GENSCAN 1.0	Date run:  4-Nov-116	Time: 04:08:12

Sequence gi568815586r:21665726_21873616 : 207891 bp : 37.36% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    276    406  131  2  2   58   77   106 0.630   6.17
 1.02 Intr +   3846   3892   47  0  2   60   67    74 0.178  -0.37
 1.03 Intr +   7682   7795  114  0  0   21   -2   166 0.489   0.40
 1.04 Intr +  11570  11946  377  0  2   32   54   286 0.055  13.41
 1.05 Intr +  12129  12182   54  2  0   74   94    28 0.037   0.26
 1.06 Intr +  17149  17176   28  0  1   95  105    36 0.034   2.77
 1.07 Term +  22512  22687  176  1  2   43   42   142 0.017   2.04
 1.08 PlyA +  23013  23018    6                               1.05

 2.03 PlyA -  26168  26163    6                               1.05
 2.02 Term -  29191  28826  366  1  0   61   49   225 0.992   9.52
 2.01 Init -  29658  29533  126  0  0  106   68    85 0.974   8.51
 2.00 Prom -  30186  30147   40                              -4.75

 3.00 Prom +  33405  33444   40                              -5.05
 3.01 Init +  55692  55842  151  2  1   65   55    66 0.790   1.26
 3.02 Term +  55911  56041  131  1  2  102   48    93 0.765   4.06
 3.03 PlyA +  56162  56167    6                               1.05

 4.00 Prom +  58748  58787   40                              -5.85
 4.01 Init +  59692  59790   99  0  0   62  116    98 0.818  10.33
 4.02 Intr +  83791  84591  801  0  0   75   61   247 0.179  11.42
 4.03 Term +  87450  87758  309  2  0   75   45   206 0.866   9.08
 4.04 PlyA +  88288  88293    6                               1.05

 5.03 PlyA -  88572  88567    6                               1.05
 5.02 Term - 100898  99998  901  1  1  107   48   821 0.718  70.83
 5.01 Init - 107891 107518  374  2  2   59  110   470 0.697  42.78
 5.00 Prom - 117377 117338   40                              -3.75

 6.02 PlyA - 117669 117664    6                               1.05
 6.01 Sngl - 124905 124570  336  0  0   71   44   201 0.832   9.78
 6.00 Prom - 127536 127497   40                              -6.45

 7.03 PlyA - 127702 127697    6                               1.05
 7.02 Term - 128884 128557  328  0  1   67   39   184 0.952   4.60
 7.01 Init - 129204 128969  236  0  2   50   71   139 0.862   6.06
 7.00 Prom - 133475 133436   40                              -6.85

 8.20 PlyA - 134140 134135    6                               1.05
 8.19 Term - 135456 135319  138  0  0   85   49   132 0.993   5.98
 8.18 Intr - 140335 140273   63  1  0   88   87    93 0.991   7.20
 8.17 Intr - 141754 141621  134  2  2   60   79   129 0.945   8.64
 8.16 Intr - 144230 144127  104  1  2   96   44   114 0.850   6.70
 8.15 Intr - 146432 146324  109  0  1  102   82   -36 0.412  -4.38
 8.14 Intr - 148997 148919   79  2  1   59  101    30 0.582  -0.39
 8.13 Intr - 150168 150038  131  1  2   84   86    93 0.675   8.19
 8.12 Intr - 152526 152421  106  0  1   86   52     5 0.079  -4.43
 8.11 Intr - 163335 163233  103  2  1  112  100    37 0.384   6.56
 8.10 Intr - 172445 172353   93  1  0   93   95    78 0.951   7.16
 8.09 Intr - 176746 176589  158  1  2   47   97    78 0.739   2.49
 8.08 Intr - 178827 178758   70  2  1   62  109    70 0.987   4.77
 8.07 Intr - 179190 179042  149  0  2   83   93    47 0.952   2.81
 8.06 Intr - 180107 179878  230  0  2   18   87   233 0.990  12.87
 8.05 Intr - 182521 182425   97  1  1   50   71   133 0.990   6.46
 8.04 Intr - 186497 186372  126  2  0   56  115   156 0.999  15.06
 8.03 Intr - 186780 186643  138  0  0   66   86    89 0.894   6.24
 8.02 Intr - 195330 195246   85  2  1   66   84   116 0.997   7.90
 8.01 Intr - 207005 206900  106  0  1  105   55   111 0.849   7.85

