Result of FASTA (ccds) for pF1KB7110
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7110, 260 aa
  1>>>pF1KB7110 260 - 260 aa - 260 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7256+/-0.000956; mu= 12.7589+/- 0.058
 mean_var=73.2185+/-14.916, 0's: 0 Z-trim(105.6): 53  B-trim: 0 in 0/52
 Lambda= 0.149887
 statistics sampled from 8445 (8498) to 8445 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.261), width:  16
 Scan time:  2.300

The best scores are:                                      opt bits E(32554)
CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11      ( 260) 1701 377.0 7.2e-105
CCDS32545.1 KCTD11 gene_id:147040|Hs108|chr17      ( 232)  529 123.5 1.3e-28
CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3         ( 237)  485 114.0 9.5e-26
CCDS12434.1 KCTD15 gene_id:79047|Hs108|chr19       ( 234)  350 84.8 5.7e-17
CCDS46039.1 KCTD15 gene_id:79047|Hs108|chr19       ( 283)  350 84.9 6.8e-17
CCDS11888.1 KCTD1 gene_id:284252|Hs108|chr18       ( 257)  338 82.3 3.8e-16
CCDS9396.1 KCTD4 gene_id:386618|Hs108|chr13        ( 259)  312 76.6 1.9e-14
CCDS34260.1 KCTD16 gene_id:57528|Hs108|chr5        ( 428)  298 73.7 2.3e-13
CCDS9455.1 KCTD12 gene_id:115207|Hs108|chr13       ( 325)  284 70.6 1.5e-12
CCDS12560.1 SHKBP1 gene_id:92799|Hs108|chr19       ( 707)  278 69.5 7.2e-12
CCDS2330.1 KCTD18 gene_id:130535|Hs108|chr2        ( 426)  275 68.7 7.3e-12
CCDS41889.1 KCNRG gene_id:283518|Hs108|chr13       ( 229)  267 66.9 1.4e-11
CCDS10661.1 KCTD13 gene_id:253980|Hs108|chr16      ( 329)  269 67.4 1.4e-11
CCDS9424.1 KCNRG gene_id:283518|Hs108|chr13        ( 272)  267 66.9 1.7e-11
CCDS9128.1 KCTD10 gene_id:83892|Hs108|chr12        ( 313)  266 66.7 2.2e-11
CCDS55117.1 KCTD7 gene_id:154881|Hs108|chr7        ( 288)  261 65.6 4.3e-11
CCDS5534.1 KCTD7 gene_id:154881|Hs108|chr7         ( 289)  261 65.6 4.3e-11
CCDS60908.1 KCTD14 gene_id:65987|Hs108|chr11       ( 225)  254 64.1 9.9e-11


>>CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11           (260 aa)
 initn: 1701 init1: 1701 opt: 1701  Z-score: 1996.2  bits: 377.0 E(32554): 7.2e-105
Smith-Waterman score: 1701; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)

               10        20        30        40        50        60
pF1KB7 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVFRYIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVFRYIL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 NFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEVELSKAEKNAMLNITLNQRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEVELSKAEKNAMLNITLNQRV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSITSHLQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSITSHLQD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PNHLTLDWVANVEGLPEEEYTKQNLKRLWVVPANKQINSFQVFVEEVLKIALSDGFCIDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PNHLTLDWVANVEGLPEEEYTKQNLKRLWVVPANKQINSFQVFVEEVLKIALSDGFCIDS
              190       200       210       220       230       240

              250       260
pF1KB7 SHPHALDFMNNKIIRLIRYR
       ::::::::::::::::::::
CCDS31 SHPHALDFMNNKIIRLIRYR
              250       260

>>CCDS32545.1 KCTD11 gene_id:147040|Hs108|chr17           (232 aa)
 initn: 457 init1: 246 opt: 529  Z-score: 627.3  bits: 123.5 E(32554): 1.3e-28
Smith-Waterman score: 529; 39.7% identity (68.2% similar) in 239 aa overlap (28-259:1-232)

               10        20        30          40          50      
pF1KB7 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSG--KMPTKRDSQG--NCFIDRDGKVF
                                  :::::: .   :: . .:::  . :::::::.:
CCDS32                            MLGAMFRAGTPMPPNLNSQGGGHYFIDRDGKAF
                                          10        20        30   

