GENSCAN 1.0	Date run:  4-Nov-116	Time: 04:40:56

Sequence gi568815593r:42939468_43140046 : 200579 bp : 44.01% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  11583  11898  316  1  1   39  -28   252 0.490   3.82
 1.02 Term +  11948  12416  469  2  1   15   43   361 0.925  18.75
 1.03 PlyA +  14235  14240    6                               1.05

 2.00 Prom +  31380  31419   40                              -0.86
 2.01 Init +  31474  32101  628  0  1   71    5   341 0.443  19.62
 2.02 Term +  33134  33243  110  0  2   88   46    78 0.277   2.27
 2.03 PlyA +  33595  33600    6                               1.05

 3.06 PlyA -  33790  33785    6                               1.05
 3.05 Term -  34297  34105  193  0  1   65   39   113 0.057   0.99
 3.04 Intr -  46195  46139   57  0  0   69  113    36 0.074   2.20
 3.03 Intr -  52766  52461  306  1  0   11  -21   262 0.103   3.16
 3.02 Intr -  53123  52859  265  0  1    8   53   298 0.591  14.87
 3.01 Init -  61127  60920  208  2  1   42   91    83 0.232   1.01
 3.00 Prom -  65273  65234   40                              -5.86

 4.03 PlyA -  65452  65447    6                               1.05
 4.02 Term -  69317  69206  112  1  1   35   47   176 0.990   6.23
 4.01 Init -  70737  70562  176  0  2   93   98    54 0.839   5.74
 4.00 Prom -  72046  72007   40                              -3.36

 5.03 PlyA -  72475  72470    6                               1.05
 5.02 Term -  79094  78776  319  1  1    6   46   456 0.841  27.55
 5.01 Init -  80175  80069  107  0  2   37  101    79 0.998   3.79
 5.00 Prom -  95981  95942   40                              -3.36

 6.00 Prom +  96730  96769   40                              -4.66
 6.01 Init + 100133 100434  302  1  2   80   81   179 0.903  11.34
 6.02 Term + 102519 103278  760  0  1   33   49   483 0.553  31.80
 6.03 PlyA + 104191 104196    6                               1.05

 7.00 Prom + 110207 110246   40                              -0.76
 7.01 Init + 110826 110871   46  2  1   59   48    37 0.243  -2.36
 7.02 Intr + 111092 111156   65  0  2  102   94    -2 0.436   0.24
 7.03 Term + 114767 115099  333  1  0   52   54   362 0.955  23.81
 7.04 PlyA + 115934 115939    6                               1.05

 8.00 Prom + 116111 116150   40                              -4.96
 8.01 Sngl + 116858 117232  375  1  0   32   49   173 0.672   3.94
 8.02 PlyA + 117410 117415    6                               1.05

 9.00 Prom + 120635 120674   40                              -2.46
 9.01 Init + 120759 120891  133  2  1   78   47   103 0.274   5.50
 9.02 Intr + 124229 124415  187  0  1  101   34    71 0.267   1.75
 9.03 Intr + 127001 127457  457  2  1   14   59   430 0.201  25.92
 9.04 Term + 127846 128118  273  0  0   70   48    69 0.160  -3.43
 9.05 PlyA + 128902 128907    6                               1.05

10.03 PlyA - 130832 130827    6                               1.05
10.02 Term - 134075 133595  481  1  1   24   45   226 0.374   6.17
10.01 Init - 151256 151195   62  2  2   95   29    77 0.126   1.23
10.00 Prom - 153369 153330   40                              -2.66

11.00 Prom + 155760 155799   40                              -4.46
11.01 Init + 156396 156478   83  2  2   80   86    44 0.071   1.97
11.02 Intr + 182016 182061   46  0  1    8  105    89 0.020   1.01
11.03 Intr + 182572 182710  139  0  1   74   76   201 0.437  17.54
11.04 Intr + 183742 183843  102  2  0   91   94    20 0.358   3.05
11.05 Intr + 199698 199842  145  1  1  104   80    86 0.580   8.74

