GENSCAN 1.0	Date run:  4-Nov-116	Time: 04:52:53

Sequence gi568815579f:29573840_29774676 : 200837 bp : 49.64% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   7788   7914  127  2  1   40   76   104 0.061   4.65
 1.02 Intr +  32205  32486  282  1  0   91   63   149 0.590  10.09
 1.03 Intr +  34818  34870   53  1  2  107   82    44 0.995   4.33
 1.04 Intr +  36570  36793  224  2  2   76   76   436 0.998  38.13
 1.05 Intr +  38023  38100   78  1  0   83  113    11 0.761   1.77
 1.06 Intr +  38278  38339   62  1  2   91   91    24 0.769   1.38
 1.07 Intr +  40032  40133  102  1  0  107   95    46 0.925   7.35
 1.08 Intr +  41405  41491   87  0  0  107    5    82 0.251   1.74
 1.09 Intr +  42885  43028  144  1  0   53   30   106 0.008   1.55
 1.10 Intr +  43565  43610   46  0  1  111   80    20 0.011   0.97
 1.11 Intr +  48001  48106  106  1  1   39   61    67 0.274  -0.68
 1.12 Intr +  50408  50559  152  1  2   84   75   182 0.801  15.46
 1.13 Intr +  67844  68042  199  2  1   13   -2   241 0.096   6.95
 1.14 Intr +  83992  84094  103  0  1   73   64    42 0.016   0.05
 1.15 Intr +  97772  97820   49  0  1   76   74    45 0.059  -0.36
 1.16 Intr +  99985 100813  829  1  1  112  -11  1733 0.151 157.21
 1.17 Intr + 100837 101028  192  0  0   71   95    41 0.311   2.79
 1.18 Intr + 103361 103545  185  1  2  136   40    43 0.163   2.89
 1.19 Term + 108371 108596  226  2  1   56   55   133 0.295   3.05
 1.20 PlyA + 111299 111304    6                               1.05

 2.00 Prom + 113793 113832   40                              -7.46
 2.01 Init + 116072 116158   87  1  0   70  100   108 0.616  10.84
 2.02 Term + 123220 123903  684  0  0  -15   47   300 0.509   9.24
 2.03 PlyA + 124695 124700    6                               1.05

 3.11 PlyA - 125768 125763    6                               1.05
 3.10 Term - 129138 128873  266  1  2  102   47   505 0.996  43.47
 3.09 Intr - 134584 134415  170  0  2   58  111   205 0.210  19.39
 3.08 Intr - 141460 141286  175  2  1    3  103   108 0.194   2.80
 3.07 Intr - 149465 149372   94  2  1  101   98    67 0.593   8.54
 3.06 Intr - 155010 154894  117  0  0   49   47    88 0.399   1.46
 3.05 Intr - 160654 160571   84  1  0   49   29   119 0.007   2.12
 3.04 Intr - 168043 167986   58  0  1   44   98    39 0.005  -0.61
 3.03 Intr - 171038 170923  116  2  2   89   69    32 0.001   0.65
 3.02 Intr - 187542 187425  118  2  1   69   52   102 0.251   5.17
 3.01 Intr - 200566 200533   34  2  1  108  100    20 0.082   2.48

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  31719  31794   76  2  1   86   58    11 0.838  -2.84
S.002 Term -  57124  57002  123  1  0   48   47   136 0.862   3.88
S.003 Intr + 167228 167298   71  2  2   49   77    51 0.832  -1.07
S.004 Term + 167484 167599  116  1  2   95   53    76 0.905   3.53