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  11570  11970  401  0  2   32   50   301 0.818  14.99
S.002 Sngl +  22433  22687  255  1  0   84   42   237 0.932  11.57
S.003 Term - 169343 169178  166  1  1   37   43   148 0.827   1.61


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:21665726_21873616|GENSCAN_predicted_peptide_1|308_aa
MNVLRIGQPPQISADSQRLQRSHVVEEDLQTKKKGNDVQKLEVRTYISGPPGPDALRLRG
VKLRTFAVSVTAHEGNVDPKTEQQQDLLQRAKEQSFHNHPGRPRPHPVPIKPPETLPGRD
TSSWTSRGAHWRRNTQAAGRREHIDRHQQAIDRWNNVGFGRGGQRRARLLSDLTPTGKPS
SYSVSLLAPPSAESYFHSIKPCIHSPSPREIQFFGYTKARNPRAISGASGLAVNRKGLGS
QGLLEEAAKKECCQQTRALQPVLHSRCLTSSGQRTKLWACYQPPRVSMQPTVAELSVGHL
KSFRNEAG

>gi568815586r:21665726_21873616|GENSCAN_predicted_CDS_1|927_bp
atgaatgttttgcgaatcgggcagcccccccaaatctcagcagattcacagaggctccag
cgcagccatgtggtggaagaagacttacagacaaaaaaaaagggaaatgacgtacagaaa
ttggaagtgagaacttacatcagtggtcccccaggtcctgacgctctcagactgagagga
gtgaagctgcggaccttcgcagtgagtgttacagctcatgaaggcaatgtggacccaaag
accgagcagcagcaagatttattgcaaagagcgaaagaacaaagcttccacaaccaccct
ggccggccacgtccccatcctgtgcctataaaaccccctgagaccctaccaggcagagac
acaagcagctggacgtcaagaggagcacactggcggaggaacacacaagcagctggacgt
cgagagcacatcgacaggcaccagcaggccatcgacaggtggaacaacgtggggtttgga
cggggtggtcagaggagagcccggctgctgagtgacctgactccaacaggaaaaccatct
tcctactctgtctcccttctggctcccccatctgctgagagctacttccactcaataaaa
ccttgcattcattctccaagcccacgtgagatccaattcttcgggtacaccaaggcaaga
aaccccagggcgatatctggggcatctggccttgctgtgaacagaaagggtttaggcagc
cagggattgttagaagaggcagctaagaaagagtgttgtcagcagaccagagcacttcag
cccgtcctgcatagcaggtgcttaacctcaagtggacagagaacaaagctgtgggcctgc
taccagccccccagggttagcatgcagcccacagttgctgagctgagcgttggccatctg
aaatcattcagaaatgaagccggctga

>gi568815586r:21665726_21873616|GENSCAN_predicted_peptide_2|163_aa
MGRILKVHTTVAVGRSDIFSHQCDEKTRLNETLFTYLVLECVADTQTAGHREEHITGGTR
RWLDIERNAPTSTSRPTSHQPTGRLTRSLAGAVGGERPGHPAAQLQRKTIFLLAPSSAES
YFHSVKPCTHSSSPRVNRFFRHTKARTRDTERPLSLPRGRVSN