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  94833  94967  135  2  0   82   48    96 0.853   3.02
S.002 Sngl + 120042 120452  411  2  0   84   47   157 0.818   7.49


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593r:42939468_43140046|GENSCAN_predicted_peptide_1|261_aa
XTPAAQPPDWVLEAEPQSVRRRWEEKAPRQLPCHRPRGAAGSPSPAPPPPGNSRRNWAQL
GQLRHRIPHICNLGAAATEKMEAQTNERCRDRETSAGEMVVPGACDQWRRHQETIDSEKK
ERFGHRETPYDKCCGRKTAYSAPQAKQPMETPGAATVTPALEGLGWRKRRTETRKLCVAQ
LAENRLVGHPGESADQKQATSMQGTAQPLKKVTHVAVVPAKHCSLDGSCGDATEKHALPL
KYIQLRGASVHMIKKPPVGLC

>gi568815593r:42939468_43140046|GENSCAN_predicted_CDS_1|786_bp
naaaccccagcagcgcagccaccggactgggttctggaggccgagccgcagtccgtgcgg
cggcgctgggaagagaaggcgccccggcagctcccctgccaccggccccgaggagcggct
ggctcccccagcccagcgccgccgccgcccggtaactccaggcgcaactgggcgcaactg
gggcagctgcgacaccgaatccctcacatctgcaacctgggtgctgcggccactgagaaa
atggaggcgcagaccaacgagcggtgccgcgaccgagagacctcggctggcgaaatggtg
gtgccgggagcctgcgaccaatggcgccgtcaccaagaaaccatcgactctgagaaaaaa
gagaggttcggccaccgagaaactccgtacgacaagtgctgtggcagaaaaaccgcctac
tccgcgccacaggcaaaacagccaatggaaaccccaggtgctgcgaccgtgacaccggca
ctagagggtctcggatggagaaagcggcgcacggagaccaggaaactatgtgtagcacaa
ctagcagaaaaccgtctggtcggccatccgggagaaagcgcggatcagaaacaagcgact
tcgatgcagggaaccgcgcagccactgaagaaagtgacccacgtggcagtggtgccagcg
aaacactgcagtttggacggcagctgtggggatgccacagagaaacatgcactgccactg
aagtacatccagctccgcggagctagtgttcatatgatcaagaaaccgccagttgggctc
tgctag

>gi568815593r:42939468_43140046|GENSCAN_predicted_peptide_2|245_aa
MEFHPSTLEELSWRQAGPEPHIPRDLNREQAWAWALDNFPVLSRHSCQCHQLYGSSAGSW
RLHRASTGHGALPGDERGQKRPRDSHVEESKAETTDGLQSPQEDANATDGEVQSCLMQPG
DASACGGGRTQAHGALCSSGRPRKLLKTQGSIRKEPGNERNPSLSASLRHYPLQGTLCWK
EPEAHQWGPSFCPCGLLHWNCALHPQEPGDISRTVCSIKIWASEHVFSTRGKLLQQLQCR
NIQAL

>gi568815593r:42939468_43140046|GENSCAN_predicted_CDS_2|738_bp
atggagttccatccatcaaccttggaagagctgtcttggaggcaagcaggtccagagccc
catataccacgggacctgaaccgagagcaagcctgggcctgggcactggataacttccct
gtgctgagccgccactcctgccaatgccatcagctctacgggagctctgctgggagctgg
cggctgcaccgcgcctccaccgggcacggagcccttcccggagatgagaggggccaaaaa
cggcctcgagactcccatgtcgaggaatcaaaggctgaaaccacagacgggctccagtca
cctcaagaagacgcaaatgctaccgacggcgaagtccaaagctgcctgatgcagcctgga
gatgccagcgcctgcggaggtggaaggacacaagcccatggcgccctctgcagttcaggc
cgcccccggaagctgctgaaaacccagggttccatcaggaaggaacccggaaacgagagg
aaccccagcctttctgcaagcctgcgacactacccgcttcaaggaacactgtgctggaag
gagcctgaggcacaccagtggggaccctcattctgtccctgcggacttttacactggaac
tgtgccctgcacccacaagagcctggagacatttctcggactgtctgcagcatcaagata
tgggcttcagagcacgtttttagcacccgtgggaaactgttacaacagctgcaatgcaga
aatatccaagccctgtga

