100   1095    6                               1.05
 1.07 Term -   2729   2552  178  1  1   23   36   280 0.979  13.46
 1.06 Intr -  17142  16976  167  0  2   81  103    84 0.708   7.96
 1.05 Intr -  23049  22914  136  2  1   78   22    85 0.372   1.47
 1.04 Intr -  23698  23560  139  2  1   94  -17   202 0.554   9.82
 1.03 Intr -  25052  24946  107  1  2   94   68   127 0.995  11.16
 1.02 Intr -  25916  25772  145  0  1   77   53   150 0.988   9.74
 1.01 Init -  28937  28898   40  2  1   82  105    84 0.766   7.98
 1.00 Prom -  32076  32037   40                              -3.66

 2.00 Prom +  32659  32698   40                              -4.76
 2.01 Init +  35556  35569   14  2  2   72  115     8 0.145   1.52
 2.02 Intr +  49605  49657   53  0  2  114  101    89 0.816  11.35
 2.03 Intr +  52885  53029  145  2  1   82   82   231 0.495  21.24
 2.04 Intr +  54019  54128  110  1  2  120   73   193 0.999  20.93
 2.05 Intr +  57629  57795  167  0  2   94   26   274 0.979  21.48
 2.06 Intr +  59232  59416  185  2  2   98   11    82 0.032   0.09
 2.07 Intr +  65011  65293  283  1  1   88   49   162 0.067   9.72
 2.08 Intr +  66394  67075  682  0  1   44   77   346 0.546  20.26
 2.09 Intr +  67546  67815  270  2  0   39  116   122 0.276   7.61
 2.10 Term +  69069  69313  245  1  2  107   42    76 0.245   0.96
 2.11 PlyA +  69985  69990    6                               1.05

 3.04 PlyA -  72517  72512    6                               1.05
 3.03 Term -  73596  73430  167  1  2  110   50   148 0.857  11.28
 3.02 Intr -  82336  82233  104  0  2    5   59   177 0.694   6.32
 3.01 Init -  84633  84446  188  0  2   74   94   159 0.483  11.79
 3.00 Prom -  85302  85263   40                              -7.46

 4.00 Prom +  85520  85559   40                             -10.55
 4.01 Init +  86193  86271   79  2  1   70   50    76 0.422   3.22
 4.02 Intr +  88391  88449   59  0  2   54   86   103 0.351   5.30
 4.03 Intr +  90966  91157  192  2  0   15  121    65 0.408   2.19
 4.04 Intr +  91425  91517   93  2  0   69  113    64 0.983   7.16
 4.05 Intr +  92623  92686   64  0  1   52   94    94 0.920   4.69
 4.06 Term +  95471  95592  122  0  2   76   43    63 0.804  -0.76
 4.07 PlyA +  99825  99830    6                               1.05

 5.00 Prom +  99844  99883   40                              -8.56
 5.01 Sngl + 100001 100843  843  1  0   84   47   616 0.946  52.86
 5.02 PlyA + 102666 102671    6                               1.05

 6.03 PlyA - 104534 104529    6                               1.05
 6.02 Term - 113303 113172  132  2  0   85   47    63 0.575  -0.01
 6.01 Init - 113470 113417   54  1  0  125   94    23 0.647   6.04
 6.00 Prom - 130940 130901   40                              -0.86

 7.00 Prom + 146797 146836   40                              -4.56
 7.01 Init + 150021 150126  106  2  1   61  111    31 0.116   3.08
 7.02 Intr + 167660 167715   56  0  2  120   59    40 0.436   3.00
 7.03 Term + 170103 170210  108  2  0  114   45    25 0.207  -0.69
 7.04 PlyA + 174609 174614    6                               1.05

 8.03 PlyA - 174747 174742    6                               1.05
 8.02 Term - 185007 184893  115  2  1  121   47    34 0.879   0.64
 8.01 Init - 185521 185436   86  1  2   76  107    54 0.437   6.48