>gi568815586r:21665726_21873616|GENSCAN_predicted_CDS_2|492_bp
atggggagaatactcaaggttcacacgacagtggccgtaggaagaagcgatattttttct
catcaatgcgatgagaaaacaaggttgaatgaaacattattcacttacctggtgcttgag
tgtgtggcagacacacaaacggctggacatcgagaggagcacatcactggaggaacacgc
aggtggctggacattgagaggaacgcaccgacaagcaccagcaggccaacaagccaccaa
ccgactggcagactgacacggagtttggctggggcagtcggaggagagcgcccaggccat
ccagcagcccaactccagaggaaaaccatcttccttctggctccctcatctgctgagagc
tacttccactcagtaaaaccttgcactcattcttcaagcccacgtgtgaaccgattcttc
aggcacaccaaggcaagaacccgggatacagaaaggcctctgtccttgccacgaggcaga
gtgtctaattga

>gi568815586r:21665726_21873616|GENSCAN_predicted_peptide_3|93_aa
MWLVSAELLSSFLPKERGEELVTRVEKKSCLHTATLKELVTLGQGTQPIQVSYNSSPLAK
PKKKSVQGGRLGPRRGSREKISSRGAEVEKWRS

>gi568815586r:21665726_21873616|GENSCAN_predicted_CDS_3|282_bp
atgtggctagtgtcagcagagctgttatcatcctttctcccaaaagaacgaggggaagaa
ttggttactagagtggaaaagaagagctgcctgcacacagccaccttgaaagaattagtg
accttaggccaagggacacagccaattcaagtctcctataatagctctccattggccaaa
cctaagaagaagtcagtacaaggaggtagactggggccaagaagggggagcagagagaag
atatccagtagaggagcagaggtggagaagtggaggtcttga

>gi568815586r:21665726_21873616|GENSCAN_predicted_peptide_4|402_aa
MANFIAVLFCDVATATPTFSNHHLDQSAAVNIKNWKKLKFIWNQKRACIAKTILSKKNNA
GGITLPDFKLYYKATVTKRAWYWYQNRYIDQWNRTEASEITPHIYNHLIFDKPDKNKKWG
KDSLFNKWCWENWLSICRKLKLDPFLIPYTKINSRWIKDFRLKTIKTLEENLENTIQDIS
MGKDFMTKTPKAMAAKAKIDKWDLIKLKSFRVAKETTIRVNRQPTEWEKNFAIYPSDKGL
ISRIYRELKQIYKKKPNNPIKKWAKDMNRHFSKEDIYAANRHMKTCSSSLVIREMQIKTT
NLQVLSDGEGGPLFDKPLLVFPRICKEYMNINSSVSLSFGEGIRLAGIDCDNREKKQWYS
APGKVGMTPHPRQVFCGHCKMQKRTSILLKLHMKNEVKEDRE

>gi568815586r:21665726_21873616|GENSCAN_predicted_CDS_4|1209_bp
atggcaaacttcattgctgtcttattttgtgacgttgccacagccaccccaaccttcagc
aaccaccaccttgatcagtcagcagctgtcaacatcaagaattggaaaaaactaaagttc
atatggaaccaaaaaagggcctgcattgccaagacaatcctaagcaaaaagaacaacgct
ggaggcatcacactacctgacttcaagctatactacaaggctacagtaaccaaaagagca
tggtactggtaccaaaacagatatatagaccaatggaacagaacagaggcttcagaaata
acaccacacatctacaaccatctgatctttgacaaacctgacaaaaacaagaaatgggga
aaggattccctatttaataaatggtgctgggaaaactggctatccatatgtagaaagctg
aaactggatcccttccttataccttatacaaaaattaattcaagatggattaaagacttt
agacttaaaaccataaaaaccctagaggaaaacctagagaataccattcaggacataagc
atgggcaaggacttcatgactaaaacaccaaaagcaatggcagcaaaagccaaaattgac
aaatgggatctaattaaactaaagagcttccgtgtggcaaaagaaactaccatcagagtg
aacaggcaacctacggaatgggagaaaaattttgcaatctatccctctgacaaagggcta
atatctagaatctacagagaacttaaacaaatttacaagaaaaaaccaaacaatcccatc
aaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaac
agacacatgaaaacatgctcatcatcactggtcatcagagaaatgcaaatcaaaaccaca
aacttacaggtcctctcagatggagagggtgggccactttttgacaagcctttacttgtg
ttccctagaatctgcaaggagtacatgaatataaactctagcgtcagcttgtcatttgga
gaaggtataaggcttgctggaattgattgtgacaacagagagaagaaacagtggtatagt
gcccctgggaaagtgggaatgacccctcaccccagacaggttttttgtggccattgcaag
atgcagaagagaacttcaattcttttgaagctccacatgaagaacgaagtgaaggaagat
agagaataa