>gi568815593r:42939468_43140046|GENSCAN_predicted_peptide_3|342_aa
MQPPALPRAPAAPPELPAPDPEQATLRPASRYSEAWERDLFAGSFSKEARRERKVCGSGN
LGRPRRARSENGGIEQRAVLRPRDLSSAKCRCLELANDCGRRVVKDNIPYGATNSAVTKK
LDSEKKEGFGHRETPCHMCRDSKTARSAPLVKELTNASAVATGKLSGQCCCGCEKPVIRR
RSGAGRWTRWCENLAALGPGKRGHQANASDFARQMHVFFGRHSKMQPAVSPGSEKQVEVS
AINPPFREKRVAATDRLAVGSCMPVKLLMSAVLQDPMRRNIDRTGGHYPYQTNAGTEKQI
PYVLTYKLELNNENTWTQRGEYQTLEPLKVDGERRERIGKNN

>gi568815593r:42939468_43140046|GENSCAN_predicted_CDS_3|1029_bp
atgcagcctcctgctctcccgagggctcctgcggctcctcctgaattgcctgcgccggat
ccagagcaggcgactctgcgccccgcctccaggtactctgaggcttgggaaagagatctt
ttcgccggcagtttcagcaaggaagcacgcagggagcggaaagtatgtggcagtggaaat
ctaggtcggcccaggagagctcgcagtgaaaatggaggcatcgagcaacgagctgtgctg
agaccgagagacctcagttctgcgaaatgtcggtgcctggagcttgcgaatgactgcggc
cggcgggttgtcaaggacaacattccttatggcgcaaccaacagcgctgtcaccaagaaa
ctggactctgagaaaaaagagggtttcggccaccgagaaactccgtgccacatgtgccgt
gacagcaaaaccgcccgctccgcgccgctggtgaaagagctaacgaacgccagcgctgtc
gcaaccggaaaactgtcaggccagtgctgctgcggatgtgagaaaccggtgatccgaagg
cggagtggcgctgggcgctggactcgctggtgtgaaaatctggctgctctaggacccggc
aagcgcgggcaccaggcgaacgccagcgactttgccagacaaatgcatgtcttttttggt
cgccattcaaagatgcagccggcagtcagccccggctctgagaaacaagtggaggtgtca
gccataaaccctccgttcagggaaaagagagtcgctgcgacggatcgactggccgttggg
tcctgcatgccagtaaaactactcatgtcagctgttctgcaggatcccatgagaaggaac
atagacagaactggaggccattatccttaccaaactaatgcaggaacagaaaagcaaata
ccgtatgtcctcacttataagctggagctgaataatgagaacacatggacacaaagaggg
gaataccagacactggagccattgaaggtggatggtgaaaggagggagaggattgggaaa
aataactaa

>gi568815593r:42939468_43140046|GENSCAN_predicted_peptide_4|95_aa
MAQLRSEADVASEGLADGCRDHRGLDFEMSRTKCCPFSAALPVSAGTVGAAVQPNFDFRV
LFRGSVPMSSQQFRISTFANSGDSVFSRLLHRWKR

>gi568815593r:42939468_43140046|GENSCAN_predicted_CDS_4|288_bp
atggctcagttgagaagtgaggcagatgtggcctcagagggtctggcggatggctgccgg
gatcaccgggggctggactttgagatgtccaggacgaagtgttgccctttcagtgctgcc
ctccctgtgtctgctggaactgttggagccgcagtgcagcctaattttgacttcagggtt
ctcttccgcggctctgtgcctatgtcgagccagcagtttcgcatcagcactttcgccaat
agcggagactcagtgttttctcggctgctgcaccgctggaagcgctga