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815579f:29573840_29774676|GENSCAN_predicted_peptide_1|1081_aa
LFLGLLTSWHFWLAAPIDEGAPGKEMQVLAIGSGSDMHKSGKGLSKHSTCLYPNPTACPP
KDAGGKDPRKRAHSSPLLSNTAYDVLSSRIPFQAHAPPRWASAGDVTHSAISELRESATA
AASASSESAGSGPRMKSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRSTPRMSPQA
REDQLQRKAVVLEYFTRHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELW
KQYIRDLCSGLKPDTQPQMIQAKLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFK
IITKEDRLKVIPKLNCVFTVETDGFISYIYGSKFQLRSRCSEAAQVLSPKQHAVTAASDE
HTHGLGTWSPSTLPPRTRAPAQRLPCGYTVALMAHPGVISPSPQCNHICLFHIIFFHWNV
SCSDAGTLPMVFAAITIPSALKGGSPTRRVEMAPAVQAAEQGAVDKASVAKEAGAAAEVF
SGEKGAGRARRCQKRKKEKQKRRRRRRKEEGGEGGGKKKKRKKRKRRKQKKWKKKMEEEK
EEEKEKEGKERRVLQGVGRCWLEASVSPMGFSGGLHGPLHDSAASFPWSLQYTAKISKLK
IAVLTRQLETMVDHLANTEINSQRIAAVESCFGASGQPLALPGRVLLGEGVLTKECRKKA
KPRIFFLFNDILVYGSIVLNKRKYRSQHIIPLEEVTLELLPETLQAKNRWMIKTAKKSFV
VSAASATERQEWISHIEECVRRQLRATGRPPSTEHAAPWIPDKATDICMRCTQTRFSALT
RRHHCRKCGFVVCAECSRQRFLLPRLSPKPVRVCSLCYRELAAQQRQEEAEEQGAGSPGQ
PAHLARPICGASSGDDDDSDEDKEGSRDGDWPSSVEFYASGLTPGLQNICPQASSTAQAP
KRAAPEAAQGSGTPSHGGRCSGGEWLFLDSQCLFAGHCVLMASLQGWNRTAAAPSPKVLG
PVRAHGLGWPRTFAEPSHLRSCSRTSWAMPAAGDTAGSETNKARTACCPRQHLGYGDLGS
GILEQHTGTLRTVCKLLIPLKYQNAFGFQQPPDLLGAPTMKQRPLNLACPSHNHLLAQPN
P