>gi568815586r:21665726_21873616|GENSCAN_predicted_peptide_5|424_aa
MLARKSIIPEEYVLARIAAENLRKPRIRDRLPKARFIAKSGACNLAHKNIREQGRFLQDI
FTTLVDLKWRHTLVIFTMSFLCSWLLFAIMWWLVAFAHGDIYAYMEKSGMEKSGLESTVC
VTNVRSFTSAFLFSIEVQVTIGFGGRMMTEECPLAITVLILQNIVGLIINAVMLGCIFMK
TAQAHRRAETLIFSRHAVIAVRNGKLCFMFRVGDLRKSMIISASVRIQVVKKTTTPEGEV
VPIHQLDIPVDNPIESNNIFLVAPLIICHVIDKRSPLYDISATDLANQDLEVIVILEGVV
ETTGITTQARTSYIAEEIQWGHRFVSIVTEEEGVYSVDYSKFGNTVKVAAPRCSARELDE
KPSILIQTLQKSELSHQNSLRKRNSMRRNNSMRRNNSIRRNNSSLMVPKVQFMTPEGNQN
TSES

>gi568815586r:21665726_21873616|GENSCAN_predicted_CDS_5|1275_bp
atgttggccagaaagagtatcatcccggaggagtatgtgctggcgcgcatcgccgcagag
aacctgcgcaagccgcgcatccgagaccgcctccccaaagcccgcttcatcgccaagagc
ggggcctgcaacctggcgcataagaacatccgtgagcaaggacgctttctacaggacatc
ttcaccaccttggtggacctgaaatggcgccacacgctggtcatctttaccatgtccttc
ctctgcagctggctgctcttcgctatcatgtggtggctggtggcctttgcccatggggac
atctatgcttacatggagaaaagtggaatggagaaaagtggtttggagtccactgtgtgt
gtgactaatgtcaggtctttcacttctgcttttctcttctccattgaagttcaagttacc
attgggtttggagggaggatgatgacagaggaatgccctttggccatcacggttttgatt
ctccagaatattgtgggtttgatcatcaatgcagtcatgttaggctgcattttcatgaaa
acagctcaggctcacagaagggcagaaactttgattttcagccgccatgctgtgattgcc
gtccgaaatggcaagctgtgcttcatgttccgagtgggtgacctgaggaaaagcatgatc
attagtgcctctgtgcgcatccaggtggtcaagaaaacaactacacctgaaggggaggtg
gttcctattcaccaactggacattcctgttgataacccaatcgagagcaataacattttt
ctggtggcccctttgatcatctgccacgtgattgacaagcgcagtcccctgtatgacatc
tcagcaactgacctggccaaccaagacttggaggtcatagttattctggaaggagtggtt
gaaactactggcatcaccacacaagcacgaacctcctacattgctgaggagatccaatgg
ggccaccgctttgtgtccattgtgactgaggaagaaggagtgtattctgtggattactcc
aaatttggcaacactgttaaagtagctgctccacggtgcagtgcccgagagctggatgag
aaaccttccatccttattcagaccctccaaaagagtgaactgtctcatcaaaattctctg
aggaagcgcaactccatgagaagaaacaattccatgaggaggaacaattctatccgaagg
aacaattcttccctcatggtaccaaaggtgcaatttatgactccagaaggaaatcaaaac
acatcggaatcatga