>gi568815593r:42939468_43140046|GENSCAN_predicted_peptide_5|141_aa
MQNHQLRIRRRATRHNLAPDSRETETELGSPDPERIPQIGDLGAVGTEKIQAPSQKQCRN
QETSAWRNGGVWSLRVTPAGGAVKENIRYGATNGTVTKKPSSLRKKETFGRRETPYKCCD
RKTAGSAQRQKSQRERRVLRP

>gi568815593r:42939468_43140046|GENSCAN_predicted_CDS_5|426_bp
atgcaaaaccatcagctccgcatacgaaggagagccaccagacacaacctggcacctgac
agcagggagactgagaccgagctcggctccccggatcctgagagaatccctcagatcggc
gacctgggcgctgtaggcaccgagaaaatacaggcaccgagccagaagcagtgccgcaac
caagagacctcggcttggcgaaatggcggcgtctggagcctgcgagtgacgccagctggt
ggggctgtcaaggagaacattcgttacggcgcaaccaacggtactgtcaccaagaaaccg
tcgtctctgagaaaaaaagagacgttcggccgccgagaaactccgtacaagtgctgtgac
agaaaaaccgccggctccgcgcagcggcaaaagagccaacgggaacgccgggtgctgcga
ccatga

>gi568815593r:42939468_43140046|GENSCAN_predicted_peptide_6|353_aa
MAAFQKAPAVTDLGVLLSVPGMERTAPGKLLEPESVGFLCLPHLFYGCLLLLLCPRPTEL
SGLRCTWFQGALDSRRESVLPVDSGQPPARAGKQSQITAVQGWKSQAPRNRNLLGLRSQR
RAKPWGPATETPAAPPQDCVLEAEPEPVRRRWEETVPLQLPCHRLQGASGSPRPALQHPS
GNARLGATGAAATLNLSDPRPEGCRHREMEAQSCEQETTARRNGGARSLKGNAAGGVVKD
NICFGATSGAVTKKPSTLRKKEKFGYRETPCSKCCDSKTAGFAPLAKEPTETPGAATAKP
ALEGLGWRKPRTETRKLCTARLAVDTNRKVSRLLSGRKRGSKPATQWREPRSH

>gi568815593r:42939468_43140046|GENSCAN_predicted_CDS_6|1062_bp
atggcggcgttccaaaaggcacccgctgtcacagacctcggtgtcctgctgtctgtccca
gggatggagaggactgctccagggaagctgctggagcctgagtctgtcgggttcctctgc
ctgccccacctcttctacgggtgcctcttgctgcttctgtgtccccggccaactgaactc
agtgggcttcgctgtacttggttccaaggtgctctggactccaggagagagtccgttttg
ccagtagactccgggcagccgccagcaagggctggaaagcagtcccaaatcacagctgtc
caagggtggaaatcccaggcaccgcgaaatcgaaacttgctaggactaagaagccaacga
cgcgcgaaaccgtggggtcctgcgacagagacgccggcggcgccgccacaggactgcgtt
ctggaggccgagccggaacccgtgcggcggcgctgggaagagactgtgcccctgcagctc
ccctgtcaccggctccaaggagcgtcgggctccccccgcccagccctgcagcacccatcc
ggcaacgccagactcggcgcaacgggggcagctgcgactttaaatctctcagatccgcgg
cctgagggctgccgccaccgagaaatggaggcacagagctgtgaacaagagaccacggct
cgccgaaatggcggtgccaggagcctgaaagggaatgcagccggcggggttgtcaaggac
aacatttgttttggcgcaaccagcggtgccgtcaccaagaaaccgtcgactctgagaaaa
aaagagaagttcggctaccgagaaactccgtgcagcaagtgctgtgacagcaaaaccgcc
ggcttcgcgccgctggcgaaagagccaacggaaacgccgggtgctgcgaccgcgaagccg
gcactagagggcctcggatggagaaagccccgcaccgagacgaggaaactgtgcacagca
cgactagcagttgacacaaacagaaaagtgtctcgtctgctctctgggagaaagcgtgga
tcaaaaccagcaactcagtggagagaaccccgcagccactga