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  60513  60617  105  2  0  111   52    62 0.917   3.31
S.002 Init + 108422 108520   99  1  0   80   95    52 0.811   5.36


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:20090562_20291401|GENSCAN_predicted_peptide_1|303_aa
MELALLCGLVVMAGVIPIQGGILNLNKMVKQVTGKMPILSYWPYGCHCGLGGRGQPKDAT
DWCCQTHDCCYDHLKTQGCSIYKDYYRYNFSQGNIHCSDKGSWCEQQLCACDKEVAFCLK
RNLDTYQKRLRFYWRPHCRGQTPGQALKSLQVEAMPVLNSVASLVPKATPEPRRSSINPS
WVKPRQSRQEAIEVGSKCILLVGCLCWSPFQDPGLGWGERKPKLSLFPPQGFSPEMMQQL
SLALRLGDKSKIPSEEEEGEGEGRGRRGGGREEEEEEEEEEEEEEEEEEEEEYPYTSYLI
SPP

>gi568815597f:20090562_20291401|GENSCAN_predicted_CDS_1|912_bp
atggaacttgcactgctgtgtgggctggtggtgatggctggtgtgattccaatccagggc
gggatcctgaacctgaacaagatggtcaagcaagtgactgggaaaatgcccatcctctcc
tactggccctacggctgtcactgcggactaggtggcagaggccaacccaaagatgccacg
gactggtgctgccagacccatgactgctgctatgaccacctgaagacccaggggtgcagc
atctacaaggactattacagatacaacttttcccaggggaacatccactgctctgacaag
ggaagctggtgtgagcagcagctgtgtgcctgtgacaaggaggtggccttctgcctgaag
cgcaacctggacacctaccagaagcgactgcgtttctactggcggccccactgccggggg
cagacccctgggcaagctctgaagtccctgcaggtggaggccatgcctgtcttaaactca
gttgcatccctggtgcccaaagcaacaccagaaccaagaaggagctccataaatccttct
tgggtgaagcctagacaaagccgccaggaggccattgaagtggggtcaaagtgcattctg
ctcgtgggctgcctctgctggagccccttccaggatccagggctaggctggggtgagagg
aagccaaagctgtccctgttccctcctcaaggattcagccctgagatgatgcagcagctg
tcactggctctgcgcctgggtgacaagagcaaaattccatctgaagaagaagaaggagaa
ggagaaggaagaggaagaagaggaggaggaagggaggaagaagaggaggaggaagaggag
gaagaagaggaggaggaagaagaagaagaagaagaatatccatacacctcctacctcatc
agcccaccttag

>gi568815597f:20090562_20291401|GENSCAN_predicted_peptide_2|717_aa
MTGTWSSLGMKKFFTVAILAGSVLSTAHGSLLNLKAMVEAVTGRSAILSFVGYGCYCGLG
GRGQPKDEVDWCCHAHDCCYQELFDQGCHPYVDHYDHTIENNTEIVCSDLNKTECDKQTC
MCDKNMVLCLMNQTYREEYRGFLNVYCQGPTPNCSIYEPPPEEVHLTFLLTCPSLNSGSA
ASTEPAPPARKPLKPPSARTQQPPASSPGSAPGAPLSLGRESREGKNNTPSYTGKPQAII
DLLQTIIQTHNPTWADCHQVLMYLFNTDERRRVLQAATKWLEEHVPADYQNPQEYVRIQL
PGTDPQWDPDERQYAKAKPPGTKDYRLIQDLHLVNQATVTLHPTVPNPYTLLWLLPAEDS
WFTYLGLKDAFFSIRLAPESQKLFAFQWEDPGSGVTTQYTWTQLPQGFKNSTTIFGEALA
RDLQKFPTRDLGCVLLQYVDDLLLGHLMAVGCAKGMDTLLWHLEDCGYKVSKKKAQICQQ
EVRYLGFTIQQGERSLGSERMQVICNLPEPKTKRQVREFLGAVGFCRLWIPNFAVLAKPL
YEVIKGVSESPVERNYVEVLDTVYSSRPDLQDHPWTSVDWELYMDRSSFVNPQGERCAGY
AVVTLDAVTEAKSLPQDTSAQKVKLIALIWALELSEGDRVWITDWNIASLQPRWRGPQTI
VLTTPTAIKVEGIPAWIHHSHVKPKASETWEVRPSLDNPCKMTLKKMTSPAPVTPGS