>gi568815579f:29573840_29774676|GENSCAN_predicted_CDS_1|3246_bp
ctgttcttggggctgctgacttcctggcacttctggcttgctgctcccattgacgaagga
gccccaggcaaagagatgcaggttctggccattggaagtgggagtgacatgcacaaaagt
gggaagggccttagcaagcattccacatgcctttaccccaaccctactgcctgtccccca
aaagatgcaggcggaaaagaccccaggaagcgagcccactcctccccactgctcagcaac
accgcctacgacgttctcagtagccgaatccctttccaggcgcatgcgcccccgaggtgg
gcgagcgccggtgatgtcacgcatagcgccatctccgagctccgagagtctgcgacagca
gctgccagtgcgtcatcagagagcgccggaagcggtccgagaatgaagagtgtgatctac
catgcattgtctcagaaagaggcgaatgactccgatgtccagccttcaggagcacagcgg
gccgaggccttcgtgagggccttcctgaagcgcagcacgccccgcatgagcccgcaggcc
cgcgaggaccagctgcagcgcaaggcggtggtcctggagtacttcacccgccacaagcgc
aaggagaagaagaagaaagccaaaggcctctctgccaggcaaaggagggagctgcggctc
tttgacattaaaccagagcagcagagatacagccttttcctccctctccatgaactctgg
aaacagtacatcagggacctgtgcagtgggctcaagccagacacgcagccacagatgatt
caggccaagctcttaaaggcagatcttcacggggctattatttcagtgacaaaatccaaa
tgcccctcttatgtgggtattacaggaatccttctacaggaaacaaagcacattttcaaa
attatcaccaaagaagaccgcctgaaagttatccccaagctaaactgcgtgttcactgtg
gaaaccgatggctttatttcctacatttacgggagcaaattccagcttcggtcaaggtgt
tctgaggcagctcaagtgctctcccccaagcagcacgcagtcaccgctgccagtgatgaa
cacacgcacgggctaggcacatggagcccaagcacactgccacctcggacacgggccccg
gcccagcgactgccttgtggatacactgttgccctcatggcccacccaggggtcatatct
cccagtccccagtgcaaccatatctgcctgtttcatatcattttcttccactggaatgtg
agctgctcggacgctgggacactgcccatggtgttcgccgccataaccattcccagtgcc
ctgaagggtggcagccccactaggcgagtggagatggctccagccgtccaagctgctgaa
caaggggctgtggacaaggccagcgtggccaaggaggcaggggctgcagctgaggtcttc
tcaggggaaaagggagcaggcagagcaagacgctgtcagaaaaggaagaaagagaagcag
aagaggaggaggaggaggagaaaagaagaaggaggtgaaggaggaggaaagaagaaaaag
aggaagaagaggaagaggaggaagcagaagaagtggaagaagaagatggaggaggagaaa
gaggaggagaaggagaaggaggggaaagaaaggagagttttgcaaggggttggtcgctgt
tggctggaggcctcagtgtctcccatgggcttctccggagggctgcatggacctcttcat
gactcagcagccagcttcccctggagtttgcagtatacagccaagatcagcaagctaaaa
atagcagttcttacccgccagctggagacgatggtggaccacttggccaacacggagatc
aacagccagcgcatcgcggcagtggagagctgcttcggggcctcggggcagccgctggcg
ctgccaggccgagtgctgctgggcgagggcgtgctgaccaaagagtgccgcaagaaggcc
aagccgcgcatcttcttcctctttaacgacatcctggtgtatggcagcatcgtgctcaac
aagcgcaagtaccgcagccagcacatcatccccctggaggaggtcacactggagctgttg
ccggagacgctgcaggccaagaaccgctggatgatcaagacggccaagaagtcctttgtg
gtgtcggccgcctccgctacggagcgccaggaatggattagccacatcgaggagtgcgtg
cggcggcaactgagggccacgggccgcccgcccagcacggagcacgcggcaccctggatc
cccgacaaggccacggacatctgcatgcgctgcacgcagacgcgcttctctgccctcacg
aggcgccaccactgccgcaagtgcggcttcgtggtctgcgctgagtgctcgcgccagcgc
ttcctgctcccgcgcctgtcccccaagcccgtgcgcgtctgcagcctctgctaccgcgaa
ctggccgcccagcagcggcaggaggaggcggaggagcagggcgcggggtccccagggcag
ccagcccacctggcccggcccatctgcggagcgtccagtggagatgacgatgactccgac
gaggacaaggagggcagcagggacggcgactggcccagcagcgtggagttctacgcctcg
gggctgacccccggcctgcagaacatctgtccccaagccagctccactgcccaggccccc
aagagggcagctccagaagctgcccagggctccgggaccccatcccatggtggcaggtgc
agcggtggggagtggctctttctggactcccagtgcctttttgctggacactgtgtcctt
atggcttcactgcagggctggaacagaactgctgctgccccaagtcccaaggtgttaggg
cctgtaagggcccacggcttggggtggcccaggaccttcgcagagccttcacacctgcgg
tcttgctcccgcaccagctgggccatgccagctgctggggacaccgctgggagtgagaca
aacaaggcccgcacagcatgctgcccacggcagcacctgggctatggggacctgggctcc
gggattctggagcagcacactgggacacttcgtacagtttgcaaattactaataccctta
aaataccaaaatgcctttggatttcagcagccaccagacctcctgggggcccccaccatg
aagcagaggcctttgaacctcgcctgccccagccataaccacttgctggcacaacccaat
ccctga

>gi568815579f:29573840_29774676|GENSCAN_predicted_peptide_2|256_aa
MLLAIIPYFPGIIASNMAAPSELSDEELKAPDTRHPDTWTPNTQTPRHSDTQTPRNLTPR
HPDTQTPRNLTPRHPDTQTPDTQTPRNLTARHPDTQTPDTQTPGHSDTQTLRHPDIQTPD
TQKPDTPPPGHPDILPPEHPATQSLGHLDTQPPHHPDTLPLQYPDTPTPRHPDTPLPGHL
DNPPPGHLDTQTPRPSATQTPCHSDTQTPHHLDTWTPGHPDTRTLRHLTTQTPRNLTPRN
LDTRTPRHLTPRHTDT