>gi568815586r:21665726_21873616|GENSCAN_predicted_peptide_6|111_aa
MGKDFMTKTPKAMAAKAKIDKWDLIKLKSFCTAKETIIRVNRQPTEWEKNFAIYPSDKGL
ISRIYKELKQMYKKKTNNPIKKWAKDMNRHFSKEDIYVANKHEKKVIITSD

>gi568815586r:21665726_21873616|GENSCAN_predicted_CDS_6|336_bp
atgggcaaagacttcatgactaaaacaccaaaagcaatggcagcaaaagccaaaatagac
aaatgggatctaattaaacttaagagcttctgcacagcaaaagaaactatcatcagagta
aacaggcaacctacagaatgggagaaaaattttgcaatctatccctctgacaaagggcta
atatccagaatctacaaggaacttaaacaaatgtacaagaaaaaaacaaacaaccctatc
aaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttacgtggccaac
aaacatgaaaaaaaggtcatcatcactagtgattag

>gi568815586r:21665726_21873616|GENSCAN_predicted_peptide_7|187_aa
MKLPEKGTGSILCCPAASTGDTQANRVWSGPPPNFSRLQLRGLTVKRKTNKQKAKASTST
KRMSTKKPHLQVTNIKYQRITIPHQQGNKTGRTENEFDESTEVGFRRWVITNSSELKEHV
PTKCKEAKNLEKRLDEWLTRITSLENINDLMELKNTQENFVKHTQVSIAELIKRKKGYQR
LKMNIMK

>gi568815586r:21665726_21873616|GENSCAN_predicted_CDS_7|564_bp
atgaagcttccagagaaaggaacaggcagcattctttgctgtcctgcagcctccactggt
gatacccaggcaaacagggtctggagtggacctccaccaaacttcagcagactgcagctg
aggggcctgactgttaaaaggaaaactaacaaacagaaagcaaaagcatcaacatcaaca
aaaaggatgtccacaaagaaaccccatctgcaggtcaccaacatcaaataccaaaggatc
acaattcctcaccagcaagggaacaaaactggacggacagagaatgagtttgacgaatcg
acagaagtaggcttcagaaggtgggtaataacaaactcctccgagctaaaggagcatgtt
ccaacaaaatgcaaggaagctaagaaccttgaaaaaaggttagacgaatggctaactaga
ataaccagtttagagaacataaatgacttaatggagctgaaaaacacacaagagaacttc
gtgaaacatacacaagtatcaatagctgaactgatcaagcggaagaaaggatatcagaga
ttgaagatgaacataatgaaataa

>gi568815586r:21665726_21873616|GENSCAN_predicted_peptide_8|739_aa
XQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSKYKAVTDACSLQPDIDLLPFGDQTE
IGERDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLTHADWIIAMKDGSVL
REGTLKDIQTKDVELYEHWKTLMNRQDQELEKDMEADQTTLERKTLRRAMYSREAKAQME
DEDEEEEEEEDEDDNMSTVMRLRTKMPWKTCWRYLTSGGFFLLILMIFSKLLKHSVIVAI
DYWLATWTSEYSINNTGKADQTYYVAGFSILCGAGIFLCLVTSLTVEWMGLTAAKNLHHN
LLNKIILGPIRFFDTTPLGLILNRFSADTNIIDQHIPPTLESLTRSTLLCLSAIGMISYA
TPVFLVALLPLGVAFYFIQKYFRVASKDLQELDDSTQLPLLCHFSETAEGLTTIRAFRHE
TRFKQRMLELTDTNNIAYLFLSAANRWLEVRTDYLGACIVLTASIASISGSSNSGLVGLG
LLYALTVDPSQVPEHWPQEGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGS
GKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPE
CKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSIL
IMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVHTILTADLVIVMKRGNILEYDTP
ESLLAQENGVFASFVRADM