>gi568815597f:20090562_20291401|GENSCAN_predicted_CDS_2|2154_bp
atgactggcacatggtctagcctgggtatgaagaagttcttcaccgtggccatccttgct
ggcagcgttctgtccacagctcacggcagcctgctcaacctgaaggccatggtggaggcc
gtcacagggaggagcgccatcctgtccttcgtgggctacggttgctactgtgggctgggg
ggccgtggccagcccaaggatgaggtggactggtgctgccacgcccacgactgctgctac
caggaactctttgaccaaggctgtcacccctatgtggaccactatgatcacaccatcgag
aacaacactgagatagtctgcagtgacctcaacaagacagagtgtgacaagcagacatgc
atgtgtgacaagaacatggttctgtgcctcatgaaccagacgtaccgagaggagtaccgt
ggcttcctcaatgtctactgccagggccccacgcccaactgcagcatctatgaaccgccc
cctgaggaggtgcaccttaccttcctccttacctgcccgagcctcaactcagggtcagca
gcctccacggagccagccccacctgcccgaaaaccactgaagccaccctccgcccggact
caacagccgccagcaagctcgcctggcagtgcccctggagcaccattgtcgctggggagg
gagagccgggaagggaagaacaataccccatcctataccggaaagcctcaagctataatt
gatttgctccaaactataatccagacccacaaccccacctgggctgattgccaccaggtg
ctcatgtacctctttaacacagatgaaaggaggagagtgctccaagcagcaactaagtgg
ctggaagaacatgttcctgctgattaccaaaacccccaagagtatgtgaggatccaatta
ccaggaacagacccccagtgggacccagatgaaagacagtatgcaaaggctaaaccgcca
gggaccaaggactacaggctgatacaggacttgcacttggtcaatcaagctacggtgact
ttacatccaacagtacctaacccatacacattgttgtggttgctgccagctgaggacagc
tggttcacctacctgggcctgaaggacgctttctttagcatcagactagcccctgagagc
cagaaactgtttgcctttcagtgggaggatccagggtcaggtgtcaccactcagtacact
tggacccagcttccccaagggttcaagaactccaccaccatcttcggggaggccctggct
cgagacctgcaaaagtttcccaccagagacctaggctgcgtgttgctccagtatgtcgat
gacctcctgctgggacacctcatggcagttgggtgtgccaagggaatggataccctgctc
tggcacctggaggactgtgggtataaggtatccaagaagaaagctcagatatgtcaacag
gaggtacgttacttgggatttactatccaacagggggagcgcagcctgggatcagaaaga
atgcaggtcatttgcaacctaccggagcctaagaccaaaaggcaggtgagagaattctta
ggagctgtggggttctgcaggttatggatcccaaactttgcagtactggccaaacctctg
tacgaagtcataaagggagtgtcagagagcccagtcgaacgtaactatgtagaggtgttg
gacacagtttattctagcaggcctgacctccaagaccatccttggacatcagtagactgg
gagctgtacatggacaggagcagcttcgtcaacccacaaggagagaggtgtgcaggatat
gcagtggtaaccctggatgctgtcactgaagccaaatcattgccccaggatacttcagcc
caaaaggtcaaactcattgctttaatttgggccttagagctaagtgaaggtgatcgggta
tggatcacggattggaacatagcctccttgcagccacggtggagaggaccccagaccatc
gtcttgaccactcccacagccataaaggtagaaggaatcccagcctggattcaccacagc
catgtaaaacctaaagcatctgagacctgggaggtgagaccaagcttggacaacccatgc
aagatgactttgaagaagatgacaagccctgctccagtcacacctggaagctga