>gi568815579f:29573840_29774676|GENSCAN_predicted_CDS_2|771_bp
atgttgctggcaattatcccgtattttcctgggataattgccagcaacatggcagccccc
tctgagcttagtgatgaagaattgaaggcacctgacaccagacacccagacacctggaca
cccaacactcagacacccagacactcagatacccagacacccagaaacctgacacccaga
cacccggatacccagacacccagaaacctgacacccagacacccagatacccagacaccc
gacacccagacacccagaaacctgacagccagacacccggatacccagacacccgacacc
cagacacccggacactcagacacccagacactcagacacccagacatccagacacctgat
acccagaaacctgacaccccaccacccggacacccagacatcctgccacctgaacaccct
gccactcagtcacttggacacctggatactcagccaccccaccatccagataccctgcca
ctccaatacccagacaccccaacccccagacacccagacactccactacctggacacctg
gacaacccaccacctggacacctggacacccaaacacccagaccctctgccacccagaca
ccctgccactcagacacccagacaccccaccacctggacacctggacacccggacaccca
gacacccggacactcagacacctcaccacccagacaccgagaaacctgacacccagaaac
ctggacacccggacacccagacacctgacaccaagacacacagacacttga

>gi568815579f:29573840_29774676|GENSCAN_predicted_peptide_3|410_aa
XGQPWTIEDLQRLSPRVMTVSRCRQPCQAPPQTALRDSPERQSQCRILQEEDMSLSLSDA
LDLVGCLPQAEHGLPERRETILCGDHSEQCSEYIFVWVEAHLHTLELWRQRSYGSKVPLE
AAGLQEHQDDLCQGYARAPGEPRRYIEPSLATVDPTVKVCGTNTLCYRDFGEVPEKGPEP
APPSAVPDSEPGSVHYQEHGDTVATREGPAQPEGGTEGGASAGAATKACATLRGAGELGG
EPGACQARAAAASDRRARRVDLRSPRPATMTIMVEDIMKLLCSLSGERKMKAAVKHSGKG
ALVTGAMAFVGGLVGGPPGLAVGGAVGGLLGAWMTSGQFKPVPQILMELPPAEQQRLFNE
AAAIIRHLEWTDAVQLTALVMGSEALQQQLLAMLVNYVTKELRAEIQYDD

>gi568815579f:29573840_29774676|GENSCAN_predicted_CDS_3|1233_bp
ngaggccagccttggacaattgaggacttgcaaagactaagtccccgtgtgatgacggtg
agcaggtgccggcagccatgccaagcacctccccagactgctctgcgggactctcctgag
aggcagtcccagtgccgcatcttacaggaggaggacatgtccctgtcactcagcgacgct
ttagatcttgttggctgccttccccaagcagaacatgggctccctgagaggagggagacc
attctctgtggtgaccattcagagcagtgtagtgagtacatctttgtctgggtagaagca
catcttcacactctggagctatggaggcaaagaagctatggctccaaggttcctctggaa
gcagcaggcctacaagaacatcaggatgacctgtgccaaggctatgccagggcacctggt
gagccacgccgctacattgaaccctcactggccactgtagacccaacagtcaaagtctgt
ggcaccaacaccttgtgttatagagactttggggaagtccccgagaagggcccagaaccc
gcccctccatcagcagttccagactctgagcctgggagcgtgcattaccaggaacatgga
gacacggtggctacacgtgaaggcccggcgcagccggaaggtgggacggagggcggggcc
agcgccggggccgccaccaaggcctgcgcgaccctccgcggggctggggagctgggcggg
gagcccggggcctgccaggcccgggctgcagccgcgtctgatcgccgagcgcgccgcgta
gacctccgctcccccaggcccgccacgatgactatcatggtggaggacatcatgaagctg
ctgtgctccctttctggggagaggaagatgaaggcggctgtcaagcactctgggaagggt
gccctggtcacaggggccatggccttcgtcgggggtttggtgggcggcccaccgggactc
gccgttgggggggctgtcggggggctgttaggtgcctggatgacaagtggacagtttaag
ccggttcctcagatcctaatggagctgccccctgccgagcaacagaggctctttaacgaa
gccgcagccatcatcaggcacctggagtggacggacgccgtgcagctgaccgcgctggtc
atgggcagcgaggccctgcagcagcagctgctggccatgctggtgaactacgtcaccaag
gagctgcgggccgagatccagtatgatgactag