         60        70        80        90       100        110     
pF1KB7 RYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEV-ELSKAEKNAMLNIT
       :.:::::: ..::::. . : .::: ::::::..::..::.: :. . . :   :.:.  
CCDS32 RHILNFLRLGRLDLPRGYGETALLRAEADFYQIRPLLDALRELEASQGTPAPTAALLHAD
            40        50        60        70        80        90   

         120       130       140       150       160       170     
pF1KB7 LNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSIT
       ..   . :::..:..:. : ::: ....: ::.: :.   :  : .. :  ..:. .  .
CCDS32 VDVSPRLVHFSARRGPHHYELSSVQVDTFRANLFCTDSECLGALRAR-FGVASGDRAEGS
           100       110       120       130       140        150  

         180       190       200       210         220       230   
pF1KB7 SHLQDPNHLTLDWVANVEGLPEEEYTKQNLKRLWVV-PANK-QINSFQVFVEEVLKIALS
        :..      :.:.     ::: :: . .:. ::.  :... .. .   :.::::..:: 
CCDS32 PHFH------LEWAPRPVELPEVEYGRLGLQPLWTGGPGERREVVGTPSFLEEVLRVALE
                  160       170       180       190       200      

           240       250       260
pF1KB7 DGFCIDSSHPHALDFMNNKIIRLIRYR
        :: .::  :   :..:.. .:..:. 
CCDS32 HGFRLDSVFPDPEDLLNSRSLRFVRH 
        210       220       230   

>>CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3              (237 aa)
 initn: 476 init1: 476 opt: 485  Z-score: 575.8  bits: 114.0 E(32554): 9.5e-26
Smith-Waterman score: 485; 71.4% identity (89.8% similar) in 98 aa overlap (1-98:10-107)

                        10        20        30        40        50 
pF1KB7          MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDR
                :.::.::::::.::::::.::: .:::::::::.: .:: :: ::: ::::
CCDS28 MDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFGGDFPTARDPQGNYFIDR
               10        20        30        40        50        60

              60        70        80        90       100       110 
pF1KB7 DGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEVELSKAEKNAM
       :: .:::.:::::::.: :: ::.:. :::.::::::..:::. :..             
CCDS28 DGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLIQCLNDPKPLYPMDTFEEV
               70        80        90       100       110       120

             120       130       140       150       160       170 
pF1KB7 LNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNL
                                                                   
CCDS28 VELSSTRKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFTKWNKHMMDTRDCQVSFTFG
              130       140       150       160       170       180

>>CCDS12434.1 KCTD15 gene_id:79047|Hs108|chr19            (234 aa)
 initn: 372 init1: 221 opt: 350  Z-score: 418.1  bits: 84.8 E(32554): 5.7e-17
Smith-Waterman score: 350; 46.7% identity (81.3% similar) in 107 aa overlap (4-109:57-163)

                                          10        20        30   
pF1KB7                            MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMF
                                     :. ..:::..::.::::::..::: .. .:
CCDS12 MSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPDSRISRLF
         30        40        50        60        70        80      

            40         50        60        70        80        90  
pF1KB7 SGKMPTKRDS-QGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPL
       .:  :   :: . . ::::::..:::.:.:::::.: ::.::....:: .:: .::.::.
CCDS12 NGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTSKLLLPDDFKDFSLLYEEARYYQLQPM
         90       100       110       120       130       140      

            100       110       120       130       140       150  
pF1KB7 IEALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTS
       .. :.. . :  . ...                                           
CCDS12 VRELERWQQEQEQRRRSRACDCLVVRVTPDLGERIALSGEKALIEEVFPETGDVMCNSVN
        150       160       170       180       190       200      

>>CCDS46039.1 KCTD15 gene_id:79047|Hs108|chr19            (283 aa)
 initn: 372 init1: 221 opt: 350  Z-score: 416.8  bits: 84.9 E(32554): 6.8e-17
Smith-Waterman score: 350; 46.7% identity (81.3% similar) in 107 aa overlap (4-109:57-163)

                                          10        20        30   
pF1KB7                            MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMF
                                     :. ..:::..::.::::::..::: .. .:
CCDS46 MSRLSLTRSPVSPLAAQGIPLPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPDSRISRLF
         30        40        50        60        70        80      