>gi568815597f:20090562_20291401|GENSCAN_predicted_peptide_3|152_aa
MLIATSFFLFFSSVVAAPTHSSFWQFQRRVKHITGRSAFFSYYGYGCYCGLGDKGIPVDD
TDRHSPSSPSPYEKLKEFSCQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKACECDKQ
SVHCFKESLPTYEKNFKQFSSQPRCGRHKPWC

>gi568815597f:20090562_20291401|GENSCAN_predicted_CDS_3|459_bp
atgctcattgcaacttccttcttcctttttttctcatcggtggtggcagcccccacccac
agcagtttctggcagtttcagaggagggtcaaacacatcacggggcgaagtgccttcttc
tcatattacggatatggctgctactgtgggcttggggataaagggatccccgtggatgac
actgacaggcacagcccctcatctccctctccctacgagaagctgaaggagttcagctgc
cagcctgtgttgaacagctaccagttccacatcgtcaatggcgcagtggtttgtggatgc
acccttggtcctggtgccagctgccactgcaggctgaaggcctgtgagtgtgacaagcaa
tccgtgcactgcttcaaagagagcctgcccacctatgagaaaaacttcaagcagttctcc
agccagcccaggtgtggcagacataagccctggtgctag

>gi568815597f:20090562_20291401|GENSCAN_predicted_peptide_4|202_aa
MDLDKPPLNESSKRVYQSPVDPKLFPRLGYQLLLTLSLTENHSLLQLSCFRAYPKHHREG
KTQNSPSSEAGITTLLDSCFRCSSNKLLSFISQAQQPDRNGVRAASLNRKRGGDNDSGPP
QNASKIPQAPEGENTWSTVAKPHNNPVLIITILEMRKLTSSEGRFRSRRKHVAPHPAALP
GRPGLFTSRTEPGRRRRMERNG

>gi568815597f:20090562_20291401|GENSCAN_predicted_CDS_4|609_bp
atggatctggacaaacctccactcaacgaatccagcaaaagagtctatcagtctccagta
gaccccaaactgtttcccaggctggggtaccagctgctgctgacgctgtccctcactgag
aaccactctctgctgcagctctcctgcttccgtgcctatccaaaacaccaccgagaaggc
aaaacccaaaacagcccaagcagcgaagcaggtatcacaacactcttagactcttgtttt
agatgcagttctaacaagctgctcagcttcatttctcaggcccagcagccggacaggaat
ggagtcagagcagcttctcttaataggaagagaggtggagacaatgattctggcccccca
cagaatgccagcaagattccacaagctcctgaaggtgaaaatacttggtcaacagtagcc
aagccgcacaacaatcctgtgcttatcatcaccattctagagatgcggaaactgacatcc
agcgaaggccggttccggtcacgccggaagcacgtggccccccaccctgcggcgttgccc
gggagaccagggttgtttaccagcaggacagagcccgggcgcaggcggcggatggagcgg
aacggctag

>gi568815597f:20090562_20291401|GENSCAN_predicted_peptide_5|280_aa
MATEAPVNIAPPECSTVVSTAVDSLIWQPNSLNMHMIRPKSAKGRTRPSLQKSQGVEVCA
HHIPSPPPAIPYELPSSQKPGACAPKSPNQGASDEIPELQQQVPTGASSSLNKYPVLPSI
NRKNLEEEAVETVAKKASSLQLSSIRALYQDETGTMKTSEEDSRARACAVERKFIVRTKK
QGSSRAGNLEEPSDQEPRLLLAVRSPTGQRFVRHFRPTDDLQTIVAVAEQKNKTSYRHCS
IETMEVPRRRFSDLTKSLQECRIPHKSVLGISLEDGEGWP