>gi568815586r:21665726_21873616|GENSCAN_predicted_CDS_8|2220_bp
ngtcagttaaccatgattgtgggccaagtaggatgtgggaagtcctctcttctccttgcc
atcctcggtgagatgcagacattggaaggaaaagttcactggagcaagtacaaagctgtc
acagatgcctgttctcttcagccagatattgacttattaccatttggagatcaaactgaa
attggagagagggatgatccattctcagccctggacattcacttgagtgatcatttaatg
caggaggggattttgaaattcctgcaagatgacaaaaggacactcgttcttgtgactcac
aaattacagtatctgacgcatgctgactggatcatagccatgaaagatggaagtgtccta
agagaaggaactttgaaggacattcaaaccaaagatgttgagctttatgaacactggaaa
acacttatgaatcggcaagatcaagaattagaaaaggatatggaagctgaccaaactact
ttagagaggaaaactctccgacgggccatgtattcaagagaagccaaagcccagatggag
gacgaagacgaagaggaagaagaggaggaagatgaggatgataacatgtccactgtaatg
aggctcaggactaaaatgccatggaaaacctgctggcgctacctgacatctggaggattc
ttcctgctcatcctgatgattttctctaagcttttgaagcattcggtcattgtagctata
gactattggctggccacatggacatcggagtacagtataaacaatactggaaaagctgat
cagacctactatgtggctggctttagcatactctgtggagcaggcattttcctttgcctt
gttacatccctcactgtagaatggatgggtctcacagctgccaaaaatcttcaccacaac
cttctcaataagataatccttggaccaataaggttttttgataccacacccctgggactg
attctcaatcgcttttcagctgatactaatatcattgatcagcacatccctccaaccttg
gaatctctaactcgctcaacactgctctgcctgtctgccattgggatgatttcttatgct
actcctgtgttcctggttgctctcctgccccttggtgttgccttttattttatccagaaa
tactttcgggttgcctctaaggacctccaggaacttgacgatagtacccagctccctctg
ctctgtcacttctcagaaacagcagaaggactcaccaccattcgggcctttaggcatgaa
accagatttaaacaacgtatgctggaactgacggatacaaacaacattgcctacttattt
ctctcagctgccaacagatggctggaggtcaggacggattatctgggagcttgcattgtc
ctcactgcatctatagcatccattagtgggtcttcgaattctggattggtaggcttgggt
cttctgtatgcacttacggtagatccttctcaagttccagaacattggccacaagaaggg
gagatcaagatacatgatctgtgtgtcagatatgaaaataatctgaaacctgttcttaag
cacgtcaaggcttacatcaaacctggacaaaaggtgggcatatgtggtcgcactggcagt
gggaaatcatcgttatctctggctttcttcagaatggttgatatatttgatggaaaaatt
gtcattgatgggatagacatttccaaattaccactgcacacactacgttctagactttca
atcattctgcaggatccaatactattcagtggttccattagatttaatttagatccagag
tgcaaatgcacagatgacagactctgggaagccttagaaattgctcagctgaagaatatg
gtcaaatctctacctggaggtctagatgcggttgtcactgaaggtggggagaattttagc
gttggacagagacagctattttgccttgccagggcctttgtccgcaaaagcagcattctt
attatggatgaggcaacagcttccattgacatggccacagagaatattttgcaaaaagta
gtaatgacagcctttgcagaccggaccgtggtgacaatagctcatcgagtacacactatt
ctgacggcagacctggttattgtgatgaagcgaggaaatattttagaatatgacactcca
gaaagcctcttggctcaggaaaatggagtatttgcttcttttgttcgcgcagacatgtga