            40         50        60        70        80        90  
pF1KB7 SGKMPTKRDS-QGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPL
       .:  :   :: . . ::::::..:::.:.:::::.: ::.::....:: .:: .::.::.
CCDS46 NGTEPIVLDSLKQHYFIDRDGEIFRYVLSFLRTSKLLLPDDFKDFSLLYEEARYYQLQPM
         90       100       110       120       130       140      

            100       110       120       130       140       150  
pF1KB7 IEALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTS
       .. :.. . :  . ...                                           
CCDS46 VRELERWQQEQEQRRRSRACDCLVVRVTPDLGERIALSGEKALIEEVFPETGDVMCNSVN
        150       160       170       180       190       200      

>>CCDS11888.1 KCTD1 gene_id:284252|Hs108|chr18            (257 aa)
 initn: 338 init1: 208 opt: 338  Z-score: 403.4  bits: 82.3 E(32554): 3.8e-16
Smith-Waterman score: 338; 50.5% identity (82.1% similar) in 95 aa overlap (4-97:31-125)

                                          10        20        30   
pF1KB7                            MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMF
                                     :. ..:::..::.::::::..:.: .: .:
CCDS11 MSRPLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLF
               10        20        30        40        50        60

            40         50        60        70        80        90  
pF1KB7 SGKMPTKRDS-QGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPL
       .:  :   :: . . ::::::..:::::::::::.: .:.::... :: .:: ..:.::.
CCDS11 DGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPM
               70        80        90       100       110       120

            100       110       120       130       140       150  
pF1KB7 IEALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTS
       .  ..                                                       
CCDS11 LLEMERWKQDRETGRFSRPCECLVVRVAPDLGERITLSGDKSLIEEVFPEIGDVMCNSVN
              130       140       150       160       170       180

>>CCDS9396.1 KCTD4 gene_id:386618|Hs108|chr13             (259 aa)
 initn: 343 init1: 299 opt: 312  Z-score: 373.0  bits: 76.6 E(32554): 1.9e-14
Smith-Waterman score: 312; 42.9% identity (73.7% similar) in 133 aa overlap (5-135:35-166)

                                         10        20        30    
pF1KB7                           MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFS
                                     .:::::: :: :.  :::..::..: .. .
CCDS93 INRREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLEGIVN
           10        20        30        40        50        60    

           40        50        60        70        80        90    
pF1KB7 GKMPTKRDSQGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIE
       ::.    :..:. :::::: .::..:::::...: ::: :.:  :: .::.:.:.. : :
CCDS93 GKILCPFDADGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLKGLAE
           70        80        90       100       110       120    

           100       110        120       130       140       150  
pF1KB7 ALQEK-EVELSKAEKNAMLNITLNQ-RVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTS
        .. . : :    .....:.:: :. : : ...   .::.. :                 
CCDS93 EVKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFC-NAPDFISKIKSRIVLVSKSRLDGF
          130       140       150        160       170       180   

            160       170       180       190       200       210  
pF1KB7 CLFLKLLGSKLFYCSNGNLSSITSHLQDPNHLTLDWVANVEGLPEEEYTKQNLKRLWVVP
                                                                   
CCDS93 PEEFSISSNIIQFKYFIKSENGTRLVLKEDNTFVCTLETLKFEAIMMALKCGFRLLTSLD
           190       200       210       220       230       240   

>>CCDS34260.1 KCTD16 gene_id:57528|Hs108|chr5             (428 aa)
 initn: 303 init1: 209 opt: 298  Z-score: 353.3  bits: 73.7 E(32554): 2.3e-13
Smith-Waterman score: 298; 45.8% identity (67.3% similar) in 107 aa overlap (5-107:27-133)

                                     10        20        30        
pF1KB7                       MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMP
                                 . :::::..: :  .:: :.: :.:  ::: :  
CCDS34 MALSGNCSRYYPREQGSAVPNSFPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPKRD
               10        20        30        40        50        60

       40            50        60        70        80        90    
pF1KB7 TK----RDSQGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIE
       :     .::.:  :::::: .:::::..::  .. ::. : : : :.:::...:.  :..
CCDS34 TANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVK
               70        80        90       100       110       120