>gi568815597f:20090562_20291401|GENSCAN_predicted_CDS_5|843_bp
atggccacagaagcccctgtgaatatagcaccacctgagtgtagcactgttgtcagcaca
gcagttgacagcctcatttggcagccaaactcactaaatatgcacatgataaggcccaag
tccgccaagggacggacaagaccgagtctgcagaaatcccagggcgtggaggtgtgcgct
catcatataccatctccgcctccagccattccctatgagttgccaagcagccaaaaacca
ggagcctgtgcacccaaatctccaaaccagggagcttctgatgagatccctgagctgcag
cagcaagtacccactggggcttcctcttctctcaataagtatccagtccttccttccatc
aacagaaagaacctggaggaggaggctgtggaaaccgttgccaaaaaggccagctcactg
caactgagcagtatccgggctctttaccaagacgagacgggcaccatgaagacaagtgaa
gaagattccagagctcgagcttgtgccgtggagaggaaattcatcgtccgaaccaagaaa
cagggctcttccagggctggaaatctggaggaaccatcggaccaagaaccaaggttgctg
cttgctgttagatcaccaacaggccaaaggtttgtacgccatttccggccaacagatgat
ttgcaaaccattgttgctgtggccgaacagaaaaacaaaacctcctaccgacactgcagc
attgaaacaatggaggtgcccaggaggcgattttctgacctcaccaaatctctgcaagag
tgcagaatcccccacaagtctgtgctgggcatctcactggaagatggggaagggtggccc
tga

>gi568815597f:20090562_20291401|GENSCAN_predicted_peptide_6|61_aa
MAKLLFLSESHFLLCRMELEIPPRFHRRNGTPGGHIGSSLGTFTVWTVQLRHRKNEALGK
T

>gi568815597f:20090562_20291401|GENSCAN_predicted_CDS_6|186_bp
atggccaagttgctcttcctctctgagtcccatttcctcctctgtagaatggagctagaa
attccccccaggttccaccgaagaaacggcaccccaggtggccacataggaagttctctg
ggcactttcactgtctggacagtgcagcttcggcacagaaagaatgaggccttgggcaaa
acatag

>gi568815597f:20090562_20291401|GENSCAN_predicted_peptide_7|89_aa
MSDRRSQDDAWVPGFNHSMKKGNTGGRAGLERFISDQVPGFSGLGLVSSTPVLRSPLGTS
YWKPKPRTDEDGVCSGRPLGTQSKSENSR

>gi568815597f:20090562_20291401|GENSCAN_predicted_CDS_7|270_bp
atgagcgacaggagatcacaggatgatgcctgggtccctggtttcaaccactccatgaag
aagggcaacactggaggtagagcaggcttggagagatttatttcagaccaagttcctggc
ttctccggcctggggttggtgtcctcaacaccagtgctcaggtctcctcttggtacctcc
tactggaagccaaagccaaggacagatgaagatggggtttgcagtggccggcctctgggg
acacagagcaaatccgagaacagcagatga

>gi568815597f:20090562_20291401|GENSCAN_predicted_peptide_8|66_aa
MGQADHQTLWGLTNMGFYLKGIQKPSENCFWNIGFTSRYCSLPGMLCLILSELTGSRVFP
DGSAPG

>gi568815597f:20090562_20291401|GENSCAN_predicted_CDS_8|201_bp
atgggacaggctgaccaccagaccctgtggggtctaacgaacatgggcttttatctcaaa
ggaattcagaagccatcagagaactgcttctggaacattggatttacttccagatactgc
tctctgccaggaatgctctgccttatcctttcagagctgactgggagcagagtttttcct
gatggctctgcccctggttga