>gi568815593r:42939468_43140046|GENSCAN_predicted_peptide_7|147_aa
MGKNENCFYCFKRKEGTETTHSDLRNWSGLKGFLALQNHSSSPSTEQSWTENNFDEVTEV
GFRRSVITNFSELKEDVQTHRKEAKNLEKRLDEWLTGINSIEKTLNDLMELKTMAQVLRD
ACTSFSSRFDQVEESVSVIEDQKNEMK

>gi568815593r:42939468_43140046|GENSCAN_predicted_CDS_7|444_bp
atggggaagaatgagaactgcttttactgcttcaaaagaaaagagggaacagaaacaaca
cactcagacttgagaaactggtctggtttaaaagggttcctggccttacagaatcacagc
tcctcgccatcaacggaacaaagctggacagagaataactttgacgaggtgacagaagta
ggcttcagaagatcggtaataacaaacttctccgagctaaaggaggatgttcaaactcat
cgcaaagaagctaaaaaccttgaaaaaagattagacgaatggctaactggaataaacagc
atagagaagaccttaaatgacctgatggagctgaaaaccatggcacaagtactacgtgat
gcatgcacaagcttcagtagccgatttgatcaagtggaagaaagcgtatcagtgattgaa
gatcaaaagaatgaaatgaagtga

>gi568815593r:42939468_43140046|GENSCAN_predicted_peptide_8|124_aa
MVSRSWFLEKINKIDRPLARLIKKKREKNQIDAIKNDKGDITTDPTEIQTTIREYYKHLY
VNKLENLKEMDKFLDTSTLPRLNQEEVESLNRPITGSEIEAIINSLPTKKSPGPDGFTAK
FCQR

>gi568815593r:42939468_43140046|GENSCAN_predicted_CDS_8|375_bp
atggtatccaggagctggtttttggaaaagatcaacaaaattgatagaccactagcaaga
ctaataaagaagaaaagagagaagaatcaaatagacgcaataaaaaatgataaaggggat
atcaccaccgatcccacggaaatacaaactaccatcagagaatactataaacacctctat
gtaaataaactagaaaacctaaaagaaatggataaattcctggacacatccaccctccca
agactaaaccaggaagaagttgaatccctgaatagaccaataacaggctctgaaattgag
gcaataattaatagcctaccaaccaaaaaaagtccaggaccagatggattcacagccaaa
ttctgtcagcggtag

>gi568815593r:42939468_43140046|GENSCAN_predicted_peptide_9|349_aa
MEYYAAIKKDEFMSFAGTWMKLETIILSKLPQGQKTKHYTLSLIGVCSFWPAAEPREAAW
DGVGKHPASPRPMKSRYGTTSSARTQKLAKLFRRSCGLDPPAVLPRSSSASGSEERRAPP
PSAGVAREPQTLRNWLRFQIPQIGYQSAAATEKMEAPRNKMCRDQENSAWRNGGAGTLRV
TPAGGVPKDNIHFGGTNGVVTQKMSTLGKERFCDREIRCNKCCDRKPPARRCWRKSQQNA
GCCHRDTDFRTPASDGERRRSHTEGPINRSLAMRMGKGGSIGTENRADWAGPGNKSHPGR
QPSSTARNKPSSGWAPPFSLVRALQAPKGEADTSSLWNLKFSVQDLRGE