          100       110       120       130       140       150    
pF1KB7 ALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCL
        :   :.. :  :                                               
CCDS34 LLTPDEIKQSPDEFCHSDFEDASQGSDTRICPPSSLLPADRKWGFITVGYRGSCTLGREG
              130       140       150       160       170       180

>>CCDS9455.1 KCTD12 gene_id:115207|Hs108|chr13            (325 aa)
 initn: 300 init1: 183 opt: 284  Z-score: 338.8  bits: 70.6 E(32554): 1.5e-12
Smith-Waterman score: 284; 45.8% identity (74.0% similar) in 96 aa overlap (3-96:34-129)

                                           10        20        30  
pF1KB7                             MSDPITLNVGGKLYTTSLATLTSFPDSMLGAM
                                     : . :::::..:.:   :..: :::.:  :
CCDS94 ADSTRGLPNGGGGGGGSGSSSSSAEPPLFPDIVELNVGGQVYVTRRCTVVSVPDSLLWRM
            10        20        30        40        50        60   

             40          50        60        70        80        90
pF1KB7 FSGKMPTK--RDSQGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQ
       :. ..: .  :::.:  :.:::: .:::::..::  .: ::. : : . :.:::..... 
CCDS94 FTQQQPQELARDSKGRFFLDRDGFLFRYILDYLRDLQLVLPDYFPERSRLQREAEYFELP
            70        80        90       100       110       120   

              100       110       120       130       140       150
pF1KB7 PLIEALQEKEVELSKAEKNAMLNITLNQRVQTVHFTVREAPQIYSLSSSSMEVFNANIFS
        :.. :                                                      
CCDS94 ELVRRLGAPQQPGPGPPPSRRGVHKEGSLGDELLPLGYSEPEQQEGASAGAPSPTLELAS
           130       140       150       160       170       180   

>>CCDS12560.1 SHKBP1 gene_id:92799|Hs108|chr19            (707 aa)
 initn: 290 init1: 220 opt: 278  Z-score: 326.5  bits: 69.5 E(32554): 7.2e-12
Smith-Waterman score: 278; 35.9% identity (61.5% similar) in 195 aa overlap (5-190:21-207)

                               10        20        30        40    
pF1KB7                 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQ
                           : :::::: ..::  ::: .:::......::.. : .:  
CCDS12 MAAAATAAEGVPSRGPPGEVIHLNVGGKRFSTSRQTLTWIPDSFFSSLLSGRISTLKDET
               10        20        30        40        50        60

           50        60        70        80        90       100    
pF1KB7 GNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEVELS
       :  :::::  ::  :::::::..:: :.  .  .::. ::.:: . ::.. :: .: ::.
CCDS12 GAIFIDRDPTVFAPILNFLRTKELD-PRGVHGSSLLH-EAQFYGLTPLVRRLQLRE-ELD
               70        80         90        100       110        

           110       120       130          140       150       160
pF1KB7 KAE-KNAMLNITLNQRVQTVHFTVREA---PQIYSLSSSSMEVFNANIFSTSCLFLKLLG
       ..   :...:  :   :  :.   :..   ::  .:..    :  .: .  .     :::
CCDS12 RSSCGNVLFNGYLPPPVFPVKRRNRHSLVGPQ--QLGGRPAPVRRSNTMPPNLGNAGLLG
       120       130       140         150       160       170     

              170       180            190       200       210     
pF1KB7 SKLFYCSNGNLSSITSHLQDPNHLTL-----DWVANVEGLPEEEYTKQNLKRLWVVPANK
         :   .. .  : ... ..:. . :     .:.:                         
CCDS12 RML---DEKTPPSPSGQPEEPGMVRLVCGHHNWIAVAYTQFLVCYRLKEASGWQLVFSSP
            180       190       200       210       220       230  

         220       230       240       250       260               
pF1KB7 QINSFQVFVEEVLKIALSDGFCIDSSHPHALDFMNNKIIRLIRYR               
                                                                   
CCDS12 RLDWPIERLALTARVHGGALGEHDKMVAAATGSEILLWALQAEGGGSEIGVFHLGVPVEA
            240       250       260       270       280       290  




260 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:45:35 2016 done: Fri Nov  4 04:45:35 2016
 Total Scan time:  2.300 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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