>gi568815593r:42939468_43140046|GENSCAN_predicted_CDS_9|1050_bp
atggaatactatgcagccataaaaaaggatgagttcatgtcctttgcagggacatggatg
aaactggaaaccatcattctgagcaaactaccacaaggacagaaaaccaaacactacacg
ctctcactcataggagtctgttccttttggccggctgctgaacctagggaggcagcgtgg
gatggagttggcaaacatcctgcaagtccacgacccatgaagagccgctatggtaccact
agcagtgctaggacccagaaactagcgaaactgtttaggagaagctgcgggctggaccca
ccagcggtgctgccacggagctcctctgcctctggctcggaggagcggcgggctcccccg
cccagcgccggcgtcgcccgggaaccccagactctgcgcaactggctgcgattccaaatc
cctcagatcggctaccagagcgctgccgccaccgagaaaatggaggcaccgaggaacaag
atgtgccgcgaccaagagaactcggcttggcgaaatggcggtgctgggaccctaagagtg
acgccagccggaggagttcccaaggacaacatccattttggcggaaccaacggtgttgtc
acgcagaaaatgtcgaccctcggaaaagagaggttctgcgaccgagaaattcggtgcaac
aagtgctgtgacagaaaaccccccgctcggcgctgctggcgaaagagccaacaaaacgct
gggtgctgccaccgtgacaccgactttaggaccccggcctcggatggagaaaggaggcga
agtcatactgagggccccatcaaccgatcccttgcgatgcgcatgggaaaaggaggcagt
atagggaccgagaatcgggcggattgggctggccctggtaacaaaagccatccgggtcgc
caaccgtcttccactgcaagaaacaaaccttccagtggctgggctccgcccttctccttg
gtcagagccctccaggctcctaagggcgaagccgacacctcatccctttggaacttgaag
ttctcagtccaagacctccgtggagagtga

>gi568815593r:42939468_43140046|GENSCAN_predicted_peptide_10|180_aa
MTCASLSLVQLCLLAMLREIRPNQPRRNHYFKPLVHVPIHPDIRRKLQKLDDGSQNPQRD
LLNLAFKVFNNRDEENKRQKHAEFQMLDSAIRGPAGPQGRSSTQKPPSNPPPPGACFKYG
NEGHWSRQCPNPGKPIRPCPLCRGPHWKLDCERPPQGPLPSLPELAKTSYSDLTGLATED

>gi568815593r:42939468_43140046|GENSCAN_predicted_CDS_10|543_bp
atgacctgtgcctcactttccctagtccagctgtgcctcctggccatgctgagagaaatc
agacccaaccagcccagaaggaaccactattttaaacctttagttcatgtcccaatccac
cccgatattcggcgtaagctacagaagcttgatgatggctctcaaaacccacaacgagac
cttcttaatttagccttcaaagtctttaacaatcgtgatgaggaaaataaaaggcaaaaa
catgcagagtttcaaatgcttgactccgccatccggggccctgcaggcccacagggccgc
agctccacacagaagcctcctagcaatccacctccacctggcgcatgtttcaagtatggc
aatgaaggccactggtctagacaatgcccaaacccaggtaagcccatcaggccatgcccc
ctctgcagaggaccccactggaagttggactgtgagcggcccccacaaggaccactccca
tcccttcctgagctggccaaaacctcctactcggatctcactggccttgccactgaagac
tga

>gi568815593r:42939468_43140046|GENSCAN_predicted_peptide_11|172_aa
MHLSWPRPGHQLLCSLSFLSSQTRNMHGRPRQPELDAVTVCVDSSPTAMEAEETMECLQE
FPEHHKMILDRLNEQREQDRFTDITLIVDGHHFKAHKAVLAACSKFFYKFFQEFTQEPLV
EIEGVSKMAFRHLIEFTYTAKLMIQGEEEANDVWKAAEFLQMLEAIKALEVS

>gi568815593r:42939468_43140046|GENSCAN_predicted_CDS_11|516_bp
atgcacctgtcctggcccaggcccggccaccagctcctctgctccctgtccttcctcagc
agccaaaccagaaacatgcatgggcgtccgcgtcagccggagctcgacgcggtgacggtg
tgcgtcgacagcagcccgacggccatggaggctgaagagacgatggaatgccttcaggag
ttccctgaacatcataaaatgatcctcgaccgattgaatgaacagcgagagcaggaccgg
tttactgacatcaccctaattgtcgacggacaccattttaaggctcacaaggctgttttg
gctgcttgtagtaagttcttctacaaattctttcaggagtttacccaagaaccattggtg
gagatagaaggtgttagtaaaatggcctttcgccatttaattgagttcacatatacagca
aaattaatgatacaaggagaagaagaagccaatgatgtatggaaagcagcagagtttcta
caaatgctagaagctatcaaagcccttgaagtcagn